ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl33a08 |
|---|---|
| Clone Library Name | barley_pub |
>ATL1N_ARATH (Q84W40) RING-H2 finger protein ATL1N precursor| Length = 404 Score = 31.2 bits (69), Expect = 1.2 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%) Frame = -1 Query: 164 CEICLRYVDSSKFFRMFMTCCHL-HSACIN-FVRMFITC 54 C +CL + + R+ CCH+ H CI+ ++R TC Sbjct: 144 CSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWLRSHTTC 182
>IPP_MOUSE (P28575) Actin-binding protein IPP (MIPP protein) (Murine| IAP-promoted placenta-expressed protein) Length = 584 Score = 30.8 bits (68), Expect = 1.6 Identities = 16/54 (29%), Positives = 28/54 (51%) Frame = -1 Query: 278 DGIRQGELH*AFSVLVEEVCGICLRYVDSSKSLLVKEGCEICLRYVDSSKFFRM 117 +G+ L A L++E C +C ++ L+KE CE+C + +KF R+ Sbjct: 241 EGVSDFNLRVALQTLLKEYCEVCKSPKENKFCRLLKEYCEVC-KSPKENKFCRV 293
>ATL1C_ARATH (Q9SK92) RING-H2 finger protein ATL1C precursor (RING-H2 finger| protein ATL15) Length = 381 Score = 30.0 bits (66), Expect = 2.7 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%) Frame = -1 Query: 164 CEICLRYVDSSKFFRMFMTCCHL-HSACIN-FVRMFITC 54 C +CL + + R+ CCH+ H CI+ ++R TC Sbjct: 118 CPVCLNEFEDDETLRLIPQCCHVFHPGCIDAWLRSQTTC 156
>CERU_RAT (P13635) Ceruloplasmin precursor (EC 1.16.3.1) (Ferroxidase)| Length = 1059 Score = 30.0 bits (66), Expect = 2.7 Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 6/88 (6%) Frame = +1 Query: 61 MNILTKLIHAECR*QQVINILKNFELSTY------LKQISQPSFTNKDFELSTYLKQIPQ 222 + +L LIHA+ +V + KN Y +K S E+ TY+ QIP+ Sbjct: 799 LGMLGPLIHADVG-AKVKVVFKNMATRPYSIHAHGVKTKSSTVAPTLPGEVRTYIWQIPE 857 Query: 223 TSSTNTEKAQCSSPWRIPSPV*NISSFF 306 S TE + C PW S V + + Sbjct: 858 RSGAGTEDSPC-IPWAYYSTVDRVKDLY 884
>DBP6_YEAST (P53734) ATP-dependent RNA helicase DBP6 (EC 3.6.1.-) (DEAD box| protein 6) Length = 629 Score = 29.3 bits (64), Expect = 4.5 Identities = 15/33 (45%), Positives = 16/33 (48%) Frame = +1 Query: 148 LKQISQPSFTNKDFELSTYLKQIPQTSSTNTEK 246 LKQI QP F L+T Q T NTEK Sbjct: 131 LKQIPQPEFVKNPMNLNTNSLQFKSTGWLNTEK 163
>ALG6_DROME (Q9VKX7) Probable dolichyl pyrophosphate Man9GlcNAc2| alpha-1,3-glucosyltransferase (EC 2.4.1.-) (Dolichyl-P-Glc:Man9GlcNAc2-PP-dolichyl glucosyltransferase) Length = 475 Score = 28.9 bits (63), Expect = 5.9 Identities = 12/29 (41%), Positives = 15/29 (51%) Frame = -3 Query: 315 YSEEKGADISYWGWDSPR*TALSFFCVGR 229 Y+ D+ YWG D P TA + VGR Sbjct: 55 YTNSSNNDLQYWGLDYPPLTAYHSYLVGR 83
>RPB1_ASHGO (Q75A34) DNA-directed RNA polymerase II largest subunit (EC| 2.7.7.6) (RNA polymerase II subunit 1) Length = 1745 Score = 28.9 bits (63), Expect = 5.9 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%) Frame = +1 Query: 121 LKNFELSTYLKQISQPSFTNKDFELSTYLKQIPQTSSTNTEKAQ-CSSPWRIPSP 282 +K ST+ +S S N DF+ +PQ+ T E +Q C+ P +I SP Sbjct: 460 VKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSP 514
>VPS1_YEAST (P21576) Vacuolar sorting protein 1| Length = 704 Score = 28.9 bits (63), Expect = 5.9 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = +2 Query: 269 ESHPQYEISAPFSSL*WSRNQLASFLLDHVRDWLP 373 E+HP Y A + + +L S LL H+R LP Sbjct: 302 ENHPSYSSKAHYCGTPYLAKKLNSILLHHIRQTLP 336
>ADG3_SCHPO (O74851) Protein adg3 precursor| Length = 1131 Score = 28.9 bits (63), Expect = 5.9 Identities = 22/84 (26%), Positives = 40/84 (47%) Frame = +1 Query: 163 QPSFTNKDFELSTYLKQIPQTSSTNTEKAQCSSPWRIPSPV*NISSFFLTVME*KPIGEF 342 +PS T+ S+Y+ +++ +TE SS + + +I++ LTV KP Sbjct: 929 KPSLTSSVSTASSYIASSASSNTLSTEPKTFSSSSTLSESISSINTNSLTV---KPESSL 985 Query: 343 SP*SCSRLAASPSAMASYSQGAXN 414 S + S L +S S + S ++ N Sbjct: 986 SSSTTSGLTSSSSTIPSSTRSESN 1009
>RPB1_YEAST (P04050) DNA-directed RNA polymerase II largest subunit (EC| 2.7.7.6) (RNA polymerase II subunit 1) (B220) Length = 1733 Score = 28.9 bits (63), Expect = 5.9 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%) Frame = +1 Query: 121 LKNFELSTYLKQISQPSFTNKDFELSTYLKQIPQTSSTNTEKAQ-CSSPWRIPSP 282 +K ST+ +S S N DF+ +PQ+ T E +Q C+ P +I SP Sbjct: 460 VKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSP 514
>UL25_SHV21 (Q01004) Virion gene 19 protein| Length = 543 Score = 28.9 bits (63), Expect = 5.9 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 2/76 (2%) Frame = +2 Query: 167 LPSPTKILSYLHISSKFHRLPRPTQKKLNA--VHLGESHPQYEISAPFSSL*WSRNQLAS 340 LPSP K LS S +PT K N + + P + + + F + +L S Sbjct: 105 LPSPPKPLSPTTQS-------QPTNFKTNVYTITVAPGDPGFTVESNF------KIELVS 151 Query: 341 FLLDHVRDWLPAHQPW 388 L + + WLP++ PW Sbjct: 152 SLYTNQQQWLPSYGPW 167
>REC10_SCHPO (Q09823) Meiotic recombination protein rec10| Length = 791 Score = 28.5 bits (62), Expect = 7.7 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%) Frame = +1 Query: 115 NILKNFELSTYLKQISQPSFT--NKDFELSTYLKQIPQTSSTNTEKAQCSSP 264 ++ K + KQ S+P T ++ +LST++KQ + T+ CSSP Sbjct: 601 SVWKELLKEKHWKQESKPQLTGNSRQIDLSTFVKQANTPNITSLLDGTCSSP 652 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,146,899 Number of Sequences: 219361 Number of extensions: 1143876 Number of successful extensions: 3303 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 3218 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3302 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2618960580 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
