>NCCH_ALCXX (Q44583) RNA polymerase sigma factor nccH|
          Length = 186

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +3

Query: 312 IIQRSTIGSWDTYQALNRAGEMKLPWMFIIKLSRLKDLMELRGIGH 449
           I+Q + I +W      + + ++  PW+F I L++++DL   R + H
Sbjct: 50  IVQDTFIAAWHALDDFD-SDKLFRPWLFRIGLNKMRDLRRFRQVRH 94

>SWD3_YEAST (P38123) COMPASS component SWD3 (Complex proteins associated with|
           SET1 protein SWD3) (Set1C component SWD3)
          Length = 315

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 474 FISSCWSPDGQCLVAPSGPSALRV 403
           F   CWSPDGQC+   S   ++ +
Sbjct: 58  FSELCWSPDGQCIATASDDFSVEI 81

>MURI_PSEPK (Q88PW2) Glutamate racemase (EC 5.1.1.3)|
          Length = 265

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +2

Query: 407 LKAEGPDGATRHWPSGDQQELMK 475
           L AEGP GA R W S D + L K
Sbjct: 226 LLAEGPAGAARFWTSADPEALRK 248

>YKE7_YEAST (P36090) Hypothetical 58.9 kDa protein in ELM1-PRI2 intergenic|
           region
          Length = 516

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
 Frame = +2

Query: 140 TSKAQ*FDLGYSYIDSKTYKLIIQMNMDVKLNKDSVSTGV--DVITSMQKALNGVFWYIY 313
           T+K   +D G +Y    ++ +I   N   +      S GV  DV  +   +    +  IY
Sbjct: 92  TAKTTTYDYGIAYFKQNSFDIIENDNRIDRSKVQMFSLGVIIDVQNASSDSKKHFYKEIY 151

Query: 314 YSTVHNRIMGYLSGSK*SWRNETPLD 391
           ++   NR   YL      W  +  LD
Sbjct: 152 HAYAANRYSSYLESLLGQWIRQRDLD 177

>ISP4_SCHPO (P40900) Sexual differentiation process protein isp4|
          Length = 785

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 22/92 (23%), Positives = 45/92 (48%)
 Frame = +2

Query: 110 YKS*RILTISTSKAQ*FDLGYSYIDSKTYKLIIQMNMDVKLNKDSVSTGVDVITSMQKAL 289
           Y++   + +ST+ A  F L ++ I S  + +I+    ++  ++       D+   + KA 
Sbjct: 400 YQNYSPIFMSTTYALAFGLSFASITSVIFHVILYHGKEI-YDRLRDPPAPDIHEKLMKAY 458

Query: 290 NGVFWYIYYSTVHNRIMGYLSGSK*SWRNETP 385
           + V +Y +Y +V     G + G+   W+ ETP
Sbjct: 459 DEVPFY-WYLSVFLAFFGMMMGTIYGWKTETP 489


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,471,369
Number of Sequences: 219361
Number of extensions: 1426841
Number of successful extensions: 2971
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2971
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3581144924
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)