ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl33a06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HAP1_HAEIN (P44596) Adhesion and penetration protein precursor (... 34 0.22
2STE3_YEAST (P06783) Pheromone a factor receptor 30 2.4
3BORG4_MOUSE (Q9JM96) Cdc42 effector protein 4 (Binder of Rho GTP... 28 9.1

>HAP1_HAEIN (P44596) Adhesion and penetration protein precursor (EC 3.4.21.-)|
          Length = 1409

 Score = 33.9 bits (76), Expect = 0.22
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
 Frame = +3

Query: 102 GVQPSCLSTDC-RGEKAAMELCLTIVLRSTR*TNYFP*KWAQ-KINNRNRATVKVINALA 275
           GV P+  +T C R +   +  C T+ L  T+  N  P       IN  N ATV +     
Sbjct: 705 GVVPNXQNTICTRSDWTGLTTCKTVNLTDTKVINSIPITQINGSINLTNNATVNIHGLAK 764

Query: 276 TRTHVTAPDHSSSSMKQNSEE 338
              +VT  DHS  ++  N+ +
Sbjct: 765 LNGNVTLIDHSQFTLSNNATQ 785



to top

>STE3_YEAST (P06783) Pheromone a factor receptor|
          Length = 470

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 41  RIFNYCLSRFSSALNLLTAAWRTTVLF 121
           ++F Y ++R++   NLL+  W TTVL+
Sbjct: 135 QVFRYGIARYNGCQNLLSPTWITTVLY 161



to top

>BORG4_MOUSE (Q9JM96) Cdc42 effector protein 4 (Binder of Rho GTPases 4)|
          Length = 349

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -3

Query: 355 APSRRGSSEFCFIDEEE 305
           AP R+   EFCF+DEEE
Sbjct: 327 APPRQPDKEFCFMDEEE 343


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,896,861
Number of Sequences: 219361
Number of extensions: 1156628
Number of successful extensions: 2488
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2486
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top