Clone Name | rbastl33a06 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_467920.1| Oryza sativa (japonica cultivar-group), mRNA Length = 675 Score = 63.9 bits (32), Expect = 4e-07 Identities = 62/72 (86%) Strand = Plus / Minus Query: 398 tcacaggcacttcttgatgtctgaaaataacgacttctctttgtttgctgcctcgacgtc 457 ||||||||||||||||| ||||||||| || | || || ||||||||||| |||||||| Sbjct: 372 tcacaggcacttcttgacgtctgaaaacaagggattttccttgtttgctgcttcgacgtc 313 Query: 458 gtcaggcgatgc 469 ||||| ||||| Sbjct: 312 ctcaggtgatgc 301
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 63.9 bits (32), Expect = 4e-07 Identities = 62/72 (86%) Strand = Plus / Minus Query: 398 tcacaggcacttcttgatgtctgaaaataacgacttctctttgtttgctgcctcgacgtc 457 ||||||||||||||||| ||||||||| || | || || ||||||||||| |||||||| Sbjct: 32087614 tcacaggcacttcttgacgtctgaaaacaagggattttccttgtttgctgcttcgacgtc 32087555 Query: 458 gtcaggcgatgc 469 ||||| ||||| Sbjct: 32087554 ctcaggtgatgc 32087543
>dbj|AP005002.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0486G03 Length = 146713 Score = 63.9 bits (32), Expect = 4e-07 Identities = 62/72 (86%) Strand = Plus / Minus Query: 398 tcacaggcacttcttgatgtctgaaaataacgacttctctttgtttgctgcctcgacgtc 457 ||||||||||||||||| ||||||||| || | || || ||||||||||| |||||||| Sbjct: 24270 tcacaggcacttcttgacgtctgaaaacaagggattttccttgtttgctgcttcgacgtc 24211 Query: 458 gtcaggcgatgc 469 ||||| ||||| Sbjct: 24210 ctcaggtgatgc 24199
>dbj|AK060417.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-F01, full insert sequence Length = 675 Score = 63.9 bits (32), Expect = 4e-07 Identities = 62/72 (86%) Strand = Plus / Minus Query: 398 tcacaggcacttcttgatgtctgaaaataacgacttctctttgtttgctgcctcgacgtc 457 ||||||||||||||||| ||||||||| || | || || ||||||||||| |||||||| Sbjct: 372 tcacaggcacttcttgacgtctgaaaacaagggattttccttgtttgctgcttcgacgtc 313 Query: 458 gtcaggcgatgc 469 ||||| ||||| Sbjct: 312 ctcaggtgatgc 301
>emb|AL589862.28| Human DNA sequence from clone GS1-165F21 on chromosome 10 Contains the 5' end of the PAX2 gene for paired box gene 2 and fifteen CpG islands, complete sequence Length = 187101 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 290 tacagcgccagaccattcttctt 312 ||||||||||||||||||||||| Sbjct: 139014 tacagcgccagaccattcttctt 138992
>gb|AC114763.6| Homo sapiens BAC clone RP11-369K2 from 2, complete sequence Length = 87248 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 92 acagcagcttggcgtacaaccgtctt 117 ||||||||||||| |||||||||||| Sbjct: 13338 acagcagcttggcttacaaccgtctt 13313
>gb|AC016737.8| Homo sapiens BAC clone RP11-394I13 from 2, complete sequence Length = 196085 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 33 caagttacagaatattcaacta 54 |||||||||||||||||||||| Sbjct: 126156 caagttacagaatattcaacta 126177
>gb|AC115834.8| Mus musculus chromosome 3, clone RP24-159L1, complete sequence Length = 175998 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 430 acttctctttgtttgctgcct 450 ||||||||||||||||||||| Sbjct: 101268 acttctctttgtttgctgcct 101248
>emb|Z81036.1|CEC16C2 Caenorhabditis elegans Cosmid C16C2, complete sequence Length = 21917 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 407 cttcttgatgtctgaaaataa 427 ||||||||||||||||||||| Sbjct: 15091 cttcttgatgtctgaaaataa 15111
>ref|XM_763279.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_15_12905_13390) partial mRNA Length = 486 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 59 ttgagcaggttctcatcagct 79 ||||||||||||||||||||| Sbjct: 443 ttgagcaggttctcatcagct 423
>ref|XM_763280.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_15_13494_12943) partial mRNA Length = 552 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 59 ttgagcaggttctcatcagct 79 ||||||||||||||||||||| Sbjct: 148 ttgagcaggttctcatcagct 168
>emb|Z99119.2|BSUB0016 Bacillus subtilis complete genome (section 16 of 21): from 3013458 to 3213379 Length = 199922 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 415 tgtctgaaaataacgacttct 435 ||||||||||||||||||||| Sbjct: 2059 tgtctgaaaataacgacttct 2039
>emb|X92428.1|ZMHOX1BGN Z.mays mRNA for Hox1b protein Length = 2790 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 297 ccagaccattcttcttcatca 317 ||||||||||||||||||||| Sbjct: 1632 ccagaccattcttcttcatca 1612
>emb|AL731817.11| Mouse DNA sequence from clone RP23-3J16 on chromosome 11 Contains a novel gene and the 3' end of a novel gene, complete sequence Length = 103582 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 320 gaagcaaaactctgaagaacc 340 ||||||||||||||||||||| Sbjct: 23966 gaagcaaaactctgaagaacc 23986
>gb|AC005375.4|AC005375 Homo sapiens chromosome 17, clone hRPK.388_F_14, complete sequence Length = 149030 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 197 taattatttcccctaaaaatg 217 ||||||||||||||||||||| Sbjct: 90915 taattatttcccctaaaaatg 90895
>gb|L17320.1|BACACKA Bacillus subtilis acetate kinase (ackA) gene, complete cds Length = 1951 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 415 tgtctgaaaataacgacttct 435 ||||||||||||||||||||| Sbjct: 519 tgtctgaaaataacgacttct 539
>gb|AF008220.1|AF008220 Bacillus subtilis rrnB-dnaB genomic region Length = 220060 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 415 tgtctgaaaataacgacttct 435 ||||||||||||||||||||| Sbjct: 162648 tgtctgaaaataacgacttct 162668
>ref|NM_152884.2| Danio rerio caspase b (caspb), mRNA Length = 1812 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 aagcaaaactctgaagaacc 340 |||||||||||||||||||| Sbjct: 329 aagcaaaactctgaagaacc 348
>gb|CP000233.1| Lactobacillus salivarius subsp. salivarius UCC118, complete genome Length = 1827111 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 88 cctaacagcagcttggcgtacaac 111 ||||||||| |||||||||||||| Sbjct: 609609 cctaacagctgcttggcgtacaac 609632
>gb|AC091726.2| Gallus gallus clone WAG-126P17, complete sequence Length = 129285 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 tgagcactgattgcagaggg 140 |||||||||||||||||||| Sbjct: 58108 tgagcactgattgcagaggg 58127
>emb|AL078612.8|HSDJ65P5 Human DNA sequence from clone RP1-65P5 on chromosome 11p13 Contains the RCN1 gene for EF-hand calcium binding domain protein reticulocalbin 1, a seudogene similar to part of EIF4A (Eukaryotic Initiation Factor 4A), ESTs, STSs, GSSs and a putative CpG island, complete sequence Length = 94497 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 405 cacttcttgatgtctgaaaa 424 |||||||||||||||||||| Sbjct: 46257 cacttcttgatgtctgaaaa 46276
>emb|AL021069.1|HS970D1 Human DNA sequence from clone RP5-970D1 on chromosome 1q24 Contains the 3' end of a variant of the gene for expressed in hematopoietic cells (heart, liver) (HLL), complete sequence Length = 100496 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 aactaattatttcccctaaa 213 |||||||||||||||||||| Sbjct: 64950 aactaattatttcccctaaa 64969
>emb|BX469930.13| Zebrafish DNA sequence from clone CH211-114L13 in linkage group 1, complete sequence Length = 183380 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 aagcaaaactctgaagaacc 340 |||||||||||||||||||| Sbjct: 49785 aagcaaaactctgaagaacc 49804
>gb|DQ022755.1| Danio rerio caspase b (caspb) mRNA, complete cds Length = 1215 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 aagcaaaactctgaagaacc 340 |||||||||||||||||||| Sbjct: 292 aagcaaaactctgaagaacc 311
>gb|BC095000.1| Danio rerio caspase b, mRNA (cDNA clone MGC:109807 IMAGE:7255283), complete cds Length = 1812 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 aagcaaaactctgaagaacc 340 |||||||||||||||||||| Sbjct: 329 aagcaaaactctgaagaacc 348
>gb|AF327410.1|AF327410 Danio rerio Caspy2 (caspy2) mRNA, complete cds Length = 1215 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 aagcaaaactctgaagaacc 340 |||||||||||||||||||| Sbjct: 292 aagcaaaactctgaagaacc 311
>gb|AC087231.1|AC087231 Caenorhabditis briggsae cosmid CB034P13, complete sequence Length = 71462 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 3 ttgcgaaaacatttatatctttcc 26 |||||||||||||||| ||||||| Sbjct: 68882 ttgcgaaaacatttatttctttcc 68859
>emb|Z34802.1|CEM88 Caenorhabditis elegans Cosmid M88, complete sequence Length = 32723 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 408 ttcttgatgtctgaaaataa 427 |||||||||||||||||||| Sbjct: 8409 ttcttgatgtctgaaaataa 8428 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,755,273 Number of Sequences: 3902068 Number of extensions: 4755273 Number of successful extensions: 96140 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 96057 Number of HSP's gapped (non-prelim): 83 length of query: 471 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 449 effective length of database: 17,147,199,772 effective search space: 7699092697628 effective search space used: 7699092697628 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)