ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl33a05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EXOC4_ARATH (Q93YU5) Probable exocyst complex component 4 (Exocy... 101 9e-22
2Y13L_BPT4 (P39505) Hypothetical 9.4 kDa protein in nrdB-nrdA int... 33 0.37
3ALG14_DEBHA (Q6BMD0) UDP-N-acetylglucosamine transferase subunit... 30 3.2
4SYIC_SCHPO (O13651) Isoleucyl-tRNA synthetase, cytoplasmic (EC 6... 29 5.4
5WNT4_DROME (P40589) Protein Wnt-4 precursor (dWnt-4) 28 9.2
6DPO3_CLOTE (Q895K2) DNA polymerase III polC-type (EC 2.7.7.7) (P... 28 9.2

>EXOC4_ARATH (Q93YU5) Probable exocyst complex component 4 (Exocyst complex|
            component Sec8)
          Length = 1053

 Score =  101 bits (252), Expect = 9e-22
 Identities = 47/77 (61%), Positives = 60/77 (77%)
 Frame = -1

Query: 475  ALXAIPSIDSEAVQQRLDRVRTFYELLNLPFETLLGFIAEQEYLFSAKEYLSILKVNVPG 296
            A+ AIP ID E VQQ LDRVRT++ELLN+PFE LL FIAE + +F+  EY ++LKVNVPG
Sbjct: 977  AMAAIPYIDGETVQQNLDRVRTYFELLNMPFEALLAFIAEHDQMFTPTEYSNLLKVNVPG 1036

Query: 295  REIPMDAERRISQILGH 245
            R+ P DA+ R+ +IL H
Sbjct: 1037 RDTPSDAQSRLLEILSH 1053



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>Y13L_BPT4 (P39505) Hypothetical 9.4 kDa protein in nrdB-nrdA intergenic|
           region
          Length = 83

 Score = 33.1 bits (74), Expect = 0.37
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = +2

Query: 8   LHPKYHTFTRIKNKRSIQNTTNLLSMRQQIVHYLPICRHQKKKPNRNNKINYSYKESR 181
           L+P Y T +  ++    + T +L+S+R +     P C H  KK N+ N + + Y + +
Sbjct: 21  LNPMYGTISPTRDVPHTKETRDLISLRTKQGAEYPPCPHCGKKVNKGNALRWHYDKCK 78



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>ALG14_DEBHA (Q6BMD0) UDP-N-acetylglucosamine transferase subunit ALG14 (EC|
           2.4.1.-) (Asparagine linked glycosylation protein 14)
          Length = 232

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = -1

Query: 427 LDRVRTFYELLNLP-FETLLGFIAEQEYLFSAKEYLSILKVNVPGREIPM 281
           L R RT  E + L  F T+   I+  ++L+   ++ SIL +N PG  +P+
Sbjct: 119 LHRARTVGESIILSVFSTVRSLISTIKHLYELPQFPSILLLNGPGTSVPL 168



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>SYIC_SCHPO (O13651) Isoleucyl-tRNA synthetase, cytoplasmic (EC 6.1.1.5)|
           (Isoleucine--tRNA ligase) (IleRS)
          Length = 1064

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 11/52 (21%)
 Frame = -1

Query: 454 IDSEAVQQRLDRVRTFYEL-----------LNLPFETLLGFIAEQEYLFSAK 332
           +D E V +R+ R++T  EL           L  P +TL+  +  +EYL  AK
Sbjct: 808 LDDETVLRRVKRMQTIIELARYVREQNNISLKTPLKTLIVILTNEEYLEDAK 859



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>WNT4_DROME (P40589) Protein Wnt-4 precursor (dWnt-4)|
          Length = 539

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +2

Query: 26  TFTRIKNKRSIQNTTNLLSMRQQIVHYLPICRHQKKKPNRNNKINYSYKESRGRYC 193
           T  R K   +I+   N  SMRQ     +   + ++KKP ++      Y E+   YC
Sbjct: 423 TLLRQKYNEAIRKAPNQRSMRQVSSSRMKKPKQRRKKPQQSQYTTLYYLETSPSYC 478



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>DPO3_CLOTE (Q895K2) DNA polymerase III polC-type (EC 2.7.7.7) (PolIII)|
          Length = 1427

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
 Frame = +2

Query: 2   VKLHPKYHTFTRIKNKRSIQNTTNLLSMRQQIVHYLPICRHQKKKPNRNNKINYSYKESR 181
           +K  P YH    +KNK  ++N   L+S             H  KKP     +   Y+E  
Sbjct: 596 IKKSPTYHVIILVKNKIGLKNLYKLISESH--------LNHFYKKPRMPKSLINKYREGL 647

Query: 182 --GRYCE 196
             G  CE
Sbjct: 648 MIGSACE 654


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,736,295
Number of Sequences: 219361
Number of extensions: 967081
Number of successful extensions: 2333
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2331
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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