ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl33a04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PHLC_CLOHA (P59026) Phospholipase C precursor (EC 3.1.4.3) (PLC)... 30 2.7
2BRL2_ARATH (Q9ZPS9) Serine/threonine-protein kinase BRI1-like 2 ... 30 3.5
3SRB3_CAEEL (Q95ZY2) Serpentine receptor class beta-3 (Protein sr... 29 6.0
4GPR89_MOUSE (Q8BS95) Protein GPR89A 28 7.9

>PHLC_CLOHA (P59026) Phospholipase C precursor (EC 3.1.4.3) (PLC)|
           (Phosphatidylcholine cholinephosphohydrolase) (Beta
           toxin)
          Length = 399

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 148 WRRTGAKQLTELLNLGLHLRGEMQPPYLP*NL 243
           W++   +Q T LL  GLH  G+   PY P N+
Sbjct: 136 WKKGNYEQATWLLGQGLHYFGDFHTPYHPSNV 167



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>BRL2_ARATH (Q9ZPS9) Serine/threonine-protein kinase BRI1-like 2 precursor (EC|
           2.7.11.1) (BRASSINOSTEROID INSENSITIVE 1-like protein 2)
           (Protein VASCULAR HIGHWAY 1)
          Length = 1143

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
 Frame = +3

Query: 54  NNRSLGQLNIPFQTCKTVEWSQIDPNSTSSNLAKDGG--------KATN*TTELRVALEG 209
           NN+  G++   F  C  +EW     N  +  + KD G        +  N      +  E 
Sbjct: 456 NNQLTGEIPPEFFNCSNIEWVSFTSNRLTGEVPKDFGILSRLAVLQLGNNNFTGEIPPEL 515

Query: 210 GNATTLPTLKSHRMLNYVTGALTP 281
           G  TTL  L  +   N++TG + P
Sbjct: 516 GKCTTLVWLDLN--TNHLTGEIPP 537



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>SRB3_CAEEL (Q95ZY2) Serpentine receptor class beta-3 (Protein srb-3)|
          Length = 341

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 342 IHFLSLRSIMLHFQNNVHCMLLM-FSCMHM*TQVLC 446
           I+F++ +   LHF  N+ C+L++ F C  + +  LC
Sbjct: 40  IYFITRKIFFLHFHGNLKCLLIVYFICNLLFSMALC 75



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>GPR89_MOUSE (Q8BS95) Protein GPR89A|
          Length = 455

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = +2

Query: 239 ISSNAELCNRSSNAYFHRSCPSWLPFCLMTWGL*DSFSVASQHHASFSEQCPLHAVDVL 415
           I SN +L ++    +   SC  WL F    W L D F + S  H   S +  +  V V+
Sbjct: 98  IVSNIQLLHKQRLLF---SCLLWLTFMYFFWKLGDPFPILSPKHGILSIEQLISRVGVI 153


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,414,533
Number of Sequences: 219361
Number of extensions: 1180542
Number of successful extensions: 3112
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3112
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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