Clone Name | rbastl33a03 |
---|---|
Clone Library Name | barley_pub |
>S23A1_RAT (Q9WTW7) Solute carrier family 23 member 1 (Sodium-dependent| vitamin C transporter 1) (Na(+)/L-ascorbic acid transporter 1) Length = 604 Score = 29.6 bits (65), Expect = 3.4 Identities = 9/11 (81%), Positives = 9/11 (81%) Frame = -2 Query: 270 PWIPIPYPCSW 238 PWI IPYPC W Sbjct: 308 PWIRIPYPCQW 318
>S23A1_MOUSE (Q9Z2J0) Solute carrier family 23 member 1 (Sodium-dependent| vitamin C transporter 1) (Na(+)/L-ascorbic acid transporter 1) (Yolk sac permease-like molecule 3) Length = 605 Score = 29.6 bits (65), Expect = 3.4 Identities = 9/11 (81%), Positives = 9/11 (81%) Frame = -2 Query: 270 PWIPIPYPCSW 238 PWI IPYPC W Sbjct: 308 PWIRIPYPCQW 318
>S23A1_HUMAN (Q9UHI7) Solute carrier family 23 member 1 (Sodium-dependent| vitamin C transporter 1) (hSVCT1) (Na(+)/L-ascorbic acid transporter 1) (Yolk sac permease-like molecule 3) Length = 598 Score = 29.6 bits (65), Expect = 3.4 Identities = 9/11 (81%), Positives = 9/11 (81%) Frame = -2 Query: 270 PWIPIPYPCSW 238 PWI IPYPC W Sbjct: 301 PWIRIPYPCQW 311
>TPP1_PONPY (Q5RFL1) Tripeptidyl-peptidase 1 precursor (EC 3.4.14.9)| (Tripeptidyl-peptidase I) (TPP-I) (Tripeptidyl aminopeptidase) Length = 564 Score = 29.6 bits (65), Expect = 3.4 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 1/60 (1%) Frame = +2 Query: 2 NQKALPWAAKAMVCTILILADAFTLYTNTSVLQGKPPSGSNKSQVYRGNNALVHDF-HSC 178 N+ +PW + T + +L +L G+PP G ++Y+ + A + D H C Sbjct: 464 NRVPIPWVSGTSASTPVFGGGILSLINEHRILSGRPPLGFLNPRLYQQHGAGLFDVTHGC 523
>C1QR1_HUMAN (Q9NPY3) Complement component C1q receptor precursor (Complement| component 1, q subcomponent, receptor 1) (C1qR) (C1qRp) (C1qR(p)) (C1q/MBL/SPA receptor) (CD93 antigen) (CDw93) Length = 652 Score = 28.5 bits (62), Expect = 7.6 Identities = 17/40 (42%), Positives = 22/40 (55%) Frame = -2 Query: 408 GGDASFLCILPSTWRLLAAVFFCYN*RHRCSSCSGKGRVT 289 GGD SFLC +RLL + C + R+ CSS +G T Sbjct: 278 GGDGSFLCGCRPGFRLLDDLVTCAS-RNPCSSSPCRGGAT 316
>SYY_SYNAS (Q2LR98) Tyrosyl-tRNA synthetase (EC 6.1.1.1) (Tyrosine--tRNA| ligase) (TyrRS) Length = 428 Score = 28.1 bits (61), Expect = 9.9 Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 4/49 (8%) Frame = -2 Query: 420 STIAGG----DASFLCILPSTWRLLAAVFFCYN*RHRCSSCSGKGRVTR 286 STI G DAS + + +W LA Y H C CS K R Sbjct: 333 STIPRGQLSQDASAIPFIKKSWNELAKGIPAYEIMHECGLCSSKSEARR 381
>DNAJ_BACHD (Q9KD71) Chaperone protein dnaJ| Length = 370 Score = 28.1 bits (61), Expect = 9.9 Identities = 8/16 (50%), Positives = 14/16 (87%) Frame = -2 Query: 330 RHRCSSCSGKGRVTRR 283 +H+C++C GKG+V +R Sbjct: 195 KHKCATCGGKGKVRKR 210
>RAMP3_CAVPO (Q8R4C4) Receptor activity-modifying protein 3 precursor| Length = 146 Score = 28.1 bits (61), Expect = 9.9 Identities = 15/46 (32%), Positives = 24/46 (52%) Frame = +3 Query: 279 RFVW*LCLCPSTKNICGVNYNRRRLQRVVSRY*EVYRERMHHLLQW 416 + +W L LC + +CG N R L+R + R + + ERM + W Sbjct: 9 QLLWLLLLCGTCARVCGCN-ETRMLER-LPRCGKTFAERMREVAVW 52
>VEGFD_HUMAN (O43915) Vascular endothelial growth factor D precursor (VEGF-D)| (c-fos-induced growth factor) (FIGF) Length = 354 Score = 28.1 bits (61), Expect = 9.9 Identities = 10/19 (52%), Positives = 11/19 (57%) Frame = -3 Query: 194 FHHDMCSCENHVQEHYSPC 138 FH D CSCE+ H PC Sbjct: 307 FHPDTCSCEDRCPFHTRPC 325
>ADA33_HUMAN (Q9BZ11) ADAM 33 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain 33) Length = 813 Score = 28.1 bits (61), Expect = 9.9 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = +3 Query: 156 LYMIFTAAHVMVKSLPLNYTKQRLLLCTNYMD 251 LY++ + + LN+TKQRLL NY+D Sbjct: 214 LYIVADHTLFLTRHRNLNHTKQRLLEVANYVD 245
>ST14_HUMAN (Q9Y5Y6) Suppressor of tumorigenicity protein 14 (EC 3.4.21.-)| (Serine protease 14) (Matriptase) (Membrane-type serine protease 1) (MT-SP1) (Prostamin) (Serine protease TADG-15) (Tumor-associated differentially-expressed gene 15 protein) Length = 855 Score = 28.1 bits (61), Expect = 9.9 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 4/33 (12%) Frame = -2 Query: 324 RCSSCSGKGRVTRRTYPMPWIPIPYP----CSW 238 R SSC G+ R + T+ P+ P YP C+W Sbjct: 336 RMSSCGGRLRKAQGTFNSPYYPGHYPPNIDCTW 368 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 73,049,138 Number of Sequences: 219361 Number of extensions: 1537668 Number of successful extensions: 4098 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 3910 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4098 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2570413340 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)