ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl33a03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1S23A1_RAT (Q9WTW7) Solute carrier family 23 member 1 (Sodium-dep... 30 3.4
2S23A1_MOUSE (Q9Z2J0) Solute carrier family 23 member 1 (Sodium-d... 30 3.4
3S23A1_HUMAN (Q9UHI7) Solute carrier family 23 member 1 (Sodium-d... 30 3.4
4TPP1_PONPY (Q5RFL1) Tripeptidyl-peptidase 1 precursor (EC 3.4.14... 30 3.4
5C1QR1_HUMAN (Q9NPY3) Complement component C1q receptor precursor... 28 7.6
6SYY_SYNAS (Q2LR98) Tyrosyl-tRNA synthetase (EC 6.1.1.1) (Tyrosin... 28 9.9
7DNAJ_BACHD (Q9KD71) Chaperone protein dnaJ 28 9.9
8RAMP3_CAVPO (Q8R4C4) Receptor activity-modifying protein 3 precu... 28 9.9
9VEGFD_HUMAN (O43915) Vascular endothelial growth factor D precur... 28 9.9
10ADA33_HUMAN (Q9BZ11) ADAM 33 precursor (EC 3.4.24.-) (A disinteg... 28 9.9
11ST14_HUMAN (Q9Y5Y6) Suppressor of tumorigenicity protein 14 (EC ... 28 9.9

>S23A1_RAT (Q9WTW7) Solute carrier family 23 member 1 (Sodium-dependent|
           vitamin C transporter 1) (Na(+)/L-ascorbic acid
           transporter 1)
          Length = 604

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -2

Query: 270 PWIPIPYPCSW 238
           PWI IPYPC W
Sbjct: 308 PWIRIPYPCQW 318



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>S23A1_MOUSE (Q9Z2J0) Solute carrier family 23 member 1 (Sodium-dependent|
           vitamin C transporter 1) (Na(+)/L-ascorbic acid
           transporter 1) (Yolk sac permease-like molecule 3)
          Length = 605

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -2

Query: 270 PWIPIPYPCSW 238
           PWI IPYPC W
Sbjct: 308 PWIRIPYPCQW 318



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>S23A1_HUMAN (Q9UHI7) Solute carrier family 23 member 1 (Sodium-dependent|
           vitamin C transporter 1) (hSVCT1) (Na(+)/L-ascorbic acid
           transporter 1) (Yolk sac permease-like molecule 3)
          Length = 598

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -2

Query: 270 PWIPIPYPCSW 238
           PWI IPYPC W
Sbjct: 301 PWIRIPYPCQW 311



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>TPP1_PONPY (Q5RFL1) Tripeptidyl-peptidase 1 precursor (EC 3.4.14.9)|
           (Tripeptidyl-peptidase I) (TPP-I) (Tripeptidyl
           aminopeptidase)
          Length = 564

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +2

Query: 2   NQKALPWAAKAMVCTILILADAFTLYTNTSVLQGKPPSGSNKSQVYRGNNALVHDF-HSC 178
           N+  +PW +     T +      +L     +L G+PP G    ++Y+ + A + D  H C
Sbjct: 464 NRVPIPWVSGTSASTPVFGGGILSLINEHRILSGRPPLGFLNPRLYQQHGAGLFDVTHGC 523



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>C1QR1_HUMAN (Q9NPY3) Complement component C1q receptor precursor (Complement|
           component 1, q subcomponent, receptor 1) (C1qR) (C1qRp)
           (C1qR(p)) (C1q/MBL/SPA receptor) (CD93 antigen) (CDw93)
          Length = 652

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = -2

Query: 408 GGDASFLCILPSTWRLLAAVFFCYN*RHRCSSCSGKGRVT 289
           GGD SFLC     +RLL  +  C + R+ CSS   +G  T
Sbjct: 278 GGDGSFLCGCRPGFRLLDDLVTCAS-RNPCSSSPCRGGAT 316



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>SYY_SYNAS (Q2LR98) Tyrosyl-tRNA synthetase (EC 6.1.1.1) (Tyrosine--tRNA|
           ligase) (TyrRS)
          Length = 428

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
 Frame = -2

Query: 420 STIAGG----DASFLCILPSTWRLLAAVFFCYN*RHRCSSCSGKGRVTR 286
           STI  G    DAS +  +  +W  LA     Y   H C  CS K    R
Sbjct: 333 STIPRGQLSQDASAIPFIKKSWNELAKGIPAYEIMHECGLCSSKSEARR 381



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>DNAJ_BACHD (Q9KD71) Chaperone protein dnaJ|
          Length = 370

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = -2

Query: 330 RHRCSSCSGKGRVTRR 283
           +H+C++C GKG+V +R
Sbjct: 195 KHKCATCGGKGKVRKR 210



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>RAMP3_CAVPO (Q8R4C4) Receptor activity-modifying protein 3 precursor|
          Length = 146

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 279 RFVW*LCLCPSTKNICGVNYNRRRLQRVVSRY*EVYRERMHHLLQW 416
           + +W L LC +   +CG N   R L+R + R  + + ERM  +  W
Sbjct: 9   QLLWLLLLCGTCARVCGCN-ETRMLER-LPRCGKTFAERMREVAVW 52



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>VEGFD_HUMAN (O43915) Vascular endothelial growth factor D precursor (VEGF-D)|
           (c-fos-induced growth factor) (FIGF)
          Length = 354

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 194 FHHDMCSCENHVQEHYSPC 138
           FH D CSCE+    H  PC
Sbjct: 307 FHPDTCSCEDRCPFHTRPC 325



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>ADA33_HUMAN (Q9BZ11) ADAM 33 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase domain 33)
          Length = 813

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 156 LYMIFTAAHVMVKSLPLNYTKQRLLLCTNYMD 251
           LY++      + +   LN+TKQRLL   NY+D
Sbjct: 214 LYIVADHTLFLTRHRNLNHTKQRLLEVANYVD 245



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>ST14_HUMAN (Q9Y5Y6) Suppressor of tumorigenicity protein 14 (EC 3.4.21.-)|
           (Serine protease 14) (Matriptase) (Membrane-type serine
           protease 1) (MT-SP1) (Prostamin) (Serine protease
           TADG-15) (Tumor-associated differentially-expressed gene
           15 protein)
          Length = 855

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
 Frame = -2

Query: 324 RCSSCSGKGRVTRRTYPMPWIPIPYP----CSW 238
           R SSC G+ R  + T+  P+ P  YP    C+W
Sbjct: 336 RMSSCGGRLRKAQGTFNSPYYPGHYPPNIDCTW 368


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,049,138
Number of Sequences: 219361
Number of extensions: 1537668
Number of successful extensions: 4098
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4098
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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