>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 83/93 (89%), Gaps = 2/93 (2%)
 Strand = Plus / Minus

                                                                            
Query: 345      aaatgcctaagaattaacagtcagaagtccacgacataagctgcttgccctggcagtatt 404
                ||||||||||||||||   ||||||| ||  |||||||||||||||||||||| ||  ||
Sbjct: 19143413 aaatgcctaagaattat--gtcagaattctgcgacataagctgcttgccctggtagagtt 19143356

                                                 
Query: 405      gtccaagtcatcagccaaaaataagatggcata 437
                |||||||||||||||||||||||||||| ||||
Sbjct: 19143355 gtccaagtcatcagccaaaaataagatgacata 19143323



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                             
Query: 86       ctatagattaaaggaaatacaacatctta 114
                |||||||||||||||| ||||||||||||
Sbjct: 19143705 ctatagattaaaggaagtacaacatctta 19143677

>dbj|AK063403.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-A05, full
            insert sequence
          Length = 2337

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 83/93 (89%), Gaps = 2/93 (2%)
 Strand = Plus / Minus

                                                                        
Query: 345  aaatgcctaagaattaacagtcagaagtccacgacataagctgcttgccctggcagtatt 404
            ||||||||||||||||   ||||||| ||  |||||||||||||||||||||| ||  ||
Sbjct: 1985 aaatgcctaagaattat--gtcagaattctgcgacataagctgcttgccctggtagagtt 1928

                                             
Query: 405  gtccaagtcatcagccaaaaataagatggcata 437
            |||||||||||||||||||||||||||| ||||
Sbjct: 1927 gtccaagtcatcagccaaaaataagatgacata 1895



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 86   ctatagattaaaggaaatacaacatctta 114
            |||||||||||||||| ||||||||||||
Sbjct: 2277 ctatagattaaaggaagtacaacatctta 2249

>emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053B21,
             complete sequence
          Length = 151936

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 83/93 (89%), Gaps = 2/93 (2%)
 Strand = Plus / Minus

                                                                         
Query: 345   aaatgcctaagaattaacagtcagaagtccacgacataagctgcttgccctggcagtatt 404
             ||||||||||||||||   ||||||| ||  |||||||||||||||||||||| ||  ||
Sbjct: 76933 aaatgcctaagaattat--gtcagaattctgcgacataagctgcttgccctggtagagtt 76876

                                              
Query: 405   gtccaagtcatcagccaaaaataagatggcata 437
             |||||||||||||||||||||||||||| ||||
Sbjct: 76875 gtccaagtcatcagccaaaaataagatgacata 76843



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                          
Query: 86    ctatagattaaaggaaatacaacatctta 114
             |||||||||||||||| ||||||||||||
Sbjct: 77225 ctatagattaaaggaagtacaacatctta 77197

>gb|AY110082.1| Zea mays CL50599_1 mRNA sequence
          Length = 821

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 47/51 (92%)
 Strand = Plus / Plus

                                                              
Query: 384 gctgcttgccctggcagtattgtccaagtcatcagccaaaaataagatggc 434
           |||||||||||||| ||| ||||||||| |||||||| |||||||||||||
Sbjct: 443 gctgcttgccctggaagtgttgtccaagccatcagccgaaaataagatggc 493



 Score = 46.1 bits (23), Expect = 0.096
 Identities = 35/38 (92%), Gaps = 2/38 (5%)
 Strand = Plus / Plus

                                                 
Query: 339 tgttagaaatgcctaagaattaaca--gtcagaagtcc 374
           |||||| ||||||||||||||||||  |||||||||||
Sbjct: 388 tgttaggaatgcctaagaattaacaaggtcagaagtcc 425

>gb|AC151912.1| Pan troglodytes chromosome X clone PTB-093M21 map human ortholog q26.2,
              complete sequence
          Length = 180904

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 85     gctatagattaaaggaaatacaacatc 111
              |||||||||| ||||||||||||||||
Sbjct: 148431 gctatagatttaaggaaatacaacatc 148457

>emb|CR385039.8| Zebrafish DNA sequence from clone DKEYP-31D1 in linkage group 24,
             complete sequence
          Length = 166302

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 117   taaatttggtacattaataattt 139
             |||||||||||||||||||||||
Sbjct: 51137 taaatttggtacattaataattt 51115

>ref|NM_111250.2| Arabidopsis thaliana binding AT3G03790 transcript variant
           AT3G03790.1 mRNA, complete cds
          Length = 4023

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 290 tgcttcttttactctagaaga 310
           |||||||||||||||||||||
Sbjct: 851 tgcttcttttactctagaaga 871

>ref|NM_202484.1| Arabidopsis thaliana binding AT3G03790 transcript variant
           AT3G03790.2 mRNA, complete cds
          Length = 4032

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 290 tgcttcttttactctagaaga 310
           |||||||||||||||||||||
Sbjct: 851 tgcttcttttactctagaaga 871

>gb|AC009540.6|ATAC009540 Arabidopsis thaliana chromosome III BAC F20H23 genomic sequence,
             complete sequence
          Length = 101410

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 290   tgcttcttttactctagaaga 310
             |||||||||||||||||||||
Sbjct: 53272 tgcttcttttactctagaaga 53252

>emb|AL049539.21|HSJ836N17 Human DNA sequence from clone RP5-836N17 on chromosome 20q11.1-11.21
             Contains the 3' end of the HCK for hemopoietic cell
             kinase, the gene for novel protein (KIAA0255), the RPL24P1
             gene for ribosomal protein L24 pseudogene 1 and two CpG
             Islands, complete sequence
          Length = 111694

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 33    ttcaaatcagaattttgaaatcatcaagt 61
             ||||| ||||||||| |||||||||||||
Sbjct: 39515 ttcaactcagaatttggaaatcatcaagt 39487

>dbj|AK117198.1| Arabidopsis thaliana At3g03790 mRNA for unknown protein, complete
           cds, clone: RAFL16-74-J10
          Length = 4024

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 290 tgcttcttttactctagaaga 310
           |||||||||||||||||||||
Sbjct: 851 tgcttcttttactctagaaga 871

>ref|XM_633867.1| Dictyostelium discoideum hypothetical protein (DDB0185622), partial
           mRNA
          Length = 882

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 108 catcttaggtaaatttggta 127
           ||||||||||||||||||||
Sbjct: 792 catcttaggtaaatttggta 811

>gb|AC150919.6| Bos taurus  BAC CH240-303F16 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 160376

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 33    ttcaaatcagaattttgaaa 52
             ||||||||||||||||||||
Sbjct: 47258 ttcaaatcagaattttgaaa 47239

>gb|AC135114.4| Mus musculus BAC clone RP24-69H7 from chromosome 14, complete sequence
          Length = 181062

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 33     ttcaaatcagaattttgaaatcat 56
              ||||| ||||||||||||||||||
Sbjct: 180291 ttcaagtcagaattttgaaatcat 180268

>gb|AC122933.4| Mus musculus BAC clone RP23-18P3 from 14, complete sequence
          Length = 224941

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 33    ttcaaatcagaattttgaaatcat 56
             ||||| ||||||||||||||||||
Sbjct: 23816 ttcaagtcagaattttgaaatcat 23793

>gb|AC131723.1| Mus musculus BAC clone RP23-144E24 from 1, complete sequence
          Length = 200656

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 32     gttcaaatcagaattttgaa 51
              ||||||||||||||||||||
Sbjct: 171292 gttcaaatcagaattttgaa 171273

>gb|AC022202.12| Homo sapiens BAC clone RP11-321E8 from 7, complete sequence
          Length = 95097

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    caaatcagaattttgaaatc 54
             ||||||||||||||||||||
Sbjct: 51195 caaatcagaattttgaaatc 51214

>emb|AL513527.9| Human DNA sequence from clone RP11-530M23 on chromosome 6 Contains part
             of the LAMA2 gene for laminin, alpha 2 (merosin,
             congenital muscular dystrophy) (LAMM), complete sequence
          Length = 139123

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 347   atgcctaagaattaacagtcagaa 370
             |||||||||||||| |||||||||
Sbjct: 82540 atgcctaagaattatcagtcagaa 82517

>emb|BX927378.12| Zebrafish DNA sequence from clone CH211-116K3 in linkage group 5,
              complete sequence
          Length = 123661

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 169    tcccccctcaaacttgatgg 188
              ||||||||||||||||||||
Sbjct: 102925 tcccccctcaaacttgatgg 102906

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 87       tatagattaaaggaaataca 106
                ||||||||||||||||||||
Sbjct: 16535510 tatagattaaaggaaataca 16535529

>dbj|AP004728.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0583E12
          Length = 152449

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 87    tatagattaaaggaaataca 106
             ||||||||||||||||||||
Sbjct: 31490 tatagattaaaggaaataca 31509

>emb|AL136969.7| Human DNA sequence from clone RP1-207J11 on chromosome 7 Contains
            ESTs and STSs. Contains two zinc finger protein
            pseudogenes, a putative novel gene and an HNRPC
            (heterogeneous nuclear ribonucleoprotein C (C1/C2))
            pseudogene, complete sequence
          Length = 79666

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 35   caaatcagaattttgaaatc 54
            ||||||||||||||||||||
Sbjct: 1869 caaatcagaattttgaaatc 1888


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,999,107
Number of Sequences: 3902068
Number of extensions: 3999107
Number of successful extensions: 68998
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68913
Number of HSP's gapped (non-prelim): 82
length of query: 441
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 419
effective length of database: 17,147,199,772
effective search space: 7184676704468
effective search space used: 7184676704468
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)