ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl33a01 |
|---|---|
| Clone Library Name | barley_pub |
>COPG2_MOUSE (Q9QXK3) Coatomer subunit gamma-2 (Gamma-2 coat protein) (Gamma-2| COP) Length = 871 Score = 51.6 bits (122), Expect = 4e-07 Identities = 28/66 (42%), Positives = 40/66 (60%) Frame = -2 Query: 387 EAVSAVISILGMQPCEGTDVVQNNSRSHTCLLSGVLIGNVKVLVRLSFGISGPKEVAMKL 208 EAV+ +I+ LGMQPCE +D V N SH+ L+GV G +LVR ++ V M++ Sbjct: 796 EAVNNIITFLGMQPCERSDKVPENKNSHSLYLAGVYRGGYDLLVRSRLALA--DGVTMQV 853 Query: 207 AVRSDD 190 VRS + Sbjct: 854 TVRSKE 859
>COPG2_HUMAN (Q9UBF2) Coatomer subunit gamma-2 (Gamma-2 coat protein) (Gamma-2| COP) Length = 871 Score = 51.6 bits (122), Expect = 4e-07 Identities = 27/66 (40%), Positives = 40/66 (60%) Frame = -2 Query: 387 EAVSAVISILGMQPCEGTDVVQNNSRSHTCLLSGVLIGNVKVLVRLSFGISGPKEVAMKL 208 EAV+ +I+ LGMQPCE +D V N SH+ L+G+ G +LVR ++ V M++ Sbjct: 796 EAVNNIITFLGMQPCERSDKVPENKNSHSLYLAGIFRGGYDLLVRSRLALA--DGVTMQV 853 Query: 207 AVRSDD 190 VRS + Sbjct: 854 TVRSKE 859
>COPG_CAEEL (Q22498) Probable coatomer subunit gamma (Gamma-coat protein)| (Gamma-COP) Length = 870 Score = 50.1 bits (118), Expect = 1e-06 Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 1/74 (1%) Frame = -2 Query: 387 EAVSAVISILGMQPCEGTDVVQNNSRSHTCLLSGVLIGNVKVLVRLSFGIS-GPKEVAMK 211 +AV + ILG+ PCE +D V HT LSGV G VL + + + +AM Sbjct: 792 DAVKKISEILGLVPCERSDRVPEGKTQHTVFLSGVFRGGYDVLSKATVAVDPNDNSIAMN 851 Query: 210 LAVRSDDPEVSDRI 169 + ++S++P V+D + Sbjct: 852 IIIKSNEPLVADLV 865
>COPG_HUMAN (Q9Y678) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)| Length = 874 Score = 48.1 bits (113), Expect = 5e-06 Identities = 22/45 (48%), Positives = 29/45 (64%) Frame = -2 Query: 387 EAVSAVISILGMQPCEGTDVVQNNSRSHTCLLSGVLIGNVKVLVR 253 EAV ++ LGM PCE +D V +N +HT LL+GV G +LVR Sbjct: 799 EAVGNIVKFLGMHPCERSDKVPDNKNTHTLLLAGVFRGGHDILVR 843
>COPG_BOVIN (P53620) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)| Length = 874 Score = 48.1 bits (113), Expect = 5e-06 Identities = 22/45 (48%), Positives = 29/45 (64%) Frame = -2 Query: 387 EAVSAVISILGMQPCEGTDVVQNNSRSHTCLLSGVLIGNVKVLVR 253 EAV ++ LGM PCE +D V +N +HT LL+GV G +LVR Sbjct: 799 EAVGNIVKFLGMHPCERSDKVPDNKNTHTLLLAGVFRGGHDILVR 843
>COPG_SCHPO (P87140) Probable coatomer subunit gamma (Gamma-coat protein)| (Gamma-COP) Length = 905 Score = 31.6 bits (70), Expect = 0.48 Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 1/78 (1%) Frame = -2 Query: 378 SAVISILGMQPCEGTDVVQNNSRSHTCLLSGVLIGNVKVLVRLSFGISGPKE-VAMKLAV 202 S V +L MQP EGT+ + H LSG L+ KVL + S E + +K+ Sbjct: 831 SRVAELLQMQPLEGTE-NPTDKPVHVMKLSGKLVNGEKVLALVKMAHSKDGEGITIKVIA 889 Query: 201 RSDDPEVSDRIHEIVANG 148 R + SD E+V G Sbjct: 890 RGE----SDSSVELVVGG 903
>YDAM_ECOLI (P77302) Hypothetical protein ydaM| Length = 430 Score = 31.2 bits (69), Expect = 0.63 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = -1 Query: 373 CYKHPWHAALRGNRCCPKQFEIAHLP 296 C KH W + G R P EI+HLP Sbjct: 192 CQKHTWEINMLGRRVMPIMHEISHLP 217
>YDAM_ECO57 (Q8X8Q3) Hypothetical protein ydaM| Length = 430 Score = 31.2 bits (69), Expect = 0.63 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = -1 Query: 373 CYKHPWHAALRGNRCCPKQFEIAHLP 296 C KH W + G R P EI+HLP Sbjct: 192 CQKHTWEINMLGRRVMPIMHEISHLP 217
>NUGC_SOYBN (P31174) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 158 Score = 30.8 bits (68), Expect = 0.82 Identities = 14/36 (38%), Positives = 22/36 (61%) Frame = -2 Query: 288 GVLIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 181 G L+ +V L RL +GI P+EV +K+ V +P + Sbjct: 62 GGLLASVYHLTRLEYGIDQPEEVCIKIFVARKNPRI 97
>NUGC_WHEAT (Q95H60) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = -2 Query: 288 GVLIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 181 G + +V L R+ +GI P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_SACOF (Q6ENW0) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = -2 Query: 288 GVLIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 181 G + +V L R+ +GI P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_SACHY (Q6L396) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = -2 Query: 288 GVLIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 181 G + +V L R+ +GI P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_ORYSA (P12200) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = -2 Query: 288 GVLIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 181 G + +V L R+ +GI P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_ORYNI (Q6ENH1) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = -2 Query: 288 GVLIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 181 G + +V L R+ +GI P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_MAIZE (P19124) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = -2 Query: 288 GVLIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 181 G + +V L R+ +GI P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>REXO3_YARLI (Q6CFE7) RNA exonuclease 3 (EC 3.1.-.-)| Length = 757 Score = 30.4 bits (67), Expect = 1.1 Identities = 20/57 (35%), Positives = 28/57 (49%) Frame = +2 Query: 149 PFATISWILSLTSGSSDLTASFMATSFGPLIPNDSLTKTFTLPMSTPESRQVCDLEL 319 PF T+S SL + +S T++ TS P+ TKT + P STP L+L Sbjct: 466 PFRTVSTSESLDTSTSTSTSTSATTS----APSAKSTKTASRPASTPTKSLTSSLDL 518
>SLS1_YEAST (P42900) Sigma-like sequence protein 1, mitochondrial precursor| (Protein SLS1) Length = 643 Score = 29.6 bits (65), Expect = 1.8 Identities = 19/44 (43%), Positives = 26/44 (59%) Frame = +2 Query: 149 PFATISWILSLTSGSSDLTASFMATSFGPLIPNDSLTKTFTLPM 280 P +IS LS+T G S +ASF ++ F PLI ++K LPM Sbjct: 386 PSDSISQSLSITLGHSLQSASF-SSIFQPLIHKSFISKLLNLPM 428
>DLEC1_HUMAN (Q9Y238) Deleted in lung and esophageal cancer protein 1 (Deleted in| lung cancer protein 1) (DLC-1) Length = 1755 Score = 28.9 bits (63), Expect = 3.1 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%) Frame = +2 Query: 173 LSLTSGSSDLTASFMATSFGPLIPN-DSLTKTFTLPMSTPESRQVCDLELFWTTSVP 340 L TS + D A FG + D++T+T L S+P CD+ L W T VP Sbjct: 1245 LRTTSYTIDQAQKEPAMRFGTQVSGGDTVTRTLRLNNSSP-----CDIRLDWETYVP 1296
>TESK1_RAT (Q63572) Dual specificity testis-specific protein kinase 1 (EC| 2.7.12.1) (Testicular protein kinase 1) Length = 628 Score = 27.7 bits (60), Expect = 6.9 Identities = 17/49 (34%), Positives = 26/49 (53%) Frame = +2 Query: 233 PLIPNDSLTKTFTLPMSTPESRQVCDLELFWTTSVPSQGCMPRMLITAL 379 PL+P LT T +++PES + + S+PS +PR + TAL Sbjct: 406 PLVPPSPLTSTQLPLVASPESLVQPETPVRRCRSLPSSPELPRRMETAL 454
>MMP1_MYCLE (P46841) Major membrane protein I (MMP-I) (35 kDa antigen)| Length = 307 Score = 27.7 bits (60), Expect = 6.9 Identities = 17/52 (32%), Positives = 27/52 (51%) Frame = +2 Query: 158 TISWILSLTSGSSDLTASFMATSFGPLIPNDSLTKTFTLPMSTPESRQVCDL 313 TIS +L + + SDL +S P+D +T+ L + T + RQ C+L Sbjct: 94 TISTLLDIHTRVSDLYSS----------PHDQITQQLRLTIETIKERQECEL 135
>SYD_BRUSU (P67013) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 595 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/41 (31%), Positives = 18/41 (43%) Frame = +2 Query: 227 FGPLIPNDSLTKTFTLPMSTPESRQVCDLELFWTTSVPSQG 349 F +I ND+ + + +P T SR CD W S G Sbjct: 314 FANMIANDAKVEVWAIPAKTGGSRAFCDRMNSWAQSEGQPG 354
>SYD_BRUME (P67012) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 595 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/41 (31%), Positives = 18/41 (43%) Frame = +2 Query: 227 FGPLIPNDSLTKTFTLPMSTPESRQVCDLELFWTTSVPSQG 349 F +I ND+ + + +P T SR CD W S G Sbjct: 314 FANMIANDAKVEVWAIPAKTGGSRAFCDRMNSWAQSEGQPG 354
>SYD_BRUAB (Q57DZ8) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 595 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/41 (31%), Positives = 18/41 (43%) Frame = +2 Query: 227 FGPLIPNDSLTKTFTLPMSTPESRQVCDLELFWTTSVPSQG 349 F +I ND+ + + +P T SR CD W S G Sbjct: 314 FANMIANDAKVEVWAIPAKTGGSRAFCDRMNSWAQSEGQPG 354
>SYD_BRUA2 (Q2YNA7) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 595 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/41 (31%), Positives = 18/41 (43%) Frame = +2 Query: 227 FGPLIPNDSLTKTFTLPMSTPESRQVCDLELFWTTSVPSQG 349 F +I ND+ + + +P T SR CD W S G Sbjct: 314 FANMIANDAKVEVWAIPAKTGGSRAFCDRMNSWAQSEGQPG 354
>CDPK1_PLAFK (P62343) Calcium-dependent protein kinase 1 (EC 2.7.11.1) (PfCPK)| (PfCDPK1) Length = 523 Score = 27.3 bits (59), Expect = 9.1 Identities = 11/25 (44%), Positives = 18/25 (72%) Frame = +3 Query: 99 SQNNKKVNQKTLAGSFSHLQQFHGS 173 + N K +QKTL G+ S++++F GS Sbjct: 328 ANNINKSDQKTLCGALSNMRKFEGS 352
>CDPK1_PLAF7 (P62344) Calcium-dependent protein kinase 1 (EC 2.7.11.1)| Length = 523 Score = 27.3 bits (59), Expect = 9.1 Identities = 11/25 (44%), Positives = 18/25 (72%) Frame = +3 Query: 99 SQNNKKVNQKTLAGSFSHLQQFHGS 173 + N K +QKTL G+ S++++F GS Sbjct: 328 ANNINKSDQKTLCGALSNMRKFEGS 352
>SYS_STAES (Q8CU95) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)| (SerRS) Length = 428 Score = 27.3 bits (59), Expect = 9.1 Identities = 10/24 (41%), Positives = 18/24 (75%) Frame = -2 Query: 231 PKEVAMKLAVRSDDPEVSDRIHEI 160 P++V K+ +R DDP+V D++ E+ Sbjct: 11 PEKVKSKIELRGDDPKVVDQVLEL 34
>SYS_STAEQ (Q5HK07) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)| (SerRS) Length = 428 Score = 27.3 bits (59), Expect = 9.1 Identities = 10/24 (41%), Positives = 18/24 (75%) Frame = -2 Query: 231 PKEVAMKLAVRSDDPEVSDRIHEI 160 P++V K+ +R DDP+V D++ E+ Sbjct: 11 PEKVKSKIELRGDDPKVVDQVLEL 34
>CDPK1_PLAYO (Q7RAH3) Calcium-dependent protein kinase 1 (EC 2.7.11.1)| Length = 534 Score = 27.3 bits (59), Expect = 9.1 Identities = 11/25 (44%), Positives = 18/25 (72%) Frame = +3 Query: 99 SQNNKKVNQKTLAGSFSHLQQFHGS 173 + N K +QKTL G+ S++++F GS Sbjct: 327 ANNINKSDQKTLCGALSNMRKFEGS 351 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,692,540 Number of Sequences: 219361 Number of extensions: 828377 Number of successful extensions: 2019 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 1998 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2019 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 1380984984 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
