ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl33a01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_477026.1| Oryza sativa (japonica cultivar-group), mRNA 278 1e-71
2dbj|AK100095.1| Oryza sativa (japonica cultivar-group) cDNA clon... 278 1e-71
3gb|BT017026.1| Zea mays clone EK07D2312G12.c mRNA sequence 226 4e-56
4dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 202 6e-49
5dbj|AP005171.3| Oryza sativa (japonica cultivar-group) genomic D... 202 6e-49
6dbj|AP005259.3| Oryza sativa (japonica cultivar-group) genomic D... 202 6e-49
7gb|BT017505.1| Zea mays clone EL01N0414H09.c mRNA sequence 176 3e-41
8ref|NM_187618.1| Oryza sativa (japonica cultivar-group), predic... 153 5e-34
9dbj|AK068454.1| Oryza sativa (japonica cultivar-group) cDNA clon... 153 5e-34
10gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 100 7e-18
11gb|AC104473.2| Oryza sativa (japonica cultivar-group) chromosome... 100 7e-18
12dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 100 7e-18
13gb|AY111369.1| Zea mays CL858_1 mRNA sequence 64 4e-07
14gb|AY389774.1| Hyacinthus orientalis coatomer protein gamma subu... 62 1e-06
15dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
16dbj|AP004665.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
17dbj|AP004564.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
18dbj|AP006864.1| Lotus japonicus genomic DNA, chromosome 3, clone... 42 1.3
19gb|AC129981.9| Mus musculus chromosome 5, clone RP23-114I13, com... 40 5.2
20gb|AY544051.1| Salmo salar clone Rsa473 microsatellite sequence 40 5.2
21gb|AC116324.6| Mus musculus BAC clone RP23-282P1 from 16, comple... 40 5.2
22gb|AC126722.7| Rattus norvegicus 4 BAC CH230-5L13 (Children's Ho... 40 5.2
23emb|BX321857.1| Nitrosomonas europaea ATCC 19718, complete genom... 40 5.2
24emb|BX649413.8| Mouse DNA sequence from clone RP23-193P21 on chr... 40 5.2
25gb|BC091386.1| Rattus norvegicus hypothetical protein LOC310665,... 40 5.2
26ref|NM_001025118.1| Rattus norvegicus hypothetical protein LOC31... 40 5.2
27gb|DQ067593.1| Cocksfoot streak virus isolate UK-1-04 GHCP619C H... 40 5.2
28gb|DQ067592.1| Cocksfoot streak virus isolate UK-1-04 GHCP619B H... 40 5.2
29gb|DQ067591.1| Cocksfoot streak virus isolate UK-1-04 GHCP619A H... 40 5.2
30dbj|AK031002.1| Mus musculus adult male thymus cDNA, RIKEN full-... 40 5.2
31emb|AL929238.22| Mouse DNA sequence from clone RP23-480I16 on ch... 40 5.2
32gb|AC068129.6| Homo sapiens BAC clone RP11-619F9 from 2, complet... 40 5.2
33emb|BX005450.9| Zebrafish DNA sequence from clone CH211-150O23, ... 40 5.2
34emb|BX119907.8| Zebrafish DNA sequence from clone CH211-208D14 i... 40 5.2
35emb|CR854912.18| Zebrafish DNA sequence from clone DKEY-39O12 in... 40 5.2
36emb|BX914207.15| Zebrafish DNA sequence from clone DKEY-158P11 i... 40 5.2
37emb|CT025771.7| Zebrafish DNA sequence from clone DKEY-20I10 in ... 40 5.2
38emb|AL935150.10| Mouse DNA sequence from clone RP24-482A24 on ch... 40 5.2 
>ref|XM_477026.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3193

 Score =  278 bits (140), Expect = 1e-71
 Identities = 221/248 (89%)
 Strand = Plus / Minus

                                                                        
Query: 144  tttagccatttgcaacaatttcatggatcctgtcactgacctccggatcatctgatctga 203
            |||||||||||||||| |||||||||||| ||||||||| ||| ||||||||||||||||
Sbjct: 2900 tttagccatttgcaacgatttcatggatcttgtcactgatctcaggatcatctgatctga 2841

                                                                        
Query: 204  cagctagcttcatggccacttctttcggcccgctgattccaaatgatagtctcaccaaaa 263
            | |||||||||||||||||||| ||||| ||||| | ||| ||||| || ||||| ||||
Sbjct: 2840 ctgctagcttcatggccacttccttcggtccgctaagtccgaatgacagcctcactaaaa 2781

                                                                        
Query: 264  ctttcacattaccgatgagcacacctgaaagcaggcaagtgtgcgatctcgaattgtttt 323
            |||||||||| ||||| | |||||| || |||||||||||||| || ||||||||| || 
Sbjct: 2780 ctttcacattgccgataaacacaccagatagcaggcaagtgtgtgacctcgaattgcttg 2721

                                                                        
Query: 324  ggacaacatcggttccctcgcaaggctgcatgccaaggatgcttataacagcactcacag 383
            |||| ||||| ||||||||||| ||||||||||||||||||| ||| |||||||||||||
Sbjct: 2720 ggaccacatcagttccctcgcagggctgcatgccaaggatgcctatgacagcactcacag 2661

                    
Query: 384  cctcagcc 391
            ||||||||
Sbjct: 2660 cctcagcc 2653
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>dbj|AK100095.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004B12, full
            insert sequence
          Length = 3193

 Score =  278 bits (140), Expect = 1e-71
 Identities = 221/248 (89%)
 Strand = Plus / Minus

                                                                        
Query: 144  tttagccatttgcaacaatttcatggatcctgtcactgacctccggatcatctgatctga 203
            |||||||||||||||| |||||||||||| ||||||||| ||| ||||||||||||||||
Sbjct: 2900 tttagccatttgcaacgatttcatggatcttgtcactgatctcaggatcatctgatctga 2841

                                                                        
Query: 204  cagctagcttcatggccacttctttcggcccgctgattccaaatgatagtctcaccaaaa 263
            | |||||||||||||||||||| ||||| ||||| | ||| ||||| || ||||| ||||
Sbjct: 2840 ctgctagcttcatggccacttccttcggtccgctaagtccgaatgacagcctcactaaaa 2781

                                                                        
Query: 264  ctttcacattaccgatgagcacacctgaaagcaggcaagtgtgcgatctcgaattgtttt 323
            |||||||||| ||||| | |||||| || |||||||||||||| || ||||||||| || 
Sbjct: 2780 ctttcacattgccgataaacacaccagatagcaggcaagtgtgtgacctcgaattgcttg 2721

                                                                        
Query: 324  ggacaacatcggttccctcgcaaggctgcatgccaaggatgcttataacagcactcacag 383
            |||| ||||| ||||||||||| ||||||||||||||||||| ||| |||||||||||||
Sbjct: 2720 ggaccacatcagttccctcgcagggctgcatgccaaggatgcctatgacagcactcacag 2661

                    
Query: 384  cctcagcc 391
            ||||||||
Sbjct: 2660 cctcagcc 2653
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>gb|BT017026.1| Zea mays clone EK07D2312G12.c mRNA sequence
          Length = 1125

 Score =  226 bits (114), Expect = 4e-56
 Identities = 216/250 (86%)
 Strand = Plus / Minus

                                                                       
Query: 142 gttttagccatttgcaacaatttcatggatcctgtcactgacctccggatcatctgatct 201
           |||||||||||| || |||||||| |||||||||||||||| ||| |||||||| |||||
Sbjct: 960 gttttagccattagcgacaatttcgtggatcctgtcactgatctctggatcatcagatct 901

                                                                       
Query: 202 gacagctagcttcatggccacttctttcggcccgctgattccaaatgatagtctcaccaa 261
            || || |||||||||||||| || |||||  | || ||||||||||| |||||||||||
Sbjct: 900 aactgccagcttcatggccacctccttcggtgcactaattccaaatgacagtctcaccaa 841

                                                                       
Query: 262 aactttcacattaccgatgagcacacctgaaagcaggcaagtgtgcgatctcgaattgtt 321
            |||||||| || || || | |||||| || ||||| ||||||||||| || |||||| |
Sbjct: 840 gactttcacgttgccaataaacacaccagagagcagacaagtgtgcgaccttgaattgct 781

                                                                       
Query: 322 ttggacaacatcggttccctcgcaaggctgcatgccaaggatgcttataacagcactcac 381
           | |||| || || |||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 780 tgggaccacgtcagttccctcacaaggctgcatgccaaggatgcttataacagcacttac 721

                     
Query: 382 agcctcagcc 391
           ||||||||||
Sbjct: 720 agcctcagcc 711
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  202 bits (102), Expect = 6e-49
 Identities = 174/198 (87%)
 Strand = Plus / Minus

                                                                           
Query: 144     tttagccatttgcaacaatttcatggatcctgtcactgacctccggatcatctgatctga 203
               |||||||||||||||| |||||||||||| ||||||||| ||| ||||||||||||||||
Sbjct: 5491408 tttagccatttgcaacgatttcatggatcttgtcactgatctcaggatcatctgatctga 5491349

                                                                           
Query: 204     cagctagcttcatggccacttctttcggcccgctgattccaaatgatagtctcaccaaaa 263
               | |||||||||||||||||||| ||||| ||||| | ||| ||||| || ||||| ||||
Sbjct: 5491348 ctgctagcttcatggccacttccttcggtccgctaagtccgaatgacagcctcactaaaa 5491289

                                                                           
Query: 264     ctttcacattaccgatgagcacacctgaaagcaggcaagtgtgcgatctcgaattgtttt 323
               |||||||||| ||||| | |||||| || |||||||||||||| || ||||||||| || 
Sbjct: 5491288 ctttcacattgccgataaacacaccagatagcaggcaagtgtgtgacctcgaattgcttg 5491229

                                 
Query: 324     ggacaacatcggttccct 341
               |||| ||||| |||||||
Sbjct: 5491228 ggaccacatcagttccct 5491211



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 50/53 (94%)
 Strand = Plus / Minus

                                                                    
Query: 339     cctcgcaaggctgcatgccaaggatgcttataacagcactcacagcctcagcc 391
               ||||||| ||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 5490995 cctcgcagggctgcatgccaaggatgcctatgacagcactcacagcctcagcc 5490943
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>dbj|AP005171.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
            clone:OSJNBa0081K20
          Length = 117287

 Score =  202 bits (102), Expect = 6e-49
 Identities = 174/198 (87%)
 Strand = Plus / Minus

                                                                        
Query: 144  tttagccatttgcaacaatttcatggatcctgtcactgacctccggatcatctgatctga 203
            |||||||||||||||| |||||||||||| ||||||||| ||| ||||||||||||||||
Sbjct: 4493 tttagccatttgcaacgatttcatggatcttgtcactgatctcaggatcatctgatctga 4434

                                                                        
Query: 204  cagctagcttcatggccacttctttcggcccgctgattccaaatgatagtctcaccaaaa 263
            | |||||||||||||||||||| ||||| ||||| | ||| ||||| || ||||| ||||
Sbjct: 4433 ctgctagcttcatggccacttccttcggtccgctaagtccgaatgacagcctcactaaaa 4374

                                                                        
Query: 264  ctttcacattaccgatgagcacacctgaaagcaggcaagtgtgcgatctcgaattgtttt 323
            |||||||||| ||||| | |||||| || |||||||||||||| || ||||||||| || 
Sbjct: 4373 ctttcacattgccgataaacacaccagatagcaggcaagtgtgtgacctcgaattgcttg 4314

                              
Query: 324  ggacaacatcggttccct 341
            |||| ||||| |||||||
Sbjct: 4313 ggaccacatcagttccct 4296



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 50/53 (94%)
 Strand = Plus / Minus

                                                                 
Query: 339  cctcgcaaggctgcatgccaaggatgcttataacagcactcacagcctcagcc 391
            ||||||| ||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 4080 cctcgcagggctgcatgccaaggatgcctatgacagcactcacagcctcagcc 4028
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>dbj|AP005259.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0519E02
          Length = 139321

 Score =  202 bits (102), Expect = 6e-49
 Identities = 174/198 (87%)
 Strand = Plus / Minus

                                                                          
Query: 144    tttagccatttgcaacaatttcatggatcctgtcactgacctccggatcatctgatctga 203
              |||||||||||||||| |||||||||||| ||||||||| ||| ||||||||||||||||
Sbjct: 125389 tttagccatttgcaacgatttcatggatcttgtcactgatctcaggatcatctgatctga 125330

                                                                          
Query: 204    cagctagcttcatggccacttctttcggcccgctgattccaaatgatagtctcaccaaaa 263
              | |||||||||||||||||||| ||||| ||||| | ||| ||||| || ||||| ||||
Sbjct: 125329 ctgctagcttcatggccacttccttcggtccgctaagtccgaatgacagcctcactaaaa 125270

                                                                          
Query: 264    ctttcacattaccgatgagcacacctgaaagcaggcaagtgtgcgatctcgaattgtttt 323
              |||||||||| ||||| | |||||| || |||||||||||||| || ||||||||| || 
Sbjct: 125269 ctttcacattgccgataaacacaccagatagcaggcaagtgtgtgacctcgaattgcttg 125210

                                
Query: 324    ggacaacatcggttccct 341
              |||| ||||| |||||||
Sbjct: 125209 ggaccacatcagttccct 125192



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 50/53 (94%)
 Strand = Plus / Minus

                                                                   
Query: 339    cctcgcaaggctgcatgccaaggatgcttataacagcactcacagcctcagcc 391
              ||||||| ||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 124976 cctcgcagggctgcatgccaaggatgcctatgacagcactcacagcctcagcc 124924
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>gb|BT017505.1| Zea mays clone EL01N0414H09.c mRNA sequence
          Length = 886

 Score =  176 bits (89), Expect = 3e-41
 Identities = 197/233 (84%)
 Strand = Plus / Minus

                                                                       
Query: 159 caatttcatggatcctgtcactgacctccggatcatctgatctgacagctagcttcatgg 218
           ||||||| |||||| ||||||||| ||| |||||||| ||||| || || || |||||||
Sbjct: 679 caatttcgtggatcttgtcactgagctctggatcatcagatctaactgccaggttcatgg 620

                                                                       
Query: 219 ccacttctttcggcccgctgattccaaatgatagtctcaccaaaactttcacattaccga 278
           |||| || |||||  | ||||||||||| || ||||||||||| |||||||| || || |
Sbjct: 619 ccacctccttcggggcactgattccaaaggaaagtctcaccaagactttcacgttgccaa 560

                                                                       
Query: 279 tgagcacacctgaaagcaggcaagtgtgcgatctcgaattgttttggacaacatcggttc 338
           | | ||| || || ||||| ||||||||||| || |||||| || |||| || || || |
Sbjct: 559 taaccaccccagagagcagacaagtgtgcgaccttgaattgcttgggaccacgtcagtcc 500

                                                                
Query: 339 cctcgcaaggctgcatgccaaggatgcttataacagcactcacagcctcagcc 391
           |||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 499 cctcacaaggctgcatgccaaggatgcttataacagcacttacagcctcagcc 447
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>ref|NM_187618.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2481

 Score =  153 bits (77), Expect = 5e-34
 Identities = 197/237 (83%)
 Strand = Plus / Minus

                                                                        
Query: 155  gcaacaatttcatggatcctgtcactgacctccggatcatctgatctgacagctagcttc 214
            |||||||| || |||||| |||||||||| || ||||||||||| ||||| || ||||||
Sbjct: 2471 gcaacaatctcgtggatcttgtcactgacttcgggatcatctgacctgacggcaagcttc 2412

                                                                        
Query: 215  atggccacttctttcggcccgctgattccaaatgatagtctcaccaaaactttcacatta 274
            || |||||||| || |||||||| | |||||| ||||| || || | ||| ||  | |  
Sbjct: 2411 atcgccacttccttgggcccgctcagtccaaacgatagcctgacaagaaccttggcgtcg 2352

                                                                        
Query: 275  ccgatgagcacacctgaaagcaggcaagtgtgcgatctcgaattgttttggacaacatcg 334
            ||||||| |||||| || |||||||||||||||||||| | ||| ||| | ||||| || 
Sbjct: 2351 ccgatgaacacaccagacagcaggcaagtgtgcgatcttgcattctttggtacaacctca 2292

                                                                     
Query: 335  gttccctcgcaaggctgcatgccaaggatgcttataacagcactcacagcctcagcc 391
            || ||||| ||||||||||| |||||||| || || |||||||||||||||||||||
Sbjct: 2291 gtgccctcacaaggctgcataccaaggatactaatgacagcactcacagcctcagcc 2235
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>dbj|AK068454.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155G01, full
            insert sequence
          Length = 3214

 Score =  153 bits (77), Expect = 5e-34
 Identities = 197/237 (83%)
 Strand = Plus / Minus

                                                                        
Query: 155  gcaacaatttcatggatcctgtcactgacctccggatcatctgatctgacagctagcttc 214
            |||||||| || |||||| |||||||||| || ||||||||||| ||||| || ||||||
Sbjct: 2825 gcaacaatctcgtggatcttgtcactgacttcgggatcatctgacctgacggcaagcttc 2766

                                                                        
Query: 215  atggccacttctttcggcccgctgattccaaatgatagtctcaccaaaactttcacatta 274
            || |||||||| || |||||||| | |||||| ||||| || || | ||| ||  | |  
Sbjct: 2765 atcgccacttccttgggcccgctcagtccaaacgatagcctgacaagaaccttggcgtcg 2706

                                                                        
Query: 275  ccgatgagcacacctgaaagcaggcaagtgtgcgatctcgaattgttttggacaacatcg 334
            ||||||| |||||| || |||||||||||||||||||| | ||| ||| | ||||| || 
Sbjct: 2705 ccgatgaacacaccagacagcaggcaagtgtgcgatcttgcattctttggtacaacctca 2646

                                                                     
Query: 335  gttccctcgcaaggctgcatgccaaggatgcttataacagcactcacagcctcagcc 391
            || ||||| ||||||||||| |||||||| || || |||||||||||||||||||||
Sbjct: 2645 gtgccctcacaaggctgcataccaaggatactaatgacagcactcacagcctcagcc 2589
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 131/158 (82%)
 Strand = Plus / Minus

                                                                           
Query: 155     gcaacaatttcatggatcctgtcactgacctccggatcatctgatctgacagctagcttc 214
               |||||||| || |||||| |||||||||| || ||||||||||| ||||| || ||||||
Sbjct: 6651732 gcaacaatctcgtggatcttgtcactgacttcgggatcatctgacctgacggcaagcttc 6651673

                                                                           
Query: 215     atggccacttctttcggcccgctgattccaaatgatagtctcaccaaaactttcacatta 274
               || |||||||| || |||||||| | |||||| ||||| || || | ||| ||  | |  
Sbjct: 6651672 atcgccacttccttgggcccgctcagtccaaacgatagcctgacaagaaccttggcgtcg 6651613

                                                     
Query: 275     ccgatgagcacacctgaaagcaggcaagtgtgcgatct 312
               ||||||| |||||| || ||||||||||||||||||||
Sbjct: 6651612 ccgatgaacacaccagacagcaggcaagtgtgcgatct 6651575



 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                    
Query: 339     cctcgcaaggctgcatgccaaggatgcttataacagcactcacagcctcagcc 391
               |||| ||||||||||| |||||||| || || |||||||||||||||||||||
Sbjct: 6651423 cctcacaaggctgcataccaaggatactaatgacagcactcacagcctcagcc 6651371
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>gb|AC104473.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1626B05,
             complete sequence
          Length = 127946

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 131/158 (82%)
 Strand = Plus / Minus

                                                                         
Query: 155   gcaacaatttcatggatcctgtcactgacctccggatcatctgatctgacagctagcttc 214
             |||||||| || |||||| |||||||||| || ||||||||||| ||||| || ||||||
Sbjct: 37280 gcaacaatctcgtggatcttgtcactgacttcgggatcatctgacctgacggcaagcttc 37221

                                                                         
Query: 215   atggccacttctttcggcccgctgattccaaatgatagtctcaccaaaactttcacatta 274
             || |||||||| || |||||||| | |||||| ||||| || || | ||| ||  | |  
Sbjct: 37220 atcgccacttccttgggcccgctcagtccaaacgatagcctgacaagaaccttggcgtcg 37161

                                                   
Query: 275   ccgatgagcacacctgaaagcaggcaagtgtgcgatct 312
             ||||||| |||||| || ||||||||||||||||||||
Sbjct: 37160 ccgatgaacacaccagacagcaggcaagtgtgcgatct 37123



 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                  
Query: 339   cctcgcaaggctgcatgccaaggatgcttataacagcactcacagcctcagcc 391
             |||| ||||||||||| |||||||| || || |||||||||||||||||||||
Sbjct: 36971 cctcacaaggctgcataccaaggatactaatgacagcactcacagcctcagcc 36919
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 131/158 (82%)
 Strand = Plus / Minus

                                                                           
Query: 155     gcaacaatttcatggatcctgtcactgacctccggatcatctgatctgacagctagcttc 214
               |||||||| || |||||| |||||||||| || ||||||||||| ||||| || ||||||
Sbjct: 6650945 gcaacaatctcgtggatcttgtcactgacttcgggatcatctgacctgacggcaagcttc 6650886

                                                                           
Query: 215     atggccacttctttcggcccgctgattccaaatgatagtctcaccaaaactttcacatta 274
               || |||||||| || |||||||| | |||||| ||||| || || | ||| ||  | |  
Sbjct: 6650885 atcgccacttccttgggcccgctcagtccaaacgatagcctgacaagaaccttggcgtcg 6650826

                                                     
Query: 275     ccgatgagcacacctgaaagcaggcaagtgtgcgatct 312
               ||||||| |||||| || ||||||||||||||||||||
Sbjct: 6650825 ccgatgaacacaccagacagcaggcaagtgtgcgatct 6650788



 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                    
Query: 339     cctcgcaaggctgcatgccaaggatgcttataacagcactcacagcctcagcc 391
               |||| ||||||||||| |||||||| || || |||||||||||||||||||||
Sbjct: 6650636 cctcacaaggctgcataccaaggatactaatgacagcactcacagcctcagcc 6650584
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>gb|AY111369.1| Zea mays CL858_1 mRNA sequence
          Length = 1437

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 77/92 (83%)
 Strand = Plus / Minus

                                                                        
Query: 158  acaatttcatggatcctgtcactgacctccggatcatctgatctgacagctagcttcatg 217
            ||||| ||||| ||| | |||||||| || || ||||||||||| |||||||  ||||| 
Sbjct: 1194 acaatctcatgaatcttatcactgacttcagggtcatctgatctcacagctaatttcatt 1135

                                            
Query: 218  gccacttctttcggcccgctgattccaaatga 249
            |||||||| || |||||||| | |||||||||
Sbjct: 1134 gccacttcgttgggcccgctcagtccaaatga 1103
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>gb|AY389774.1| Hyacinthus orientalis coatomer protein gamma subunit mRNA, partial
           cds
          Length = 871

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                  
Query: 326 acaacatcggttccctcgcaaggctgcatgccaaggatg 364
           ||||| || ||||||||||||||||||||||||||||||
Sbjct: 736 acaacttcagttccctcgcaaggctgcatgccaaggatg 698
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 94       tggaaagccaaaacaacaaaa 114
                |||||||||||||||||||||
Sbjct: 21750132 tggaaagccaaaacaacaaaa 21750112
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>dbj|AP004665.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0429B05
          Length = 155024

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 94    tggaaagccaaaacaacaaaa 114
             |||||||||||||||||||||
Sbjct: 29715 tggaaagccaaaacaacaaaa 29695
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>dbj|AP004564.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0479C12
          Length = 136799

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 94     tggaaagccaaaacaacaaaa 114
              |||||||||||||||||||||
Sbjct: 117702 tggaaagccaaaacaacaaaa 117682
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>dbj|AP006864.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT18I21, TM1144,
             complete sequence
          Length = 135217

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 103   aaaacaacaaaaaggtcaaccaaaa 127
             |||||||||||||||||||| ||||
Sbjct: 66692 aaaacaacaaaaaggtcaacaaaaa 66716
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>gb|AC129981.9| Mus musculus chromosome 5, clone RP23-114I13, complete sequence
          Length = 198469

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 243    caaatgatagtctcaccaaa 262
              ||||||||||||||||||||
Sbjct: 134144 caaatgatagtctcaccaaa 134163
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>gb|AY544051.1| Salmo salar clone Rsa473 microsatellite sequence
          Length = 1015

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 338 ccctcgcaaggctgcatgcc 357
           ||||||||||||||||||||
Sbjct: 252 ccctcgcaaggctgcatgcc 271
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>gb|AC116324.6| Mus musculus BAC clone RP23-282P1 from 16, complete sequence
          Length = 200774

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 252    gtctcaccaaaactttcaca 271
              ||||||||||||||||||||
Sbjct: 141172 gtctcaccaaaactttcaca 141153
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>gb|AC126722.7| Rattus norvegicus 4 BAC CH230-5L13 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 217690

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 103   aaaacaacaaaaaggtcaac 122
             ||||||||||||||||||||
Sbjct: 30996 aaaacaacaaaaaggtcaac 31015
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>emb|BX321857.1| Nitrosomonas europaea ATCC 19718, complete genome; segment 2/10
          Length = 313050

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 98  aagccaaaacaacaaaaagg 117
           ||||||||||||||||||||
Sbjct: 565 aagccaaaacaacaaaaagg 584
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>emb|BX649413.8| Mouse DNA sequence from clone RP23-193P21 on chromosome 4 Contains the 5'
              end of the Dbccr1 gene for deleted in bladder cancer 1,
              complete sequence
          Length = 186197

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 82     gctttcaccaggtggaaagc 101
              ||||||||||||||||||||
Sbjct: 178406 gctttcaccaggtggaaagc 178425
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>gb|BC091386.1| Rattus norvegicus hypothetical protein LOC310665, mRNA (cDNA clone
           MGC:109471 IMAGE:7321358), complete cds
          Length = 2054

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 370 aacagcactcacagcctcag 389
           ||||||||||||||||||||
Sbjct: 950 aacagcactcacagcctcag 931
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>ref|NM_001025118.1| Rattus norvegicus hypothetical protein LOC310665 (LOC310665), mRNA
          Length = 2054

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 370 aacagcactcacagcctcag 389
           ||||||||||||||||||||
Sbjct: 950 aacagcactcacagcctcag 931
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>gb|DQ067593.1| Cocksfoot streak virus isolate UK-1-04 GHCP619C HC-Pro protein
            (HC-Pro) gene, partial cds
          Length = 1371

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 306  gcgatctcgaattgttttgg 325
            ||||||||||||||||||||
Sbjct: 1110 gcgatctcgaattgttttgg 1091
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>gb|DQ067592.1| Cocksfoot streak virus isolate UK-1-04 GHCP619B HC-Pro protein
            (HC-Pro) gene, partial cds
          Length = 1371

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 306  gcgatctcgaattgttttgg 325
            ||||||||||||||||||||
Sbjct: 1110 gcgatctcgaattgttttgg 1091
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>gb|DQ067591.1| Cocksfoot streak virus isolate UK-1-04 GHCP619A HC-Pro protein
            (HC-Pro) gene, partial cds
          Length = 1371

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 306  gcgatctcgaattgttttgg 325
            ||||||||||||||||||||
Sbjct: 1110 gcgatctcgaattgttttgg 1091
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>dbj|AK031002.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched
           library, clone:5830485N12 product:similar to Protein
           C20orf24 (Rab5-interacting protein) (RIP5) (PNAS-11)
           [Homo sapiens], full insert sequence
          Length = 2005

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 101 ccaaaacaacaaaaaggtca 120
           ||||||||||||||||||||
Sbjct: 906 ccaaaacaacaaaaaggtca 887
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>emb|AL929238.22| Mouse DNA sequence from clone RP23-480I16 on chromosome 2, complete
             sequence
          Length = 174226

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    agaaaaccaacttacacata 49
             ||||||||||||||||||||
Sbjct: 14949 agaaaaccaacttacacata 14968
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>gb|AC068129.6| Homo sapiens BAC clone RP11-619F9 from 2, complete sequence
          Length = 150646

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 105   aacaacaaaaaggtcaacca 124
             ||||||||||||||||||||
Sbjct: 44400 aacaacaaaaaggtcaacca 44419
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>emb|BX005450.9| Zebrafish DNA sequence from clone CH211-150O23, complete sequence
          Length = 164218

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 60     ataattaatcgaaatccctt 79
              ||||||||||||||||||||
Sbjct: 160378 ataattaatcgaaatccctt 160359
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>emb|BX119907.8| Zebrafish DNA sequence from clone CH211-208D14 in linkage group 6,
             complete sequence
          Length = 181060

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 103   aaaacaacaaaaaggtcaac 122
             ||||||||||||||||||||
Sbjct: 24478 aaaacaacaaaaaggtcaac 24459
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>emb|CR854912.18| Zebrafish DNA sequence from clone DKEY-39O12 in linkage group 6,
             complete sequence
          Length = 170067

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 103   aaaacaacaaaaaggtcaac 122
             ||||||||||||||||||||
Sbjct: 11246 aaaacaacaaaaaggtcaac 11265
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>emb|BX914207.15| Zebrafish DNA sequence from clone DKEY-158P11 in linkage group 4,
             complete sequence
          Length = 92140

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 368   ataacagcactcacagcctc 387
             ||||||||||||||||||||
Sbjct: 74498 ataacagcactcacagcctc 74517
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>emb|CT025771.7| Zebrafish DNA sequence from clone DKEY-20I10 in linkage group 13,
             complete sequence
          Length = 190607

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 368   ataacagcactcacagcctc 387
             ||||||||||||||||||||
Sbjct: 25665 ataacagcactcacagcctc 25684
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>emb|AL935150.10| Mouse DNA sequence from clone RP24-482A24 on chromosome 2, complete
             sequence
          Length = 163240

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 101   ccaaaacaacaaaaaggtca 120
             ||||||||||||||||||||
Sbjct: 91724 ccaaaacaacaaaaaggtca 91705


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,951,301
Number of Sequences: 3902068
Number of extensions: 3951301
Number of successful extensions: 77752
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77583
Number of HSP's gapped (non-prelim): 169
length of query: 391
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 369
effective length of database: 17,147,199,772
effective search space: 6327316715868
effective search space used: 6327316715868
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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