>gb|AC132954.4| Mus musculus BAC clone RP24-210F23 from 12, complete sequence
          Length = 160118

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 224   gaaccatttccttttgccttg 244
             |||||||||||||||||||||
Sbjct: 85929 gaaccatttccttttgccttg 85949

>ref|XM_513613.1| PREDICTED: Pan troglodytes similar to KIAA0893 protein (LOC457082),
            mRNA
          Length = 3124

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 275  agctacagatgccactgcac 294
            ||||||||||||||||||||
Sbjct: 2142 agctacagatgccactgcac 2123

>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 131    aggccgtaagccgccaggcc 150
              ||||||||||||||||||||
Sbjct: 119940 aggccgtaagccgccaggcc 119921

>ref|XM_864695.1| PREDICTED: Bos taurus similar to WD-repeat protein 47, transcript
            variant 2 (LOC512354), mRNA
          Length = 4226

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 275  agctacagatgccactgcac 294
            ||||||||||||||||||||
Sbjct: 2680 agctacagatgccactgcac 2661

>ref|XM_589861.2| PREDICTED: Bos taurus similar to WD-repeat protein 47, transcript
            variant 1 (LOC512354), mRNA
          Length = 3883

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 275  agctacagatgccactgcac 294
            ||||||||||||||||||||
Sbjct: 2337 agctacagatgccactgcac 2318

>ref|XM_873788.1| PREDICTED: Bos taurus similar to WD-repeat protein 47, transcript
            variant 3 (LOC512354), mRNA
          Length = 4186

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 275  agctacagatgccactgcac 294
            ||||||||||||||||||||
Sbjct: 2640 agctacagatgccactgcac 2621

>gb|AC121906.3| Mus musculus BAC clone RP24-176E21 from chromosome 3, complete sequence
          Length = 171059

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 218   tctcttgaaccatttccttttgcc 241
             ||||||||||||||||||| ||||
Sbjct: 71165 tctcttgaaccatttccttgtgcc 71142

>ref|NM_014969.3| Homo sapiens WD repeat domain 47 (WDR47), mRNA
          Length = 4259

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 275  agctacagatgccactgcac 294
            ||||||||||||||||||||
Sbjct: 2685 agctacagatgccactgcac 2666

>emb|BX679664.7| Human DNA sequence from clone RP11-20O24 on chromosome 1 Contains the
            TAF13 gene for TAF13 RNA polymerase II TATA box binding
            protein (TBP)-associated factor 18kDa, a RAN member RAS
            oncogene family (RAN) pseudogene, a ribosomal protein S27
            (metallopanstimulin 1) (RPS27) pseudogene, the 5' end of
            a novel gene (KIAA0893) and three CpG islands, complete
            sequence
          Length = 107685

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 275  agctacagatgccactgcac 294
            ||||||||||||||||||||
Sbjct: 3053 agctacagatgccactgcac 3072

>gb|AC133797.2| Homo sapiens 3 BAC RP11-123G15 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 39136

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 231   ttccttttgccttgactatctggctgct 258
             ||||||||||||| | ||||||||||||
Sbjct: 17986 ttccttttgcctttagtatctggctgct 18013

>gb|BC034964.2| Homo sapiens WD repeat domain 47, mRNA (cDNA clone MGC:26714
            IMAGE:4823902), complete cds
          Length = 4259

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 275  agctacagatgccactgcac 294
            ||||||||||||||||||||
Sbjct: 2685 agctacagatgccactgcac 2666

>gb|BC039254.1| Homo sapiens WD repeat domain 47, mRNA (cDNA clone MGC:33742
            IMAGE:5287954), complete cds
          Length = 4181

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 275  agctacagatgccactgcac 294
            ||||||||||||||||||||
Sbjct: 2593 agctacagatgccactgcac 2574

>emb|AL590448.1|CNS07EGF chromosome VIII of strain GB-M1 of Encephalitozoon cuniculi (Microspora)
          Length = 238147

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 25     ctaaaacacttgaccagata 44
              ||||||||||||||||||||
Sbjct: 224012 ctaaaacacttgaccagata 224031

>emb|BX936335.6| Zebrafish DNA sequence from clone CH211-287C12 in linkage group 3,
            complete sequence
          Length = 62086

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 101  taatacgtacaacatgatga 120
            ||||||||||||||||||||
Sbjct: 8861 taatacgtacaacatgatga 8842

>gb|AF454824.1| Enterococcus faecalis pathogenicity island, complete sequence
          Length = 153571

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 374   tctagcaataaagaacaaac 393
             ||||||||||||||||||||
Sbjct: 16379 tctagcaataaagaacaaac 16398

>dbj|AK074616.1| Homo sapiens cDNA FLJ90135 fis, clone HEMBB1000668
          Length = 2375

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 275 agctacagatgccactgcac 294
           ||||||||||||||||||||
Sbjct: 824 agctacagatgccactgcac 805

>gb|AF343839.1|AF343839 Enterococcus faecalis strain OG1X plasmid pAD1 conjugation protein
            gene, complete cds; and unknown gene
          Length = 1892

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 374  tctagcaataaagaacaaac 393
            ||||||||||||||||||||
Sbjct: 1563 tctagcaataaagaacaaac 1582

>ref|NM_031320.1| Rattus norvegicus cadherin EGF LAG seven-pass G-type receptor 3
            (Celsr3), mRNA
          Length = 11868

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 32   acttgaccagatacaagctctaga 55
            |||||||||| |||||||||||||
Sbjct: 4977 acttgaccagctacaagctctaga 4954

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 266      ctctaccgaagctacagatgccactgca 293
                |||||| |||||||||||||||| ||||
Sbjct: 29114499 ctctactgaagctacagatgccagtgca 29114472

>gb|AE002565.1|AE002565 Enterococcus faecalis plasmid pAM373, complete sequence
          Length = 36804

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 374   tctagcaataaagaacaaac 393
             ||||||||||||||||||||
Sbjct: 26979 tctagcaataaagaacaaac 26960

>dbj|AP003245.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0421H07
          Length = 158126

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 266   ctctaccgaagctacagatgccactgca 293
             |||||| |||||||||||||||| ||||
Sbjct: 74865 ctctactgaagctacagatgccagtgca 74838

>emb|BX088525.4| Zebrafish DNA sequence from clone DKEYP-51F8 in linkage group 10,
             complete sequence
          Length = 212133

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 372   actctagcaataaagaacaa 391
             ||||||||||||||||||||
Sbjct: 98991 actctagcaataaagaacaa 99010

>dbj|AB020700.1| Homo sapiens mRNA for KIAA0893 protein, partial cds
          Length = 4195

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 275  agctacagatgccactgcac 294
            ||||||||||||||||||||
Sbjct: 2644 agctacagatgccactgcac 2625

>emb|X96977.1|EFPAD1ORF E.faecalis plasmid pAD1, open reading frames
          Length = 7557

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 374  tctagcaataaagaacaaac 393
            ||||||||||||||||||||
Sbjct: 4279 tctagcaataaagaacaaac 4298

>gb|AF118228.1|AF118228 Mus musculus Ksp-cadherin gene, promoter region and partial cds
          Length = 4884

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 276  gctacagatgccactgcaca 295
            ||||||||||||||||||||
Sbjct: 3421 gctacagatgccactgcaca 3440

>gb|AE016833.1| Enterococcus faecalis V583 plasmid pTEF1, complete sequence
          Length = 66320

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 374   tctagcaataaagaacaaac 393
             ||||||||||||||||||||
Sbjct: 30608 tctagcaataaagaacaaac 30589

>gb|AE016830.1| Enterococcus faecalis V583, complete genome
          Length = 3218031

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 374    tctagcaataaagaacaaac 393
              ||||||||||||||||||||
Sbjct: 458667 tctagcaataaagaacaaac 458686

>gb|AC138617.4| Mus musculus BAC clone RP23-403G9 from 8, complete sequence
          Length = 204919

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 276    gctacagatgccactgcaca 295
              ||||||||||||||||||||
Sbjct: 149203 gctacagatgccactgcaca 149184

>gb|AC135965.2| Homo sapiens chromosome 3 clone RP11-6P8, complete sequence
          Length = 189173

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 231   ttccttttgccttgactatctggctgct 258
             ||||||||||||| | ||||||||||||
Sbjct: 73650 ttccttttgcctttagtatctggctgct 73623

>dbj|AB011528.1| Rattus norvegicus mRNA for MEGF2, complete cds
          Length = 11868

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 32   acttgaccagatacaagctctaga 55
            |||||||||| |||||||||||||
Sbjct: 4977 acttgaccagctacaagctctaga 4954


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,274,747
Number of Sequences: 3902068
Number of extensions: 3274747
Number of successful extensions: 52120
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52050
Number of HSP's gapped (non-prelim): 70
length of query: 444
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 422
effective length of database: 17,147,199,772
effective search space: 7236118303784
effective search space used: 7236118303784
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)