Clone Name | rbastl32h07 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_468783.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3371 Score = 99.6 bits (50), Expect = 7e-18 Identities = 101/118 (85%) Strand = Plus / Minus Query: 275 gacctgacaaattcttcaatgcgcaacttgagatctgtatccggtatcaacatgtcttga 334 ||||||| ||| ||||| |||||| ||||||| |||||||||||||||||||||||||| Sbjct: 3035 gacctgataaactcttcgatgcgcgacttgagctctgtatccggtatcaacatgtcttgc 2976 Query: 335 gtgagctgggagcggttgaatggatcagtgccatcactgagcaaatgccgaacaataa 392 || || || || |||||||| |||||||| | ||||| ||||| |||| |||||||| Sbjct: 2975 gtaaggtgagaacggttgaacggatcagtactgtcacttagcaagtgcctaacaataa 2918
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 89.7 bits (45), Expect = 6e-15 Identities = 78/89 (87%) Strand = Plus / Minus Query: 275 gacctgacaaattcttcaatgcgcaacttgagatctgtatccggtatcaacatgtcttga 334 ||||||| ||| ||||| |||||| ||||||| |||||||||||||||||||||||||| Sbjct: 17703903 gacctgataaactcttcgatgcgcgacttgagctctgtatccggtatcaacatgtcttgc 17703844 Query: 335 gtgagctgggagcggttgaatggatcagt 363 || || || || |||||||| |||||||| Sbjct: 17703843 gtaaggtgagaacggttgaacggatcagt 17703815
>gb|AC133398.4| Oryza sativa chromosome 3 BAC OSJNBa0083F15 genomic sequence, complete sequence Length = 136916 Score = 89.7 bits (45), Expect = 6e-15 Identities = 78/89 (87%) Strand = Plus / Plus Query: 275 gacctgacaaattcttcaatgcgcaacttgagatctgtatccggtatcaacatgtcttga 334 ||||||| ||| ||||| |||||| ||||||| |||||||||||||||||||||||||| Sbjct: 80104 gacctgataaactcttcgatgcgcgacttgagctctgtatccggtatcaacatgtcttgc 80163 Query: 335 gtgagctgggagcggttgaatggatcagt 363 || || || || |||||||| |||||||| Sbjct: 80164 gtaaggtgagaacggttgaacggatcagt 80192
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 89.7 bits (45), Expect = 6e-15 Identities = 78/89 (87%) Strand = Plus / Minus Query: 275 gacctgacaaattcttcaatgcgcaacttgagatctgtatccggtatcaacatgtcttga 334 ||||||| ||| ||||| |||||| ||||||| |||||||||||||||||||||||||| Sbjct: 17697444 gacctgataaactcttcgatgcgcgacttgagctctgtatccggtatcaacatgtcttgc 17697385 Query: 335 gtgagctgggagcggttgaatggatcagt 363 || || || || |||||||| |||||||| Sbjct: 17697384 gtaaggtgagaacggttgaacggatcagt 17697356
>gb|AY109424.1| Zea mays CL2020_2 mRNA sequence Length = 1022 Score = 79.8 bits (40), Expect = 6e-12 Identities = 88/104 (84%) Strand = Plus / Minus Query: 257 cgcttcctcgactgctgggacctgacaaattcttcaatgcgcaacttgagatctgtatcc 316 ||||| ||| |||||||||||| |||||| || || || |||||||||| || || | Sbjct: 732 cgctttctcaactgctgggaccggacaaactcctcgatctgcaacttgagctccgtgttt 673 Query: 317 ggtatcaacatgtcttgagtgagctgggagcggttgaatggatc 360 ||||||| ||||||||||||||| ||||||||||| |||||||| Sbjct: 672 ggtatcagcatgtcttgagtgaggtgggagcggttaaatggatc 629
>gb|AC074375.7| Homo sapiens BAC clone RP11-729M8 from 2, complete sequence Length = 106896 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 173 taatgtccatcccagcttttag 194 |||||||||||||||||||||| Sbjct: 58244 taatgtccatcccagcttttag 58223
>emb|CR931737.1| Medicago truncatula chromosome 5 clone mth2-65j24, COMPLETE SEQUENCE Length = 126498 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2 ttaacacacaccaataataat 22 ||||||||||||||||||||| Sbjct: 66360 ttaacacacaccaataataat 66380
>gb|AC171015.5| Gallus gallus BAC clone CH261-18L11 from chromosome ul, complete sequence Length = 215430 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 212 tcagcagcaccatcaggctcc 232 ||||||||||||||||||||| Sbjct: 128994 tcagcagcaccatcaggctcc 128974
>ref|NM_179622.2| Arabidopsis thaliana 1,3-beta-glucan synthase AT2G13680 mRNA, complete cds Length = 5772 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 catatcagcagcaccatcag 227 |||||||||||||||||||| Sbjct: 4928 catatcagcagcaccatcag 4909
>gb|AY337762.1| Arabidopsis thaliana LAP1 (At2g13680) mRNA, complete cds Length = 5950 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 catatcagcagcaccatcag 227 |||||||||||||||||||| Sbjct: 5081 catatcagcagcaccatcag 5062
>gb|AC146562.17| Medicago truncatula clone mth2-14d10, complete sequence Length = 118505 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 ttaacacacaccaataataa 21 |||||||||||||||||||| Sbjct: 113437 ttaacacacaccaataataa 113418
>emb|AL034351.1|HS879K22 Human DNA sequence from clone RP5-879K22 on chromosome 1q32.1-41 Contains part of the gene for melanoma antigen recognized by T cells 2 protein (MART2), complete sequence Length = 137678 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 caatgcatgacaaaatgtac 112 |||||||||||||||||||| Sbjct: 76072 caatgcatgacaaaatgtac 76053
>gb|AC146331.35| Medicago truncatula clone mth2-7h18, complete sequence Length = 138838 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 ttaacacacaccaataataa 21 |||||||||||||||||||| Sbjct: 8973 ttaacacacaccaataataa 8954
>gb|AC144473.8| Medicago truncatula clone mth2-15l5, complete sequence Length = 128860 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 ttaacacacaccaataataa 21 |||||||||||||||||||| Sbjct: 83089 ttaacacacaccaataataa 83108
>gb|AC007063.6| Arabidopsis thaliana chromosome 2 clone T10F5 map PR1, complete sequence Length = 102585 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 catatcagcagcaccatcag 227 |||||||||||||||||||| Sbjct: 95717 catatcagcagcaccatcag 95698
>gb|AC006436.5| Arabidopsis thaliana chromosome 2 clone F13J11 map mi398, complete sequence Length = 104009 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 catatcagcagcaccatcag 227 |||||||||||||||||||| Sbjct: 13515 catatcagcagcaccatcag 13496
>gb|AC095035.2| Homo sapiens chromosome 1 clone RP11-159J16, complete sequence Length = 173084 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 accatttaccgagaattgat 160 |||||||||||||||||||| Sbjct: 51729 accatttaccgagaattgat 51710
>tpg|BK001470.1| TPA: TPA_exp: Arabidopsis thaliana callose synthase (LAP1) mRNA, complete cds Length = 5772 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 catatcagcagcaccatcag 227 |||||||||||||||||||| Sbjct: 4928 catatcagcagcaccatcag 4909
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 tctccgagtcgacagccctc 256 |||||||||||||||||||| Sbjct: 4703863 tctccgagtcgacagccctc 4703882
>emb|BX679657.5| Mouse DNA sequence from clone RP23-267P2 on chromosome 2, complete sequence Length = 42307 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 tgaacaaaaagatgaaatgt 49 |||||||||||||||||||| Sbjct: 9076 tgaacaaaaagatgaaatgt 9057
>emb|AL845308.11| Mouse DNA sequence from clone RP23-31I2 on chromosome 2, complete sequence Length = 209309 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 tgaacaaaaagatgaaatgt 49 |||||||||||||||||||| Sbjct: 138752 tgaacaaaaagatgaaatgt 138771 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 tgaacaaaaagatgaaatgt 49 |||||||||||||||||||| Sbjct: 62816 tgaacaaaaagatgaaatgt 62797
>emb|AL683892.12| Mouse DNA sequence from clone RP23-440J15 on chromosome X, complete sequence Length = 136809 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 213 cagcagcaccatcaggctcc 232 |||||||||||||||||||| Sbjct: 21295 cagcagcaccatcaggctcc 21276 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,170,322 Number of Sequences: 3902068 Number of extensions: 3170322 Number of successful extensions: 57941 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57858 Number of HSP's gapped (non-prelim): 83 length of query: 392 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 370 effective length of database: 17,147,199,772 effective search space: 6344463915640 effective search space used: 6344463915640 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)