ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl32h05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1R1AB_IBVBC (Q91QT2) Replicase polyprotein 1ab (pp1ab) (ORF1ab po... 28 4.5
2R1AB_IBVB (P27920) Replicase polyprotein 1ab (pp1ab) (ORF1ab pol... 28 4.5
3T2R46_PAPHA (Q646G0) Taste receptor type 2 member 46 (T2R46) 28 5.9
4SUT1_STYHA (P53391) High affinity sulphate transporter 1 27 10.0

>R1AB_IBVBC (Q91QT2) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p87; p195 (EC 3.4.22.-) (Papain-like
            proteinase) (PL-PRO); Peptide HD2 (p41); 3C-like
            proteinase (EC 3.4.22.-) (3CL-
          Length = 6629

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -2

Query: 120  NPTVVAASFLFNAVKQFLVDLEPP 49
            NP +  ASFL  A  Q  VDL+PP
Sbjct: 3719 NPNLKVASFLNEAGNQIYVDLDPP 3742



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>R1AB_IBVB (P27920) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p87; p195 (EC 3.4.22.-) (Papain-like
            proteinase) (PL-PRO); Peptide HD2 (p41); 3C-like
            proteinase (EC 3.4.22.-) (3CL-P
          Length = 6629

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -2

Query: 120  NPTVVAASFLFNAVKQFLVDLEPP 49
            NP +  ASFL  A  Q  VDL+PP
Sbjct: 3719 NPNLKVASFLNEAGNQIYVDLDPP 3742



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>T2R46_PAPHA (Q646G0) Taste receptor type 2 member 46 (T2R46)|
          Length = 309

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -2

Query: 201 LAFHLVKAQGISINYSIWLCVSWFSRWNPTVVAASFL 91
           LAFH V+ +  S  Y++W+  + FS W  T ++  +L
Sbjct: 73  LAFHSVEVR--STAYNVWVVTNHFSNWLSTSLSMFYL 107



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>SUT1_STYHA (P53391) High affinity sulphate transporter 1|
          Length = 667

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -2

Query: 183 KAQGISINYSIWLCVSWFSRWNPTVVAASFL-FNAVKQFLVDLEPPYFLISSLTSIVHAI 7
           K   IS+  S+W  V     W   ++  SFL F  + +++       F +S+++ ++  I
Sbjct: 249 KTDIISVMRSVWTHVHHGWNWETILIGLSFLIFLLITKYIAKKNKKLFWVSAISPMISVI 308

Query: 6   I 4
           +
Sbjct: 309 V 309


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,223,628
Number of Sequences: 219361
Number of extensions: 592626
Number of successful extensions: 1374
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1374
length of database: 80,573,946
effective HSP length: 78
effective length of database: 63,463,788
effective search space used: 1523130912
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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