Clone Name | rbastl32h05 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_477026.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3193 Score = 91.7 bits (46), Expect = 1e-15 Identities = 64/70 (91%) Strand = Plus / Minus Query: 241 tttagccatttgcaacattttcatggatcctgtcactgacctccggatcatctgatctga 300 |||||||||||||||| ||||||||||| ||||||||| ||| |||||||||||||||| Sbjct: 2900 tttagccatttgcaacgatttcatggatcttgtcactgatctcaggatcatctgatctga 2841 Query: 301 cagctagctt 310 | |||||||| Sbjct: 2840 ctgctagctt 2831 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 53 ggttccaaatcaaccaaaaattgtt 77 ||||||||||||| ||||||||||| Sbjct: 3095 ggttccaaatcaatcaaaaattgtt 3071
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 91.7 bits (46), Expect = 1e-15 Identities = 64/70 (91%) Strand = Plus / Minus Query: 241 tttagccatttgcaacattttcatggatcctgtcactgacctccggatcatctgatctga 300 |||||||||||||||| ||||||||||| ||||||||| ||| |||||||||||||||| Sbjct: 5491408 tttagccatttgcaacgatttcatggatcttgtcactgatctcaggatcatctgatctga 5491349 Query: 301 cagctagctt 310 | |||||||| Sbjct: 5491348 ctgctagctt 5491339 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 53 ggttccaaatcaaccaaaaattgtt 77 ||||||||||||| ||||||||||| Sbjct: 5491603 ggttccaaatcaatcaaaaattgtt 5491579
>dbj|AP005171.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0081K20 Length = 117287 Score = 91.7 bits (46), Expect = 1e-15 Identities = 64/70 (91%) Strand = Plus / Minus Query: 241 tttagccatttgcaacattttcatggatcctgtcactgacctccggatcatctgatctga 300 |||||||||||||||| ||||||||||| ||||||||| ||| |||||||||||||||| Sbjct: 4493 tttagccatttgcaacgatttcatggatcttgtcactgatctcaggatcatctgatctga 4434 Query: 301 cagctagctt 310 | |||||||| Sbjct: 4433 ctgctagctt 4424 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 53 ggttccaaatcaaccaaaaattgtt 77 ||||||||||||| ||||||||||| Sbjct: 4688 ggttccaaatcaatcaaaaattgtt 4664
>dbj|AP005259.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0519E02 Length = 139321 Score = 91.7 bits (46), Expect = 1e-15 Identities = 64/70 (91%) Strand = Plus / Minus Query: 241 tttagccatttgcaacattttcatggatcctgtcactgacctccggatcatctgatctga 300 |||||||||||||||| ||||||||||| ||||||||| ||| |||||||||||||||| Sbjct: 125389 tttagccatttgcaacgatttcatggatcttgtcactgatctcaggatcatctgatctga 125330 Query: 301 cagctagctt 310 | |||||||| Sbjct: 125329 ctgctagctt 125320 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 53 ggttccaaatcaaccaaaaattgtt 77 ||||||||||||| ||||||||||| Sbjct: 125584 ggttccaaatcaatcaaaaattgtt 125560
>dbj|AK100095.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004B12, full insert sequence Length = 3193 Score = 91.7 bits (46), Expect = 1e-15 Identities = 64/70 (91%) Strand = Plus / Minus Query: 241 tttagccatttgcaacattttcatggatcctgtcactgacctccggatcatctgatctga 300 |||||||||||||||| ||||||||||| ||||||||| ||| |||||||||||||||| Sbjct: 2900 tttagccatttgcaacgatttcatggatcttgtcactgatctcaggatcatctgatctga 2841 Query: 301 cagctagctt 310 | |||||||| Sbjct: 2840 ctgctagctt 2831 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 53 ggttccaaatcaaccaaaaattgtt 77 ||||||||||||| ||||||||||| Sbjct: 3095 ggttccaaatcaatcaaaaattgtt 3071
>gb|BT017026.1| Zea mays clone EK07D2312G12.c mRNA sequence Length = 1125 Score = 63.9 bits (32), Expect = 3e-07 Identities = 53/60 (88%) Strand = Plus / Minus Query: 239 gttttagccatttgcaacattttcatggatcctgtcactgacctccggatcatctgatct 298 |||||||||||| || ||| |||| |||||||||||||||| ||| |||||||| ||||| Sbjct: 960 gttttagccattagcgacaatttcgtggatcctgtcactgatctctggatcatcagatct 901
>ref|NM_187618.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2481 Score = 46.1 bits (23), Expect = 0.066 Identities = 41/47 (87%) Strand = Plus / Minus Query: 264 tggatcctgtcactgacctccggatcatctgatctgacagctagctt 310 |||||| |||||||||| || ||||||||||| ||||| || ||||| Sbjct: 2459 tggatcttgtcactgacttcgggatcatctgacctgacggcaagctt 2413
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 46.1 bits (23), Expect = 0.066 Identities = 41/47 (87%) Strand = Plus / Minus Query: 264 tggatcctgtcactgacctccggatcatctgatctgacagctagctt 310 |||||| |||||||||| || ||||||||||| ||||| || ||||| Sbjct: 6651720 tggatcttgtcactgacttcgggatcatctgacctgacggcaagctt 6651674
>gb|AC104473.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1626B05, complete sequence Length = 127946 Score = 46.1 bits (23), Expect = 0.066 Identities = 41/47 (87%) Strand = Plus / Minus Query: 264 tggatcctgtcactgacctccggatcatctgatctgacagctagctt 310 |||||| |||||||||| || ||||||||||| ||||| || ||||| Sbjct: 37268 tggatcttgtcactgacttcgggatcatctgacctgacggcaagctt 37222
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 46.1 bits (23), Expect = 0.066 Identities = 41/47 (87%) Strand = Plus / Minus Query: 264 tggatcctgtcactgacctccggatcatctgatctgacagctagctt 310 |||||| |||||||||| || ||||||||||| ||||| || ||||| Sbjct: 6650933 tggatcttgtcactgacttcgggatcatctgacctgacggcaagctt 6650887
>dbj|AK068454.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155G01, full insert sequence Length = 3214 Score = 46.1 bits (23), Expect = 0.066 Identities = 41/47 (87%) Strand = Plus / Minus Query: 264 tggatcctgtcactgacctccggatcatctgatctgacagctagctt 310 |||||| |||||||||| || ||||||||||| ||||| || ||||| Sbjct: 2813 tggatcttgtcactgacttcgggatcatctgacctgacggcaagctt 2767
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 191 tggaaagccaaaacaacaaaa 211 ||||||||||||||||||||| Sbjct: 21750132 tggaaagccaaaacaacaaaa 21750112
>dbj|AP004665.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0429B05 Length = 155024 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 191 tggaaagccaaaacaacaaaa 211 ||||||||||||||||||||| Sbjct: 29715 tggaaagccaaaacaacaaaa 29695
>dbj|AP004564.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0479C12 Length = 136799 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 191 tggaaagccaaaacaacaaaa 211 ||||||||||||||||||||| Sbjct: 117702 tggaaagccaaaacaacaaaa 117682
>gb|AC140272.3| Mus musculus BAC clone RP23-332G6 from 8, complete sequence Length = 228667 Score = 42.1 bits (21), Expect = 1.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 13 atgtactattgaagtcaaggaggatataa 41 |||| |||||||||| ||||||||||||| Sbjct: 142350 atgtgctattgaagtaaaggaggatataa 142378
>dbj|AP006864.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT18I21, TM1144, complete sequence Length = 135217 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 200 aaaacaacaaaaaggtcaaccaaaa 224 |||||||||||||||||||| |||| Sbjct: 66692 aaaacaacaaaaaggtcaacaaaaa 66716
>gb|AC126722.7| Rattus norvegicus 4 BAC CH230-5L13 (Children's Hospital Oakland Research Institute) complete sequence Length = 217690 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 aaaacaacaaaaaggtcaac 219 |||||||||||||||||||| Sbjct: 30996 aaaacaacaaaaaggtcaac 31015
>emb|X64346.1|HSGEND Saimiriine herpesvirus 2 complete genome Length = 112930 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 catttgcaacattttcatgg 266 |||||||||||||||||||| Sbjct: 43987 catttgcaacattttcatgg 43968
>emb|BX321857.1| Nitrosomonas europaea ATCC 19718, complete genome; segment 2/10 Length = 313050 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 aagccaaaacaacaaaaagg 214 |||||||||||||||||||| Sbjct: 565 aagccaaaacaacaaaaagg 584
>emb|AJ410493.1|SHE410493 Saimiriine herpesvirus 2 complete L-DNA sequence, strain C488 Length = 113027 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 catttgcaacattttcatgg 266 |||||||||||||||||||| Sbjct: 43695 catttgcaacattttcatgg 43676
>gb|AC099065.2| Homo sapiens chromosome 1 clone RP11-105I12, complete sequence Length = 181253 Score = 40.1 bits (20), Expect = 4.1 Identities = 32/36 (88%) Strand = Plus / Plus Query: 190 atggaaagccaaaacaacaaaaaggtcaaccaaaaa 225 ||||||||| |||| || |||||||||||| ||||| Sbjct: 156807 atggaaagcaaaaaaaaaaaaaaggtcaactaaaaa 156842
>emb|BX323992.9| Zebrafish DNA sequence from clone DKEY-185B14 in linkage group 12, complete sequence Length = 153572 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 caaatcaaccaaaaattgtt 77 |||||||||||||||||||| Sbjct: 48507 caaatcaaccaaaaattgtt 48488
>gb|AC008829.7| Homo sapiens chromosome 5 clone CTD-2140K22, complete sequence Length = 159145 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 caaccaaaaattgttttact 82 |||||||||||||||||||| Sbjct: 143015 caaccaaaaattgttttact 143034
>dbj|AK031002.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched library, clone:5830485N12 product:similar to Protein C20orf24 (Rab5-interacting protein) (RIP5) (PNAS-11) [Homo sapiens], full insert sequence Length = 2005 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 ccaaaacaacaaaaaggtca 217 |||||||||||||||||||| Sbjct: 906 ccaaaacaacaaaaaggtca 887
>emb|AL929238.22| Mouse DNA sequence from clone RP23-480I16 on chromosome 2, complete sequence Length = 174226 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 agaaaaccaacttacacata 146 |||||||||||||||||||| Sbjct: 14949 agaaaaccaacttacacata 14968
>gb|AC068129.6| Homo sapiens BAC clone RP11-619F9 from 2, complete sequence Length = 150646 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 aacaacaaaaaggtcaacca 221 |||||||||||||||||||| Sbjct: 44400 aacaacaaaaaggtcaacca 44419
>gb|AC016622.5|AC016622 Homo sapiens chromosome 5 clone CTD-2343F18, complete sequence Length = 110085 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 caaccaaaaattgttttact 82 |||||||||||||||||||| Sbjct: 74126 caaccaaaaattgttttact 74107
>gb|AC008833.5|AC008833 Homo sapiens chromosome 5 clone CTD-2146O16, complete sequence Length = 141894 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 caaccaaaaattgttttact 82 |||||||||||||||||||| Sbjct: 98121 caaccaaaaattgttttact 98102
>emb|AL953916.14| Zebrafish DNA sequence from clone CH211-246I7 in linkage group 12, complete sequence Length = 177468 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 caaatcaaccaaaaattgtt 77 |||||||||||||||||||| Sbjct: 107923 caaatcaaccaaaaattgtt 107942
>emb|BX005450.9| Zebrafish DNA sequence from clone CH211-150O23, complete sequence Length = 164218 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 ataattaatcgaaatccctt 176 |||||||||||||||||||| Sbjct: 160378 ataattaatcgaaatccctt 160359
>emb|BX119907.8| Zebrafish DNA sequence from clone CH211-208D14 in linkage group 6, complete sequence Length = 181060 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 aaaacaacaaaaaggtcaac 219 |||||||||||||||||||| Sbjct: 24478 aaaacaacaaaaaggtcaac 24459
>emb|AL806515.7| Mouse DNA sequence from clone RP23-434M18 on chromosome X, complete sequence Length = 125394 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 caagaatgatgctgcaacaa 110 |||||||||||||||||||| Sbjct: 115520 caagaatgatgctgcaacaa 115539
>emb|CR854912.18| Zebrafish DNA sequence from clone DKEY-39O12 in linkage group 6, complete sequence Length = 170067 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 aaaacaacaaaaaggtcaac 219 |||||||||||||||||||| Sbjct: 11246 aaaacaacaaaaaggtcaac 11265
>emb|AL935150.10| Mouse DNA sequence from clone RP24-482A24 on chromosome 2, complete sequence Length = 163240 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 ccaaaacaacaaaaaggtca 217 |||||||||||||||||||| Sbjct: 91724 ccaaaacaacaaaaaggtca 91705
>emb|AL845468.4| Mouse DNA sequence from clone RP23-67E6 on chromosome 2, complete sequence Length = 217609 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 caagaatgatgctgcaacaa 110 |||||||||||||||||||| Sbjct: 48422 caagaatgatgctgcaacaa 48441 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,855,380 Number of Sequences: 3902068 Number of extensions: 3855380 Number of successful extensions: 77567 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 77389 Number of HSP's gapped (non-prelim): 178 length of query: 310 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 288 effective length of database: 17,147,199,772 effective search space: 4938393534336 effective search space used: 4938393534336 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)