ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl32g11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_422927.1| PREDICTED: Gallus gallus similar to minichromos... 36 4.2
2gb|AE017261.1| Picrophilus torridus DSM 9790, complete genome 36 4.2
3ref|XM_455827.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F16621g ... 36 4.2
4emb|AL929044.17| Zebrafish DNA sequence from clone CH211-245D9 i... 36 4.2
5emb|CR769783.10| Zebrafish DNA sequence from clone DKEY-40A23 in... 36 4.2
6emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 36 4.2
7emb|CR385090.8| Zebrafish DNA sequence from clone CH211-245M19 i... 36 4.2
8gb|AF531427.1| Rattus norvegicus FK506 binding protein 4 mRNA, p... 36 4.2
9emb|BX897670.7| Zebrafish DNA sequence from clone DKEY-117L15 in... 36 4.2
10ref|XM_342763.2| PREDICTED: Rattus norvegicus FK506 binding prot... 36 4.2
11emb|CR762427.15| Zebrafish DNA sequence from clone DKEY-253I9 in... 36 4.2

>ref|XM_422927.1| PREDICTED: Gallus gallus similar to minichromosome maintenance
          protein 10 (LOC425136), partial mRNA
          Length = 946

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                            
Query: 22 cctttattacaacatcta 39
          ||||||||||||||||||
Sbjct: 12 cctttattacaacatcta 29



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>gb|AE017261.1| Picrophilus torridus DSM 9790, complete genome
          Length = 1545895

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 19    tgccctttattacaacat 36
             ||||||||||||||||||
Sbjct: 85185 tgccctttattacaacat 85202



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>ref|XM_455827.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F16621g predicted mRNA
          Length = 1686

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 19  tgccctttattacaacat 36
           ||||||||||||||||||
Sbjct: 806 tgccctttattacaacat 823



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>emb|AL929044.17| Zebrafish DNA sequence from clone CH211-245D9 in linkage group 1,
              complete sequence
          Length = 151090

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 22     cctttattacaacatcta 39
              ||||||||||||||||||
Sbjct: 108140 cctttattacaacatcta 108157



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>emb|CR769783.10| Zebrafish DNA sequence from clone DKEY-40A23 in linkage group 1, complete
              sequence
          Length = 222035

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 22     cctttattacaacatcta 39
              ||||||||||||||||||
Sbjct: 207169 cctttattacaacatcta 207152



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>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140
               of Kluyveromyces lactis
          Length = 2602197

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 19      tgccctttattacaacat 36
               ||||||||||||||||||
Sbjct: 1532625 tgccctttattacaacat 1532608



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>emb|CR385090.8| Zebrafish DNA sequence from clone CH211-245M19 in linkage group 5,
             complete sequence
          Length = 140222

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 11    gcatagcctgccctttat 28
             ||||||||||||||||||
Sbjct: 91985 gcatagcctgccctttat 92002



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>gb|AF531427.1| Rattus norvegicus FK506 binding protein 4 mRNA, partial cds
          Length = 1242

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 5    acagaagcatagcctgcc 22
            ||||||||||||||||||
Sbjct: 1198 acagaagcatagcctgcc 1215



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>emb|BX897670.7| Zebrafish DNA sequence from clone DKEY-117L15 in linkage group 8,
             complete sequence
          Length = 107559

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 11    gcatagcctgccctttat 28
             ||||||||||||||||||
Sbjct: 55702 gcatagcctgccctttat 55719



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>ref|XM_342763.2| PREDICTED: Rattus norvegicus FK506 binding protein 4 (Fkbp4), mRNA
          Length = 3384

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 5    acagaagcatagcctgcc 22
            ||||||||||||||||||
Sbjct: 2143 acagaagcatagcctgcc 2160



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>emb|CR762427.15| Zebrafish DNA sequence from clone DKEY-253I9 in linkage group 1,
             complete sequence
          Length = 209003

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 22    cctttattacaacatcta 39
             ||||||||||||||||||
Sbjct: 20462 cctttattacaacatcta 20479


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 281,026
Number of Sequences: 3902068
Number of extensions: 281026
Number of successful extensions: 72781
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72749
Number of HSP's gapped (non-prelim): 32
length of query: 39
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 19
effective length of database: 17,155,003,908
effective search space: 325945074252
effective search space used: 325945074252
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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