ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl32g10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.018
2dbj|AP003846.2| Oryza sativa (japonica cultivar-group) genomic D... 48 0.018
3gb|AC135292.2| Mus musculus BAC clone RP23-153N21 from chromosom... 44 0.29
4gb|AC126940.4| Mus musculus BAC clone RP23-77E4 from chromosome ... 44 0.29
5gb|AC133189.3| Mus musculus BAC clone RP23-354M9 from chromosome... 44 0.29
6gb|AC121807.3| Mus musculus BAC clone RP23-448N11 from chromosom... 44 0.29
7gb|AC114652.7| Mus musculus chromosome 18, clone RP24-156O17, co... 42 1.1
8gb|AC151412.2| Mus musculus BAC clone RP23-229E19 from 7, comple... 42 1.1
9gb|AC120886.2| Oryza sativa (japonica cultivar-group) chromosome... 40 4.5
10ref|XM_449752.1| Candida glabrata CBS138 hypothetical protein (C... 40 4.5
11emb|AL591898.1| Human DNA sequence from clone RP11-409K12 on chr... 40 4.5
12emb|AL109798.19|HSA558P14 Human DNA sequence from clone RP11-558... 40 4.5
13emb|CR380959.1| Candida glabrata strain CBS138 chromosome M comp... 40 4.5
14dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
15dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
16dbj|AP004328.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
17gb|AC121294.13| Mus musculus chromosome 8, clone RP23-187L12, co... 40 4.5
18gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.5
19emb|CT009582.3| Pan troglodytes chromosome X clone PTB-130G16 ma... 40 4.5

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                            
Query: 23       atgttgaatggtagattacatccgcgga 50
                |||||||||||||||||||||| |||||
Sbjct: 24131323 atgttgaatggtagattacatcagcgga 24131350



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>dbj|AP003846.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1710_H11
          Length = 136107

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 23    atgttgaatggtagattacatccgcgga 50
             |||||||||||||||||||||| |||||
Sbjct: 64738 atgttgaatggtagattacatcagcgga 64765



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>gb|AC135292.2| Mus musculus BAC clone RP23-153N21 from chromosome 15, complete
             sequence
          Length = 206967

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 128   cctttctttctttacagtgaccatgc 153
             |||||||| |||||||||||||||||
Sbjct: 23026 cctttcttactttacagtgaccatgc 23051



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>gb|AC126940.4| Mus musculus BAC clone RP23-77E4 from chromosome 19, complete sequence
          Length = 256476

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 115   gtttgctcttactcctttctttcttt 140
             ||||||||||||||| ||||||||||
Sbjct: 93327 gtttgctcttactcccttctttcttt 93302



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>gb|AC133189.3| Mus musculus BAC clone RP23-354M9 from chromosome 15, complete sequence
          Length = 198577

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 128    cctttctttctttacagtgaccatgc 153
              |||||||| |||||||||||||||||
Sbjct: 187896 cctttcttactttacagtgaccatgc 187921



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>gb|AC121807.3| Mus musculus BAC clone RP23-448N11 from chromosome 16, complete sequence
          Length = 178155

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 117    ttgctcttactcctttctttctttac 142
              |||||||||||||||| |||||||||
Sbjct: 121690 ttgctcttactcctttgtttctttac 121715



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>gb|AC114652.7| Mus musculus chromosome 18, clone RP24-156O17, complete sequence
          Length = 148737

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 116   tttgctcttactcctttctttcttt 140
             ||||||||| |||||||||||||||
Sbjct: 39084 tttgctctttctcctttctttcttt 39108



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>gb|AC151412.2| Mus musculus BAC clone RP23-229E19 from 7, complete sequence
          Length = 228343

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 120    ctcttactcctttctttcttt 140
              |||||||||||||||||||||
Sbjct: 104337 ctcttactcctttctttcttt 104317



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>gb|AC120886.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0068E24, complete sequence
          Length = 141492

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 27    tgaatggtagattacatccgcgga 50
             |||||||||||||||||| |||||
Sbjct: 85440 tgaatggtagattacatcagcgga 85417



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>ref|XM_449752.1| Candida glabrata CBS138 hypothetical protein (CAGL0M09383g) partial
            mRNA
          Length = 2946

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 52   acctataggaccatgttgaa 71
            ||||||||||||||||||||
Sbjct: 2374 acctataggaccatgttgaa 2393



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>emb|AL591898.1| Human DNA sequence from clone RP11-409K12 on chromosome 1 Contains the
             5' end of the FH gene for fumarate hydratase, the 5' end
             of the KMO gene for kynurenine 3-monooxygenase (kynurenine
             3-hydroxylase) and a CpG island, complete sequence
          Length = 70011

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 117   ttgctcttactcctttctttcttt 140
             |||||||| |||||||||||||||
Sbjct: 26628 ttgctctttctcctttctttcttt 26651



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>emb|AL109798.19|HSA558P14 Human DNA sequence from clone RP11-558P14 on chromosome Xp21.3-22.13
             Contains the 5' end of the CDKL5 gene for cyclin-dependent
             kinase-like 5 and a CpG island, complete sequence
          Length = 95093

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 116   tttgctcttactcctttctttctt 139
             ||||||||||||| ||||||||||
Sbjct: 73912 tttgctcttactcatttctttctt 73935



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>emb|CR380959.1| Candida glabrata strain CBS138 chromosome M complete sequence
          Length = 1400893

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 52     acctataggaccatgttgaa 71
              ||||||||||||||||||||
Sbjct: 932951 acctataggaccatgttgaa 932932



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 27       tgaatggtagattacatccgcgga 50
                |||||||||||||||||| |||||
Sbjct: 22932933 tgaatggtagattacatcagcgga 22932910



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 27       tgaatggtagattacatccgcgga 50
                ||||||||||||||| ||||||||
Sbjct: 19086375 tgaatggtagattacgtccgcgga 19086352



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>dbj|AP004328.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1616_B03
          Length = 96081

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 27    tgaatggtagattacatccgcgga 50
             ||||||||||||||| ||||||||
Sbjct: 83859 tgaatggtagattacgtccgcgga 83836



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>gb|AC121294.13| Mus musculus chromosome 8, clone RP23-187L12, complete sequence
          Length = 190298

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 121    tcttactcctttctttcttt 140
              ||||||||||||||||||||
Sbjct: 156227 tcttactcctttctttcttt 156246



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 27       tgaatggtagattacatccgcgga 50
                |||||||||||||||||| |||||
Sbjct: 23242843 tgaatggtagattacatcagcgga 23242820



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>emb|CT009582.3| Pan troglodytes chromosome X clone PTB-130G16 map Xq28, complete
             sequence
          Length = 195752

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 116   tttgctcttactcctttctttctt 139
             ||||||||||||| ||||||||||
Sbjct: 72228 tttgctcttactcatttctttctt 72251


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,303,738
Number of Sequences: 3902068
Number of extensions: 4303738
Number of successful extensions: 89900
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89807
Number of HSP's gapped (non-prelim): 93
length of query: 337
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 315
effective length of database: 17,147,199,772
effective search space: 5401367928180
effective search space used: 5401367928180
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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