Clone Name | rbastl32g10 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 48.1 bits (24), Expect = 0.018 Identities = 27/28 (96%) Strand = Plus / Plus Query: 23 atgttgaatggtagattacatccgcgga 50 |||||||||||||||||||||| ||||| Sbjct: 24131323 atgttgaatggtagattacatcagcgga 24131350
>dbj|AP003846.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1710_H11 Length = 136107 Score = 48.1 bits (24), Expect = 0.018 Identities = 27/28 (96%) Strand = Plus / Plus Query: 23 atgttgaatggtagattacatccgcgga 50 |||||||||||||||||||||| ||||| Sbjct: 64738 atgttgaatggtagattacatcagcgga 64765
>gb|AC135292.2| Mus musculus BAC clone RP23-153N21 from chromosome 15, complete sequence Length = 206967 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Plus Query: 128 cctttctttctttacagtgaccatgc 153 |||||||| ||||||||||||||||| Sbjct: 23026 cctttcttactttacagtgaccatgc 23051
>gb|AC126940.4| Mus musculus BAC clone RP23-77E4 from chromosome 19, complete sequence Length = 256476 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Minus Query: 115 gtttgctcttactcctttctttcttt 140 ||||||||||||||| |||||||||| Sbjct: 93327 gtttgctcttactcccttctttcttt 93302
>gb|AC133189.3| Mus musculus BAC clone RP23-354M9 from chromosome 15, complete sequence Length = 198577 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Plus Query: 128 cctttctttctttacagtgaccatgc 153 |||||||| ||||||||||||||||| Sbjct: 187896 cctttcttactttacagtgaccatgc 187921
>gb|AC121807.3| Mus musculus BAC clone RP23-448N11 from chromosome 16, complete sequence Length = 178155 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Plus Query: 117 ttgctcttactcctttctttctttac 142 |||||||||||||||| ||||||||| Sbjct: 121690 ttgctcttactcctttgtttctttac 121715
>gb|AC114652.7| Mus musculus chromosome 18, clone RP24-156O17, complete sequence Length = 148737 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 116 tttgctcttactcctttctttcttt 140 ||||||||| ||||||||||||||| Sbjct: 39084 tttgctctttctcctttctttcttt 39108
>gb|AC151412.2| Mus musculus BAC clone RP23-229E19 from 7, complete sequence Length = 228343 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 120 ctcttactcctttctttcttt 140 ||||||||||||||||||||| Sbjct: 104337 ctcttactcctttctttcttt 104317
>gb|AC120886.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0068E24, complete sequence Length = 141492 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 27 tgaatggtagattacatccgcgga 50 |||||||||||||||||| ||||| Sbjct: 85440 tgaatggtagattacatcagcgga 85417
>ref|XM_449752.1| Candida glabrata CBS138 hypothetical protein (CAGL0M09383g) partial mRNA Length = 2946 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 acctataggaccatgttgaa 71 |||||||||||||||||||| Sbjct: 2374 acctataggaccatgttgaa 2393
>emb|AL591898.1| Human DNA sequence from clone RP11-409K12 on chromosome 1 Contains the 5' end of the FH gene for fumarate hydratase, the 5' end of the KMO gene for kynurenine 3-monooxygenase (kynurenine 3-hydroxylase) and a CpG island, complete sequence Length = 70011 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 117 ttgctcttactcctttctttcttt 140 |||||||| ||||||||||||||| Sbjct: 26628 ttgctctttctcctttctttcttt 26651
>emb|AL109798.19|HSA558P14 Human DNA sequence from clone RP11-558P14 on chromosome Xp21.3-22.13 Contains the 5' end of the CDKL5 gene for cyclin-dependent kinase-like 5 and a CpG island, complete sequence Length = 95093 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 116 tttgctcttactcctttctttctt 139 ||||||||||||| |||||||||| Sbjct: 73912 tttgctcttactcatttctttctt 73935
>emb|CR380959.1| Candida glabrata strain CBS138 chromosome M complete sequence Length = 1400893 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 acctataggaccatgttgaa 71 |||||||||||||||||||| Sbjct: 932951 acctataggaccatgttgaa 932932
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 27 tgaatggtagattacatccgcgga 50 |||||||||||||||||| ||||| Sbjct: 22932933 tgaatggtagattacatcagcgga 22932910
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 27 tgaatggtagattacatccgcgga 50 ||||||||||||||| |||||||| Sbjct: 19086375 tgaatggtagattacgtccgcgga 19086352
>dbj|AP004328.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1616_B03 Length = 96081 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 27 tgaatggtagattacatccgcgga 50 ||||||||||||||| |||||||| Sbjct: 83859 tgaatggtagattacgtccgcgga 83836
>gb|AC121294.13| Mus musculus chromosome 8, clone RP23-187L12, complete sequence Length = 190298 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 tcttactcctttctttcttt 140 |||||||||||||||||||| Sbjct: 156227 tcttactcctttctttcttt 156246
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 27 tgaatggtagattacatccgcgga 50 |||||||||||||||||| ||||| Sbjct: 23242843 tgaatggtagattacatcagcgga 23242820
>emb|CT009582.3| Pan troglodytes chromosome X clone PTB-130G16 map Xq28, complete sequence Length = 195752 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 116 tttgctcttactcctttctttctt 139 ||||||||||||| |||||||||| Sbjct: 72228 tttgctcttactcatttctttctt 72251 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,303,738 Number of Sequences: 3902068 Number of extensions: 4303738 Number of successful extensions: 89900 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 89807 Number of HSP's gapped (non-prelim): 93 length of query: 337 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 315 effective length of database: 17,147,199,772 effective search space: 5401367928180 effective search space used: 5401367928180 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)