ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl32g08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_465026.1| Oryza sativa (japonica cultivar-group), mRNA 157 4e-35
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 157 4e-35
3dbj|AP004212.3| Oryza sativa (japonica cultivar-group) genomic D... 157 4e-35
4dbj|AP004168.3| Oryza sativa (japonica cultivar-group) genomic D... 157 4e-35
5dbj|AK100736.1| Oryza sativa (japonica cultivar-group) cDNA clon... 157 4e-35
6dbj|AK060335.1| Oryza sativa (japonica cultivar-group) cDNA clon... 157 4e-35
7gb|BT017285.1| Zea mays clone EL01N0314F10.c mRNA sequence 131 2e-27
8gb|AY108871.1| Zea mays PCO064771 mRNA sequence 131 2e-27
9ref|NM_122332.2| Arabidopsis thaliana dipeptidyl-peptidase IV/ s... 50 0.006
10gb|BT010390.1| Arabidopsis thaliana At5g24260 mRNA, complete cds 50 0.006
11gb|BT008638.1| Arabidopsis thaliana clone RAFL09-93-L17 (R19979)... 50 0.006
12gb|BT002461.1| Arabidopsis thaliana dipeptidyl peptidase IV-like... 50 0.006
13dbj|AB006701.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 50 0.006
14dbj|AP004895.1| Lotus japonicus genomic DNA, chromosome 4, clone... 44 0.37
15gb|AC137993.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
16gb|AC083751.6| Genomic sequence for Oryza sativa, Nipponbare str... 42 1.5
17dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
18emb|BX571820.5| Zebrafish DNA sequence from clone DKEY-14G9 in l... 42 1.5
19gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
20gb|AC146201.2| Pan troglodytes BAC clone RP43-34J1 from 7, compl... 40 5.8
21gb|AC148826.4| Pan troglodytes BAC clone CH251-484F13 from chrom... 40 5.8
22gb|AC004534.1|AC004534 Homo sapiens PAC clone RP4-545C24 from 7q... 40 5.8 
>ref|XM_465026.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2169

 Score =  157 bits (79), Expect = 4e-35
 Identities = 145/167 (86%)
 Strand = Plus / Minus

                                                                        
Query: 255  ctctccacaaaatcccagatcctctcctccatatagatccggtcgtctagctgacgtggc 314
            ||||| |||||||||||||||||||| |||||||||||||||||  ||| | | || |||
Sbjct: 2024 ctctctacaaaatcccagatcctctcttccatatagatccggtcccctaaccggcgcggc 1965

                                                                        
Query: 315  atgtgcctctcatcagggaagaggaggatctcgtacgacttgcgttccgccatcaaactg 374
            ||||||||||| || |||||||||||||| ||||| | ||| |  ||||||||||    |
Sbjct: 1964 atgtgcctctcgtcggggaagaggaggatatcgtagggcttcccctccgccatcagcgag 1905

                                                           
Query: 375  ttgatgagcctagccgtgtgcctgaaatgcacgttctcgtcaatcat 421
            ||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 1904 ttgatgagcctcgccgtgtgcctgaaatgcacgttctcgtctatcat 1858
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  157 bits (79), Expect = 4e-35
 Identities = 145/167 (86%)
 Strand = Plus / Plus

                                                                            
Query: 255      ctctccacaaaatcccagatcctctcctccatatagatccggtcgtctagctgacgtggc 314
                ||||| |||||||||||||||||||| |||||||||||||||||  ||| | | || |||
Sbjct: 10999213 ctctctacaaaatcccagatcctctcttccatatagatccggtcccctaaccggcgcggc 10999272

                                                                            
Query: 315      atgtgcctctcatcagggaagaggaggatctcgtacgacttgcgttccgccatcaaactg 374
                ||||||||||| || |||||||||||||| ||||| | ||| |  ||||||||||    |
Sbjct: 10999273 atgtgcctctcgtcggggaagaggaggatatcgtagggcttcccctccgccatcagcgag 10999332

                                                               
Query: 375      ttgatgagcctagccgtgtgcctgaaatgcacgttctcgtcaatcat 421
                ||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 10999333 ttgatgagcctcgccgtgtgcctgaaatgcacgttctcgtctatcat 10999379
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>dbj|AP004212.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1086_G08
          Length = 59883

 Score =  157 bits (79), Expect = 4e-35
 Identities = 145/167 (86%)
 Strand = Plus / Plus

                                                                         
Query: 255   ctctccacaaaatcccagatcctctcctccatatagatccggtcgtctagctgacgtggc 314
             ||||| |||||||||||||||||||| |||||||||||||||||  ||| | | || |||
Sbjct: 25876 ctctctacaaaatcccagatcctctcttccatatagatccggtcccctaaccggcgcggc 25935

                                                                         
Query: 315   atgtgcctctcatcagggaagaggaggatctcgtacgacttgcgttccgccatcaaactg 374
             ||||||||||| || |||||||||||||| ||||| | ||| |  ||||||||||    |
Sbjct: 25936 atgtgcctctcgtcggggaagaggaggatatcgtagggcttcccctccgccatcagcgag 25995

                                                            
Query: 375   ttgatgagcctagccgtgtgcctgaaatgcacgttctcgtcaatcat 421
             ||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 25996 ttgatgagcctcgccgtgtgcctgaaatgcacgttctcgtctatcat 26042
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>dbj|AP004168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1756_H07
          Length = 217205

 Score =  157 bits (79), Expect = 4e-35
 Identities = 145/167 (86%)
 Strand = Plus / Plus

                                                                          
Query: 255    ctctccacaaaatcccagatcctctcctccatatagatccggtcgtctagctgacgtggc 314
              ||||| |||||||||||||||||||| |||||||||||||||||  ||| | | || |||
Sbjct: 205412 ctctctacaaaatcccagatcctctcttccatatagatccggtcccctaaccggcgcggc 205471

                                                                          
Query: 315    atgtgcctctcatcagggaagaggaggatctcgtacgacttgcgttccgccatcaaactg 374
              ||||||||||| || |||||||||||||| ||||| | ||| |  ||||||||||    |
Sbjct: 205472 atgtgcctctcgtcggggaagaggaggatatcgtagggcttcccctccgccatcagcgag 205531

                                                             
Query: 375    ttgatgagcctagccgtgtgcctgaaatgcacgttctcgtcaatcat 421
              ||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 205532 ttgatgagcctcgccgtgtgcctgaaatgcacgttctcgtctatcat 205578
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>dbj|AK100736.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023118B01, full
            insert sequence
          Length = 2169

 Score =  157 bits (79), Expect = 4e-35
 Identities = 145/167 (86%)
 Strand = Plus / Minus

                                                                        
Query: 255  ctctccacaaaatcccagatcctctcctccatatagatccggtcgtctagctgacgtggc 314
            ||||| |||||||||||||||||||| |||||||||||||||||  ||| | | || |||
Sbjct: 2024 ctctctacaaaatcccagatcctctcttccatatagatccggtcccctaaccggcgcggc 1965

                                                                        
Query: 315  atgtgcctctcatcagggaagaggaggatctcgtacgacttgcgttccgccatcaaactg 374
            ||||||||||| || |||||||||||||| ||||| | ||| |  ||||||||||    |
Sbjct: 1964 atgtgcctctcgtcggggaagaggaggatatcgtagggcttcccctccgccatcagcgag 1905

                                                           
Query: 375  ttgatgagcctagccgtgtgcctgaaatgcacgttctcgtcaatcat 421
            ||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 1904 ttgatgagcctcgccgtgtgcctgaaatgcacgttctcgtctatcat 1858
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>dbj|AK060335.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-008-C02, full
            insert sequence
          Length = 1603

 Score =  157 bits (79), Expect = 4e-35
 Identities = 145/167 (86%)
 Strand = Plus / Minus

                                                                        
Query: 255  ctctccacaaaatcccagatcctctcctccatatagatccggtcgtctagctgacgtggc 314
            ||||| |||||||||||||||||||| |||||||||||||||||  ||| | | || |||
Sbjct: 1377 ctctctacaaaatcccagatcctctcttccatatagatccggtcccctaaccggcgcggc 1318

                                                                        
Query: 315  atgtgcctctcatcagggaagaggaggatctcgtacgacttgcgttccgccatcaaactg 374
            ||||||||||| || |||||||||||||| ||||| | ||| |  ||||||||||    |
Sbjct: 1317 atgtgcctctcgtcggggaagaggaggatatcgtagggcttcccctccgccatcagcgag 1258

                                                           
Query: 375  ttgatgagcctagccgtgtgcctgaaatgcacgttctcgtcaatcat 421
            ||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 1257 ttgatgagcctcgccgtgtgcctgaaatgcacgttctcgtctatcat 1211
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>gb|BT017285.1| Zea mays clone EL01N0314F10.c mRNA sequence
          Length = 1256

 Score =  131 bits (66), Expect = 2e-27
 Identities = 135/158 (85%)
 Strand = Plus / Minus

                                                                        
Query: 271  agatcctctcctccatatagatccggtcgtctagctgacgtggcatgtgcctctcatcag 330
            |||||||||||||||| |||||||| ||  | ||  | ||||||||||||||||| ||||
Sbjct: 1098 agatcctctcctccatgtagatccgatcaccaaggcgtcgtggcatgtgcctctcgtcag 1039

                                                                        
Query: 331  ggaagaggaggatctcgtacgacttgcgttccgccatcaaactgttgatgagcctagccg 390
            |||| |||||||| || || | |||||  || ||||| |    |||||||||||| ||||
Sbjct: 1038 ggaaaaggaggatttcatagggcttgccctctgccattagcgagttgatgagccttgccg 979

                                                  
Query: 391  tgtgcctgaaatgcacgttctcgtcaatcatcccatgg 428
            ||||||||||||||||||||||||||||||||||||||
Sbjct: 978  tgtgcctgaaatgcacgttctcgtcaatcatcccatgg 941
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>gb|AY108871.1| Zea mays PCO064771 mRNA sequence
          Length = 1671

 Score =  131 bits (66), Expect = 2e-27
 Identities = 135/158 (85%)
 Strand = Plus / Minus

                                                                        
Query: 271  agatcctctcctccatatagatccggtcgtctagctgacgtggcatgtgcctctcatcag 330
            |||||||||||||||| |||||||| ||  | ||  | ||||||||||||||||| ||||
Sbjct: 1428 agatcctctcctccatgtagatccgatcaccaaggcgtcgtggcatgtgcctctcgtcag 1369

                                                                        
Query: 331  ggaagaggaggatctcgtacgacttgcgttccgccatcaaactgttgatgagcctagccg 390
            |||| |||||||| || || | |||||  || ||||| |    |||||||||||| ||||
Sbjct: 1368 ggaaaaggaggatttcatagggcttgccctctgccattagcgagttgatgagccttgccg 1309

                                                  
Query: 391  tgtgcctgaaatgcacgttctcgtcaatcatcccatgg 428
            ||||||||||||||||||||||||||||||||||||||
Sbjct: 1308 tgtgcctgaaatgcacgttctcgtcaatcatcccatgg 1271
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>ref|NM_122332.2| Arabidopsis thaliana dipeptidyl-peptidase IV/ serine-type peptidase
            AT5G24260 mRNA, complete cds
          Length = 2513

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 381  agcctagccgtgtgcctgaaatgcacgttctcgtcaatcat 421
            |||||||||||||| ||||||||||| ||||| || |||||
Sbjct: 2235 agcctagccgtgtgtctgaaatgcacattctcatcgatcat 2195
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>gb|BT010390.1| Arabidopsis thaliana At5g24260 mRNA, complete cds
          Length = 1659

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 381  agcctagccgtgtgcctgaaatgcacgttctcgtcaatcat 421
            |||||||||||||| ||||||||||| ||||| || |||||
Sbjct: 1523 agcctagccgtgtgtctgaaatgcacattctcatcgatcat 1483
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>gb|BT008638.1| Arabidopsis thaliana clone RAFL09-93-L17 (R19979) putative dipeptidyl
            peptidase IV (At5g24260) mRNA, complete cds
          Length = 2530

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 381  agcctagccgtgtgcctgaaatgcacgttctcgtcaatcat 421
            |||||||||||||| ||||||||||| ||||| || |||||
Sbjct: 2235 agcctagccgtgtgtctgaaatgcacattctcatcgatcat 2195
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>gb|BT002461.1| Arabidopsis thaliana dipeptidyl peptidase IV-like protein (At5g24260)
            mRNA, complete cds
          Length = 2873

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 381  agcctagccgtgtgcctgaaatgcacgttctcgtcaatcat 421
            |||||||||||||| ||||||||||| ||||| || |||||
Sbjct: 2648 agcctagccgtgtgtctgaaatgcacattctcatcgatcat 2608
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>dbj|AB006701.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MOP9
          Length = 84194

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                      
Query: 381   agcctagccgtgtgcctgaaatgcacgttctcgtcaatcat 421
             |||||||||||||| ||||||||||| ||||| || |||||
Sbjct: 22565 agcctagccgtgtgtctgaaatgcacattctcatcgatcat 22605
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>dbj|AP004895.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT02D01, TM0039,
             complete sequence
          Length = 91268

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                   
Query: 390   gtgtgcctgaaatgcacgttctcgtcaatcatcccatg 427
             |||||||||||||| || ||||| |||||||| |||||
Sbjct: 51363 gtgtgcctgaaatgtacattctcatcaatcatgccatg 51400
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>gb|AC137993.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0122P24, complete sequence
          Length = 136104

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 47    acatgaaaaaattggattatt 67
             |||||||||||||||||||||
Sbjct: 75011 acatgaaaaaattggattatt 74991
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>gb|AC083751.6| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0042K08, from chromosome 2, complete sequence
          Length = 164628

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 47    acatgaaaaaattggattatt 67
             |||||||||||||||||||||
Sbjct: 43691 acatgaaaaaattggattatt 43671
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 47      acatgaaaaaattggattatt 67
               |||||||||||||||||||||
Sbjct: 7395787 acatgaaaaaattggattatt 7395807
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>emb|BX571820.5| Zebrafish DNA sequence from clone DKEY-14G9 in linkage group 19,
             complete sequence
          Length = 148354

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 26    tggtagtgaagttccagcatc 46
             |||||||||||||||||||||
Sbjct: 79633 tggtagtgaagttccagcatc 79653
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 47      acatgaaaaaattggattatt 67
               |||||||||||||||||||||
Sbjct: 7465873 acatgaaaaaattggattatt 7465893
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>gb|AC146201.2| Pan troglodytes BAC clone RP43-34J1 from 7, complete sequence
          Length = 169640

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 37    ttccagcatcacatgaaaaaattg 60
             ||||||||||||||||| ||||||
Sbjct: 11223 ttccagcatcacatgaacaaattg 11246
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>gb|AC148826.4| Pan troglodytes BAC clone CH251-484F13 from chromosome 7, complete
             sequence
          Length = 184163

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 37    ttccagcatcacatgaaaaaattg 60
             ||||||||||||||||| ||||||
Sbjct: 13388 ttccagcatcacatgaacaaattg 13365
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>gb|AC004534.1|AC004534 Homo sapiens PAC clone RP4-545C24 from 7q21-q22, complete sequence
          Length = 155952

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 37     ttccagcatcacatgaaaaaattg 60
              ||||||||||||||||| ||||||
Sbjct: 137794 ttccagcatcacatgaacaaattg 137817


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,776,560
Number of Sequences: 3902068
Number of extensions: 3776560
Number of successful extensions: 60560
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60468
Number of HSP's gapped (non-prelim): 84
length of query: 430
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 408
effective length of database: 17,147,199,772
effective search space: 6996057506976
effective search space used: 6996057506976
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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