ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl32g03 |
|---|---|
| Clone Library Name | barley_pub |
>ATG1_CANGA (Q6FL58) Serine/threonine-protein kinase ATG1 (EC 2.7.11.1)| (Autophagy-related protein 1) Length = 942 Score = 32.0 bits (71), Expect = 0.61 Identities = 18/50 (36%), Positives = 26/50 (52%) Frame = -3 Query: 397 FRRYALATSVTFMLSTM*LFMQSEWLCFESYNLSAPRWFPLVGILFEHCC 248 F R+ +TS+ L L+M E L ++ YN A W + +LFE CC Sbjct: 201 FARFLPSTSLAETLCGSPLYMAPEILNYQKYNAKADLW-SVGTVLFEMCC 249
>NEF_HV2D2 (P15829) Nef protein (Negative factor) (F-protein) (3'ORF)| Length = 239 Score = 30.4 bits (67), Expect = 1.8 Identities = 16/26 (61%), Positives = 17/26 (65%), Gaps = 1/26 (3%) Frame = -3 Query: 178 PPQLKS-KSIGGSTLIWQFTSDLAYD 104 P Q+ S I G TLIWQF S LAYD Sbjct: 180 PAQISSWDDIHGETLIWQFDSLLAYD 205
>ATG1_KLULA (Q6CSX2) Serine/threonine-protein kinase ATG1 (EC 2.7.11.1)| (Autophagy-related protein 1) Length = 831 Score = 29.6 bits (65), Expect = 3.0 Identities = 17/50 (34%), Positives = 25/50 (50%) Frame = -3 Query: 397 FRRYALATSVTFMLSTM*LFMQSEWLCFESYNLSAPRWFPLVGILFEHCC 248 F R+ TS+ L L+M E L ++ YN A W + +L+E CC Sbjct: 210 FARFLPNTSLAETLCGSPLYMAPEILNYQKYNAKADLW-SVGTVLYEMCC 258
>GPC5D_HUMAN (Q9NZD1) G-protein coupled receptor family C group 5 member D| Length = 345 Score = 29.6 bits (65), Expect = 3.0 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Frame = -3 Query: 382 LATSVTFMLSTM*LFMQSEWLCFESYNLSAPRWFPLVGILFEHC--CLLLSSRIVVYFSR 209 L T + F+LS + LF + E +AP + L G+LF C CLL + +V R Sbjct: 60 LPTQLLFLLSVLGLFGLAFAFIIELNQQTAPVRYFLFGVLFALCFSCLLAHASNLVKLVR 119 Query: 208 GTI 200 G + Sbjct: 120 GCV 122
>ATG1_YEAST (P53104) Serine/threonine-protein kinase ATG1 (EC 2.7.11.1)| (Autophagy-related protein 1) (Autophagy protein 3) (Cytoplasm to vacuole targeting protein 10) Length = 897 Score = 29.6 bits (65), Expect = 3.0 Identities = 17/50 (34%), Positives = 25/50 (50%) Frame = -3 Query: 397 FRRYALATSVTFMLSTM*LFMQSEWLCFESYNLSAPRWFPLVGILFEHCC 248 F R+ TS+ L L+M E L ++ YN A W + ++FE CC Sbjct: 214 FARFLPNTSLAETLCGSPLYMAPEILNYQKYNAKADLW-SVGTVVFEMCC 262
>ATG1_ASHGO (Q75CH3) Serine/threonine-protein kinase ATG1 (EC 2.7.11.1)| (Autophagy-related protein 1) Length = 972 Score = 29.6 bits (65), Expect = 3.0 Identities = 17/50 (34%), Positives = 25/50 (50%) Frame = -3 Query: 397 FRRYALATSVTFMLSTM*LFMQSEWLCFESYNLSAPRWFPLVGILFEHCC 248 F R+ TS+ L L+M E L ++ YN A W + +L+E CC Sbjct: 208 FARFLPNTSLAETLCGSPLYMAPEILNYQKYNAKADLW-SVGTVLYEMCC 256
>METE_LISMF (Q71YY6) 5-methyltetrahydropteroyltriglutamate--homocysteine| methyltransferase (EC 2.1.1.14) (Methionine synthase, vitamin-B12 independent isozyme) (Cobalamin-independent methionine synthase) Length = 765 Score = 28.5 bits (62), Expect = 6.7 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 13/87 (14%) Frame = -2 Query: 344 TVHAK*MVMFRVVQSVSAPLVSFSWNFIRALLFASLVKNCCLLLSWYHLTSTGRNAAPT- 168 +V+A+ + V ++AP+ +W+F+R + S+V N L + + RN Sbjct: 543 SVYAQSLTKRPVKGMLTAPVTIINWSFVRDDVPESVVANQVGLALRKEVEALERNGIKVI 602 Query: 167 ------------QKQVNWRKYFDMAVH 123 KQ W+KY D AV+ Sbjct: 603 QVDEPALREGLPLKQARWQKYLDDAVY 629
>METE_LISIN (Q92AX9) 5-methyltetrahydropteroyltriglutamate--homocysteine| methyltransferase (EC 2.1.1.14) (Methionine synthase, vitamin-B12 independent isozyme) (Cobalamin-independent methionine synthase) Length = 765 Score = 28.5 bits (62), Expect = 6.7 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 13/87 (14%) Frame = -2 Query: 344 TVHAK*MVMFRVVQSVSAPLVSFSWNFIRALLFASLVKNCCLLLSWYHLTSTGRNAAPT- 168 +V+A+ + V ++AP+ +W+F+R + S+V N L + + RN Sbjct: 543 SVYAQSLTKRPVKGMLTAPVTIINWSFVRDDVPESVVANQVGLALRKEVEALERNGIKVI 602 Query: 167 ------------QKQVNWRKYFDMAVH 123 KQ W+KY D AV+ Sbjct: 603 QVDEPALREGLPLKQARWQKYLDDAVY 629
>PDAT_YEAST (P40345) Phospholipid:diacylglycerol acyltransferase (EC 2.3.1.158)| (PDAT) Length = 661 Score = 28.5 bits (62), Expect = 6.7 Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 2/88 (2%) Frame = +3 Query: 153 IDLLLSWGGIPSCASQMVPREK*TTILDERSKQQ--CSNKIPTKGNQRGADRLYDSKHNH 326 + +L +WGGIPS M+P+ + D +S + +N T GN +R N Sbjct: 405 VKMLQTWGGIPS----MLPKGEEVIWGDMKSSSEDALNNNTDTYGNFIRFERNTSDAFNK 460 Query: 327 SLCMNSHMVLSINVTEVANA*RLNQQSS 410 +L M + ++++++ R+++Q S Sbjct: 461 NLTMKDAINMTLSISPEWLQRRVHEQYS 488
>BRNQ_CORGL (O06754) Branched-chain amino acid transport system carrier protein| (Branched-chain amino acid uptake carrier) Length = 426 Score = 28.5 bits (62), Expect = 6.7 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 7/59 (11%) Frame = -2 Query: 353 YHVTVHAK*MVMFRV-------VQSVSAPLVSFSWNFIRALLFASLVKNCCLLLSWYHL 198 YHV ++ F V V +V+AP++SF + L+F SL++ L W +L Sbjct: 302 YHVWATVFALISFGVATMGLDTVLAVAAPVISFIYPSAITLVFLSLIEPLLFRLKWTYL 360
>ENH5_HUMAN (P61549) HERV-H_19p13.11 provirus ancestral Env polyprotein| precursor (Envelope polyprotein) (Env protein RGH1) (Env protein RTLV-H) [Includes: Surface protein (SU)] Length = 369 Score = 28.1 bits (61), Expect = 8.8 Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 6/73 (8%) Frame = -2 Query: 290 PLVSF---SWNFIRALLFAS---LVKNCCLLLSWYHLTSTGRNAAPTQKQVNWRKYFDMA 129 PL S+ S N +LL AS L NCCL +S L+S+ A PT Q +W ++ Sbjct: 23 PLPSYLHHSINLTHSLLAASNPSLANNCCLCIS---LSSSAYTAVPT-LQTDWATP-PVS 77 Query: 128 VHVRFSLRYLKRY 90 +H+R S + Y Sbjct: 78 LHLRTSFNSPQLY 90
>T2R43_HUMAN (P59537) Taste receptor type 2 member 43 (T2R43) (T2R52)| Length = 309 Score = 28.1 bits (61), Expect = 8.8 Identities = 27/100 (27%), Positives = 43/100 (43%) Frame = -2 Query: 410 TALLVQTLCIGNFSYVYA*YHVTVHAK*MVMFRVVQSVSAPLVSFSWNFIRALLFASLVK 231 ++L+V T IGNF+ + + + ++S +SF+ + AL + + Sbjct: 10 SSLVVVTFVIGNFANGF-----------IALVNSIESFKRQKISFADQILTALAVSRVGL 58 Query: 230 NCCLLLSWYHLTSTGRNAAPTQKQVNWRKYFDMAVHVRFS 111 LLL+WY ST N A +V Y AV FS Sbjct: 59 LWVLLLNWY---STVLNPAFNSVEVRTTAYNIWAVINHFS 95
>NU5M_CERCA (Q34052) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH| dehydrogenase subunit 5) (Fragment) Length = 80 Score = 28.1 bits (61), Expect = 8.8 Identities = 17/55 (30%), Positives = 31/55 (56%) Frame = -3 Query: 373 SVTFMLSTM*LFMQSEWLCFESYNLSAPRWFPLVGILFEHCCLLLSSRIVVYFSR 209 S+ FML+ +F++ E + S + F + +LF LL+SS +V+Y+S+ Sbjct: 20 SLNFMLNEYCVFLEWEVVSLNSSGIVMTFLFDWMSLLFMSFVLLISS-LVIYYSK 73 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,775,663 Number of Sequences: 219361 Number of extensions: 1122385 Number of successful extensions: 2415 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2372 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2413 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2278320915 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
