ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl32g03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT009037.1| Triticum aestivum clone wdk5c.pk0001.d10:fis, ful... 178 1e-41
2gb|AC164556.2| Mus musculus BAC clone RP23-334L9 from chromosome... 42 1.4
3ref|NM_001012525.1| Gallus gallus fibroblast growth factor 7 (ke... 42 1.4
4emb|CR354361.1| Gallus gallus finished cDNA, clone ChEST537f11 42 1.4
5dbj|AB193566.1| Gallus gallus Fgf7 mRNA for Fibroblast growth fa... 42 1.4
6emb|BX929277.1| Gallus gallus finished cDNA, clone ChEST984o1 42 1.4
7gb|AC138218.15| Mus musculus chromosome 1, clone RP23-387H2, com... 40 5.7
8emb|AL772227.5| Mouse DNA sequence from clone RP23-1O16 on chrom... 40 5.7
9gb|AC002339.3| Arabidopsis thaliana chromosome 2 clone T11A7 map... 40 5.7
10gb|AC100782.2| Homo sapiens, clone RP11-300E4, complete sequence 40 5.7
11dbj|AK033531.1| Mus musculus adult male colon cDNA, RIKEN full-l... 40 5.7
12gb|AC022274.5|AC022274 Homo sapiens BAC clone RP11-697M17 from 8... 40 5.7
13dbj|AK036920.1| Mus musculus adult female vagina cDNA, RIKEN ful... 40 5.7
14gb|AC159040.2| Pan troglodytes BAC clone CH251-149A3 from chromo... 40 5.7
15gb|AC068538.8| Homo sapiens BAC clone RP11-141G4 from 2, complet... 40 5.7
16dbj|BS000172.1| Pan troglodytes chromosome 22 clone:PTB-016G04, ... 40 5.7
17gb|AC132867.6| Mus musculus chromosome 1, clone RP24-388I23, com... 40 5.7
18emb|CR854957.11| Zebrafish DNA sequence from clone DKEY-211C10 i... 40 5.7

>gb|BT009037.1| Triticum aestivum clone wdk5c.pk0001.d10:fis, full insert mRNA
            sequence
          Length = 1200

 Score =  178 bits (90), Expect = 1e-41
 Identities = 129/140 (92%), Gaps = 4/140 (2%)
 Strand = Plus / Minus

                                                                        
Query: 280  gaaaccaacggggcgctgacagattgtacgactcgaaacataaccattcactttgcatga 339
            |||||||||||  ||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 1147 gaaaccaacggaacgctgacagattgtacgactccaaacacaaccattcactttgcatga 1088

                                                                        
Query: 340  aca--gtcacatggtactaagcataaacgtaactgaagttgccaatgc--ataacgtctg 395
            |||  |||||||||||||||||||||||||||  ||||||||||||||  ||||||||||
Sbjct: 1087 acagtgtcacatggtactaagcataaacgtaaaggaagttgccaatgcatataacgtctg 1028

                                
Query: 396  aaccaacaaagcagtatccc 415
            |||||||||||| |||||||
Sbjct: 1027 aaccaacaaagcggtatccc 1008



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>gb|AC164556.2| Mus musculus BAC clone RP23-334L9 from chromosome 12, complete sequence
          Length = 182308

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 61    aaatcacctttagatcacttt 81
             |||||||||||||||||||||
Sbjct: 47545 aaatcacctttagatcacttt 47525



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>ref|NM_001012525.1| Gallus gallus fibroblast growth factor 7 (keratinocyte growth
           factor) (FGF7), mRNA
          Length = 681

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 234 gacgagagaagcaaacaacaa 254
           |||||||||||||||||||||
Sbjct: 335 gacgagagaagcaaacaacaa 355



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>emb|CR354361.1| Gallus gallus finished cDNA, clone ChEST537f11
          Length = 1390

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 234 gacgagagaagcaaacaacaa 254
           |||||||||||||||||||||
Sbjct: 747 gacgagagaagcaaacaacaa 767



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>dbj|AB193566.1| Gallus gallus Fgf7 mRNA for Fibroblast growth factor 7, complete
           cds
          Length = 681

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 234 gacgagagaagcaaacaacaa 254
           |||||||||||||||||||||
Sbjct: 335 gacgagagaagcaaacaacaa 355



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>emb|BX929277.1| Gallus gallus finished cDNA, clone ChEST984o1
          Length = 608

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 234 gacgagagaagcaaacaacaa 254
           |||||||||||||||||||||
Sbjct: 340 gacgagagaagcaaacaacaa 360



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>gb|AC138218.15| Mus musculus chromosome 1, clone RP23-387H2, complete sequence
          Length = 188661

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    caaaacaaaaatccaatttt 47
             ||||||||||||||||||||
Sbjct: 59178 caaaacaaaaatccaatttt 59197



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>emb|AL772227.5| Mouse DNA sequence from clone RP23-1O16 on chromosome 11 Contains two
             novel genes, the 5' end of the gene for a novel protein
             similar to human Class V ATPase type 10B (ATP10B)
             (9030605H24Rik) and the 3' end of a novel gene, complete
             sequence
          Length = 178001

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 237   gagagaagcaaacaacaatg 256
             ||||||||||||||||||||
Sbjct: 76600 gagagaagcaaacaacaatg 76581



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>gb|AC002339.3| Arabidopsis thaliana chromosome 2 clone T11A7 map CIC11C08, complete
             sequence
          Length = 91071

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    aaaatccaattttagtacga 54
             ||||||||||||||||||||
Sbjct: 84816 aaaatccaattttagtacga 84797



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>gb|AC100782.2| Homo sapiens, clone RP11-300E4, complete sequence
          Length = 185123

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    caaaacaaaaatccaatttt 47
             ||||||||||||||||||||
Sbjct: 30643 caaaacaaaaatccaatttt 30662



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>dbj|AK033531.1| Mus musculus adult male colon cDNA, RIKEN full-length enriched
            library, clone:9030605H24 product:hypothetical Membrane
            all-alpha structure containing protein, full insert
            sequence
          Length = 3477

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 237  gagagaagcaaacaacaatg 256
            ||||||||||||||||||||
Sbjct: 1093 gagagaagcaaacaacaatg 1074



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>gb|AC022274.5|AC022274 Homo sapiens BAC clone RP11-697M17 from 8, complete sequence
          Length = 190701

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 28   caaaacaaaaatccaatttt 47
            ||||||||||||||||||||
Sbjct: 2586 caaaacaaaaatccaatttt 2567



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>dbj|AK036920.1| Mus musculus adult female vagina cDNA, RIKEN full-length enriched
            library, clone:9930024M01 product:unclassifiable, full
            insert sequence
          Length = 2280

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 237  gagagaagcaaacaacaatg 256
            ||||||||||||||||||||
Sbjct: 1354 gagagaagcaaacaacaatg 1335



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>gb|AC159040.2| Pan troglodytes BAC clone CH251-149A3 from chromosome unknown, complete
             sequence
          Length = 174983

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 381   aatgcataacgtctgaacca 400
             ||||||||||||||||||||
Sbjct: 62564 aatgcataacgtctgaacca 62583



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>gb|AC068538.8| Homo sapiens BAC clone RP11-141G4 from 2, complete sequence
          Length = 173169

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 259   cgaataaaattccaactaaa 278
             ||||||||||||||||||||
Sbjct: 40755 cgaataaaattccaactaaa 40774



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>dbj|BS000172.1| Pan troglodytes chromosome 22 clone:PTB-016G04, map 22, complete
             sequences
          Length = 220133

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 80    ttgctcagcaataccgtttt 99
             ||||||||||||||||||||
Sbjct: 76137 ttgctcagcaataccgtttt 76156



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>gb|AC132867.6| Mus musculus chromosome 1, clone RP24-388I23, complete sequence
          Length = 209151

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    caaaacaaaaatccaatttt 47
             ||||||||||||||||||||
Sbjct: 17860 caaaacaaaaatccaatttt 17879



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>emb|CR854957.11| Zebrafish DNA sequence from clone DKEY-211C10 in linkage group 16,
             complete sequence
          Length = 131039

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 175   gcggcattccttcctgtgct 194
             ||||||||||||||||||||
Sbjct: 78397 gcggcattccttcctgtgct 78416


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,777,973
Number of Sequences: 3902068
Number of extensions: 3777973
Number of successful extensions: 62493
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62467
Number of HSP's gapped (non-prelim): 24
length of query: 423
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 401
effective length of database: 17,147,199,772
effective search space: 6876027108572
effective search space used: 6876027108572
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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