Clone Name | rbastl32g03 |
---|---|
Clone Library Name | barley_pub |
>gb|BT009037.1| Triticum aestivum clone wdk5c.pk0001.d10:fis, full insert mRNA sequence Length = 1200 Score = 178 bits (90), Expect = 1e-41 Identities = 129/140 (92%), Gaps = 4/140 (2%) Strand = Plus / Minus Query: 280 gaaaccaacggggcgctgacagattgtacgactcgaaacataaccattcactttgcatga 339 ||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct: 1147 gaaaccaacggaacgctgacagattgtacgactccaaacacaaccattcactttgcatga 1088 Query: 340 aca--gtcacatggtactaagcataaacgtaactgaagttgccaatgc--ataacgtctg 395 ||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct: 1087 acagtgtcacatggtactaagcataaacgtaaaggaagttgccaatgcatataacgtctg 1028 Query: 396 aaccaacaaagcagtatccc 415 |||||||||||| ||||||| Sbjct: 1027 aaccaacaaagcggtatccc 1008
>gb|AC164556.2| Mus musculus BAC clone RP23-334L9 from chromosome 12, complete sequence Length = 182308 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 61 aaatcacctttagatcacttt 81 ||||||||||||||||||||| Sbjct: 47545 aaatcacctttagatcacttt 47525
>ref|NM_001012525.1| Gallus gallus fibroblast growth factor 7 (keratinocyte growth factor) (FGF7), mRNA Length = 681 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 234 gacgagagaagcaaacaacaa 254 ||||||||||||||||||||| Sbjct: 335 gacgagagaagcaaacaacaa 355
>emb|CR354361.1| Gallus gallus finished cDNA, clone ChEST537f11 Length = 1390 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 234 gacgagagaagcaaacaacaa 254 ||||||||||||||||||||| Sbjct: 747 gacgagagaagcaaacaacaa 767
>dbj|AB193566.1| Gallus gallus Fgf7 mRNA for Fibroblast growth factor 7, complete cds Length = 681 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 234 gacgagagaagcaaacaacaa 254 ||||||||||||||||||||| Sbjct: 335 gacgagagaagcaaacaacaa 355
>emb|BX929277.1| Gallus gallus finished cDNA, clone ChEST984o1 Length = 608 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 234 gacgagagaagcaaacaacaa 254 ||||||||||||||||||||| Sbjct: 340 gacgagagaagcaaacaacaa 360
>gb|AC138218.15| Mus musculus chromosome 1, clone RP23-387H2, complete sequence Length = 188661 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 caaaacaaaaatccaatttt 47 |||||||||||||||||||| Sbjct: 59178 caaaacaaaaatccaatttt 59197
>emb|AL772227.5| Mouse DNA sequence from clone RP23-1O16 on chromosome 11 Contains two novel genes, the 5' end of the gene for a novel protein similar to human Class V ATPase type 10B (ATP10B) (9030605H24Rik) and the 3' end of a novel gene, complete sequence Length = 178001 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 gagagaagcaaacaacaatg 256 |||||||||||||||||||| Sbjct: 76600 gagagaagcaaacaacaatg 76581
>gb|AC002339.3| Arabidopsis thaliana chromosome 2 clone T11A7 map CIC11C08, complete sequence Length = 91071 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 aaaatccaattttagtacga 54 |||||||||||||||||||| Sbjct: 84816 aaaatccaattttagtacga 84797
>gb|AC100782.2| Homo sapiens, clone RP11-300E4, complete sequence Length = 185123 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 caaaacaaaaatccaatttt 47 |||||||||||||||||||| Sbjct: 30643 caaaacaaaaatccaatttt 30662
>dbj|AK033531.1| Mus musculus adult male colon cDNA, RIKEN full-length enriched library, clone:9030605H24 product:hypothetical Membrane all-alpha structure containing protein, full insert sequence Length = 3477 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 gagagaagcaaacaacaatg 256 |||||||||||||||||||| Sbjct: 1093 gagagaagcaaacaacaatg 1074
>gb|AC022274.5|AC022274 Homo sapiens BAC clone RP11-697M17 from 8, complete sequence Length = 190701 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 caaaacaaaaatccaatttt 47 |||||||||||||||||||| Sbjct: 2586 caaaacaaaaatccaatttt 2567
>dbj|AK036920.1| Mus musculus adult female vagina cDNA, RIKEN full-length enriched library, clone:9930024M01 product:unclassifiable, full insert sequence Length = 2280 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 gagagaagcaaacaacaatg 256 |||||||||||||||||||| Sbjct: 1354 gagagaagcaaacaacaatg 1335
>gb|AC159040.2| Pan troglodytes BAC clone CH251-149A3 from chromosome unknown, complete sequence Length = 174983 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 381 aatgcataacgtctgaacca 400 |||||||||||||||||||| Sbjct: 62564 aatgcataacgtctgaacca 62583
>gb|AC068538.8| Homo sapiens BAC clone RP11-141G4 from 2, complete sequence Length = 173169 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 cgaataaaattccaactaaa 278 |||||||||||||||||||| Sbjct: 40755 cgaataaaattccaactaaa 40774
>dbj|BS000172.1| Pan troglodytes chromosome 22 clone:PTB-016G04, map 22, complete sequences Length = 220133 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 80 ttgctcagcaataccgtttt 99 |||||||||||||||||||| Sbjct: 76137 ttgctcagcaataccgtttt 76156
>gb|AC132867.6| Mus musculus chromosome 1, clone RP24-388I23, complete sequence Length = 209151 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 caaaacaaaaatccaatttt 47 |||||||||||||||||||| Sbjct: 17860 caaaacaaaaatccaatttt 17879
>emb|CR854957.11| Zebrafish DNA sequence from clone DKEY-211C10 in linkage group 16, complete sequence Length = 131039 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 gcggcattccttcctgtgct 194 |||||||||||||||||||| Sbjct: 78397 gcggcattccttcctgtgct 78416 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,777,973 Number of Sequences: 3902068 Number of extensions: 3777973 Number of successful extensions: 62493 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62467 Number of HSP's gapped (non-prelim): 24 length of query: 423 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 401 effective length of database: 17,147,199,772 effective search space: 6876027108572 effective search space used: 6876027108572 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)