ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl32g01 |
|---|---|
| Clone Library Name | barley_pub |
>SYV_RAT (Q04462) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 1264 Score = 37.7 bits (86), Expect = 0.012 Identities = 21/50 (42%), Positives = 26/50 (52%) Frame = -1 Query: 427 KRDEIQKLQHALSQKMEASGYREKAPPSVQEEDMRKLTAFFEQLRVIGEA 278 KR E Q+ L ++ ASGY K P VQE D KL +LR + EA Sbjct: 1207 KRSEAQRQAQRLQERRAASGYSAKVPLEVQEADEVKLQQTEAELRKVDEA 1256
>SYV_FUGRU (P49696) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 1217 Score = 37.4 bits (85), Expect = 0.015 Identities = 18/50 (36%), Positives = 28/50 (56%) Frame = -1 Query: 427 KRDEIQKLQHALSQKMEASGYREKAPPSVQEEDMRKLTAFFEQLRVIGEA 278 K+ +++K LS+K+ Y+EK P VQE+D KL +L + EA Sbjct: 1160 KKTDLEKQIEKLSEKISKGDYKEKVPVKVQEQDTEKLRQSQTELEKVKEA 1209
>SYV_MOUSE (Q9Z1Q9) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) (Protein G7a) Length = 1263 Score = 36.2 bits (82), Expect = 0.034 Identities = 20/50 (40%), Positives = 25/50 (50%) Frame = -1 Query: 427 KRDEIQKLQHALSQKMEASGYREKAPPSVQEEDMRKLTAFFEQLRVIGEA 278 KR E Q+ L ++ AS Y K P VQE D KL +LR + EA Sbjct: 1206 KRSEAQRQAQRLQERRAASSYSAKVPLEVQEADEAKLQQTEAELRKVDEA 1255
>SYV_HUMAN (P26640) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) (Protein G7a) Length = 1264 Score = 36.2 bits (82), Expect = 0.034 Identities = 21/50 (42%), Positives = 26/50 (52%) Frame = -1 Query: 427 KRDEIQKLQHALSQKMEASGYREKAPPSVQEEDMRKLTAFFEQLRVIGEA 278 KR E Q+ L ++ ASGY K P VQE D KL +LR + EA Sbjct: 1207 KRVEAQRQAQRLRERRAASGYPVKVPLEVQEADEAKLQQTEAELRKVDEA 1256
>SYV_ARATH (P93736) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 1108 Score = 33.9 bits (76), Expect = 0.17 Identities = 16/56 (28%), Positives = 28/56 (50%) Frame = -1 Query: 427 KRDEIQKLQHALSQKMEASGYREKAPPSVQEEDMRKLTAFFEQLRVIGEAEKKLDA 260 K E+QK + L + M S Y EK P +++E++ KL ++ + +L A Sbjct: 1045 KIGELQKQKEKLQKMMSVSTYEEKVPANIKEDNANKLAKILQEFDFFEKESARLAA 1100
>SYV_ACIAD (Q6F8F0) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 971 Score = 33.9 bits (76), Expect = 0.17 Identities = 18/57 (31%), Positives = 32/57 (56%) Frame = -1 Query: 430 KKRDEIQKLQHALSQKMEASGYREKAPPSVQEEDMRKLTAFFEQLRVIGEAEKKLDA 260 K D++QK ++ K+ G+ KAP +V E + KL F +QL I ++ +++ A Sbjct: 914 KDLDKVQKQHDQIASKLANEGFVAKAPAAVVEGEKVKLAEFADQLVKIKQSMEQIAA 970
>HLYB_TREHY (Q54316) Hemolysin B| Length = 828 Score = 29.6 bits (65), Expect(2) = 0.43 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 4/59 (6%) Frame = -1 Query: 430 KKRDEIQKLQHALSQKME-ASGYREKAPPSVQEEDMRKLTAFFEQL---RVIGEAEKKL 266 K RDEI LQ LS+K E REK ++E+D+R + + + R++ K+L Sbjct: 450 KIRDEITSLQEELSKKEEKCREEREKIETFIEEDDIRHVISEITNIPIKRLLNSESKRL 508 Score = 21.6 bits (44), Expect(2) = 0.43 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 3/38 (7%) Frame = -3 Query: 239 VGSLFLLGPTGI---FVWKLILHLFFADGGDVTFIENS 135 +GS LGPTG+ + K++ F D + I+ S Sbjct: 547 LGSFIFLGPTGVGKTALAKVLSEFMFGDSDALIRIDMS 584
>SYV_THETH (P96142) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 862 Score = 32.3 bits (72), Expect = 0.49 Identities = 18/51 (35%), Positives = 26/51 (50%) Frame = -1 Query: 430 KKRDEIQKLQHALSQKMEASGYREKAPPSVQEEDMRKLTAFFEQLRVIGEA 278 K+ E+ L +K+ + G+REKAP V E + +L EQ I EA Sbjct: 807 KRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAERIREA 857
>SYV_THET8 (Q5SJ45) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 862 Score = 32.3 bits (72), Expect = 0.49 Identities = 18/51 (35%), Positives = 26/51 (50%) Frame = -1 Query: 430 KKRDEIQKLQHALSQKMEASGYREKAPPSVQEEDMRKLTAFFEQLRVIGEA 278 K+ E+ L +K+ + G+REKAP V E + +L EQ I EA Sbjct: 807 KRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAERIREA 857
>SYV_THET2 (Q72JG7) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 862 Score = 32.3 bits (72), Expect = 0.49 Identities = 18/51 (35%), Positives = 26/51 (50%) Frame = -1 Query: 430 KKRDEIQKLQHALSQKMEASGYREKAPPSVQEEDMRKLTAFFEQLRVIGEA 278 K+ E+ L +K+ + G+REKAP V E + +L EQ I EA Sbjct: 807 KRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLRENLEQAERIREA 857
>SYV_CARHZ (Q3AF87) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 878 Score = 32.3 bits (72), Expect = 0.49 Identities = 14/36 (38%), Positives = 22/36 (61%) Frame = -1 Query: 394 LSQKMEASGYREKAPPSVQEEDMRKLTAFFEQLRVI 287 L+QK+ G+ KAP V ++ KLTAF+ + V+ Sbjct: 832 LNQKLNNPGFLAKAPAEVVNKEREKLTAFYREKEVL 867
>UBIE_BRUME (Q8YDE4) Ubiquinone/menaquinone biosynthesis methyltransferase ubiE| (EC 2.1.1.-) Length = 269 Score = 32.0 bits (71), Expect = 0.64 Identities = 15/42 (35%), Positives = 27/42 (64%) Frame = +2 Query: 296 QLLEKGGELPHVLLLDTGGSLLSVTGRFHLLRQGML*LLDFI 421 +++E G HV +LD GS+L V GR +++G++ L+F+ Sbjct: 98 RIVEASGRQAHVTILDINGSMLGV-GRERAIKKGLIDNLEFV 138
>SYV_NEIMB (Q9K1H7) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 945 Score = 31.6 bits (70), Expect = 0.83 Identities = 16/55 (29%), Positives = 28/55 (50%) Frame = -1 Query: 430 KKRDEIQKLQHALSQKMEASGYREKAPPSVQEEDMRKLTAFFEQLRVIGEAEKKL 266 K+ +++QK L+ K+ GY EKAP + E+D L +++ + KL Sbjct: 889 KEAEKLQKALDKLNAKLSKPGYTEKAPAHLVEKDKADLAELEDKMAKVQNQLAKL 943
>SYV_NEIMA (Q9JX22) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 945 Score = 31.6 bits (70), Expect = 0.83 Identities = 16/55 (29%), Positives = 28/55 (50%) Frame = -1 Query: 430 KKRDEIQKLQHALSQKMEASGYREKAPPSVQEEDMRKLTAFFEQLRVIGEAEKKL 266 K+ +++QK L+ K+ GY EKAP + E+D L +++ + KL Sbjct: 889 KEAEKLQKALDKLNAKLSKPGYTEKAPAHLVEKDKADLAELEDKMAKVQTQLSKL 943
>SYV_NEIG1 (Q5F5W0) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 945 Score = 31.6 bits (70), Expect = 0.83 Identities = 16/55 (29%), Positives = 28/55 (50%) Frame = -1 Query: 430 KKRDEIQKLQHALSQKMEASGYREKAPPSVQEEDMRKLTAFFEQLRVIGEAEKKL 266 K+ +++QK L+ K+ GY EKAP + E+D L +++ + KL Sbjct: 889 KEAEKLQKALDKLNAKLSKPGYTEKAPAHLVEKDKADLAELEDKMAKVQNQLAKL 943
>UBIE_BRUSU (Q8FUZ3) Ubiquinone/menaquinone biosynthesis methyltransferase ubiE| (EC 2.1.1.-) Length = 269 Score = 31.6 bits (70), Expect = 0.83 Identities = 15/42 (35%), Positives = 27/42 (64%) Frame = +2 Query: 296 QLLEKGGELPHVLLLDTGGSLLSVTGRFHLLRQGML*LLDFI 421 +++E G HV +LD GS+L V GR +++G++ L+F+ Sbjct: 98 RIVEVSGRQAHVTILDINGSMLGV-GRERAIKKGLIDNLEFV 138
>SYV_PELCD (Q3A253) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 899 Score = 30.4 bits (67), Expect = 1.9 Identities = 17/57 (29%), Positives = 32/57 (56%) Frame = -1 Query: 430 KKRDEIQKLQHALSQKMEASGYREKAPPSVQEEDMRKLTAFFEQLRVIGEAEKKLDA 260 K+ +++K S+K+ + KAP +V E+D +KL E+L ++ + +KL A Sbjct: 841 KEIAKVEKDVLMFSKKLSNESFLAKAPAAVLEKDRQKLADAEEKLSILKQGLEKLAA 897
>SYV_BACHD (Q9K8G8) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 880 Score = 29.6 bits (65), Expect = 3.2 Identities = 14/55 (25%), Positives = 29/55 (52%) Frame = -1 Query: 430 KKRDEIQKLQHALSQKMEASGYREKAPPSVQEEDMRKLTAFFEQLRVIGEAEKKL 266 K+ ++++K + +K+ G+ KAP V EE+ +K + E+ + K+L Sbjct: 824 KEENKLEKEVERVQKKLSNQGFLAKAPEKVIEEERKKEADYLEKRAAVRARIKEL 878
>CD2AP_HUMAN (Q9Y5K6) CD2-associated protein (Cas ligand with multiple SH3| domains) (Adapter protein CMS) Length = 639 Score = 28.5 bits (62), Expect = 7.1 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 3/64 (4%) Frame = +2 Query: 167 PQKKGAVSTSKQKCQ*VPI---ETESRLKSTARLRI*FLLSLTDDPQLLEKGGELPHVLL 337 P+K + + K Q V I +TE ++K+ R F T++ +L K GE+ H++ Sbjct: 241 PEKPLILQSLGPKTQSVEITKTDTEGKIKAKEYCRTLFAYEGTNEDELTFKEGEIIHLIS 300 Query: 338 LDTG 349 +TG Sbjct: 301 KETG 304
>MYH7_HUMAN (P12883) Myosin heavy chain, cardiac muscle beta isoform (MyHC-beta)| Length = 1935 Score = 28.1 bits (61), Expect = 9.2 Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Frame = -1 Query: 418 EIQKLQHAL-SQKMEASGYREKAPPSVQEEDMRKLTAFFEQLRVIGEAEKKL 266 E++K++ L ++KME E+A S++ E+ + L A E ++ E E+KL Sbjct: 1525 ELEKVRKQLEAEKMELQSALEEAEASLEHEEGKILRAQLEFNQIKAEIERKL 1576
>Y4417_BACTN (Q89ZG0) UPF0144 protein BT_4417| Length = 511 Score = 28.1 bits (61), Expect = 9.2 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 6/51 (11%) Frame = -1 Query: 430 KKRDEIQKLQHALSQKMEA-SGY-----REKAPPSVQEEDMRKLTAFFEQL 296 KK++E+ KLQH +K+EA SG +E+ S++EE + +F + Sbjct: 119 KKKEELDKLQHQEIEKLEAISGLSADEAKERLVESLKEEAKTQAQSFINDI 169
>SYV_CHRVO (Q7NUM8) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 939 Score = 28.1 bits (61), Expect = 9.2 Identities = 14/48 (29%), Positives = 26/48 (54%) Frame = -1 Query: 430 KKRDEIQKLQHALSQKMEASGYREKAPPSVQEEDMRKLTAFFEQLRVI 287 K++ +++ L+ K+E GY +KAP + E D +L ++L I Sbjct: 884 KEQGKVEAELAKLTAKLEKPGYVDKAPAHLVERDKAQLAELNDKLEKI 931
>SYV_GEOKA (Q5KWL3) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 880 Score = 28.1 bits (61), Expect = 9.2 Identities = 14/48 (29%), Positives = 24/48 (50%) Frame = -1 Query: 430 KKRDEIQKLQHALSQKMEASGYREKAPPSVQEEDMRKLTAFFEQLRVI 287 K+ D+ K + +K+ G+ KAP V EE+ RK + E+ + Sbjct: 824 KELDKWNKEVERVEKKLANEGFLAKAPAHVVEEERRKRQDYIEKREAV 871
>SYV_BACST (P11931) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 880 Score = 28.1 bits (61), Expect = 9.2 Identities = 14/48 (29%), Positives = 24/48 (50%) Frame = -1 Query: 430 KKRDEIQKLQHALSQKMEASGYREKAPPSVQEEDMRKLTAFFEQLRVI 287 K+ D+ K + +K+ G+ KAP V EE+ RK + E+ + Sbjct: 824 KELDKWNKEVERVEKKLANEGFLAKAPAHVVEEERRKRQDYIEKREAV 871
>PSC_DROME (P35820) Polycomb group protein Psc (Protein posterior sex combs)| Length = 1601 Score = 28.1 bits (61), Expect = 9.2 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%) Frame = +1 Query: 10 PSRPSISHFREVA---FEVDTQHSQINIIYKRKAIV 108 P+ +SH ++ FE+D Q I+I+YK K IV Sbjct: 403 PAMCRVSHLKKFVYDKFEIDAQRFSIDIMYKVKTIV 438
>MYH6_MESAU (P13539) Myosin heavy chain, cardiac muscle alpha isoform| (MyHC-alpha) Length = 1939 Score = 28.1 bits (61), Expect = 9.2 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%) Frame = -1 Query: 430 KKRDEIQKLQHALS-QKMEASGYREKAPPSVQEEDMRKLTAFFEQLRVIGEAEKKL 266 K E++K++ L +KME E+A S++ E+ + L A E ++ E E+KL Sbjct: 1523 KNVHELEKVRKQLEVEKMELQSALEEAEASLEHEEGKILRAQLEFNQIKAEIERKL 1578
>UBIE_RHIME (Q92SK7) Ubiquinone/menaquinone biosynthesis methyltransferase ubiE| (EC 2.1.1.-) Length = 258 Score = 28.1 bits (61), Expect = 9.2 Identities = 15/42 (35%), Positives = 25/42 (59%) Frame = +2 Query: 296 QLLEKGGELPHVLLLDTGGSLLSVTGRFHLLRQGML*LLDFI 421 +++E+ G H +LD GS+LSV G ++G+ LDF+ Sbjct: 87 RIVERSGRKAHATVLDINGSMLSV-GAERARKKGIEANLDFV 127
>MYH7_MESAU (P13540) Myosin heavy chain, cardiac muscle beta isoform (MyHC-beta)| Length = 1934 Score = 28.1 bits (61), Expect = 9.2 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%) Frame = -1 Query: 430 KKRDEIQKLQHAL-SQKMEASGYREKAPPSVQEEDMRKLTAFFEQLRVIGEAEKKL 266 K E++K++ L ++KME E+A S++ E+ L A E ++ E E+KL Sbjct: 1520 KSIHELEKIRKQLEAEKMELQSALEEAEASLEHEEGNILRAQLEFNQIKAEIERKL 1575 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,343,612 Number of Sequences: 219361 Number of extensions: 1184977 Number of successful extensions: 3441 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 3388 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3441 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
