ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl32f11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_464514.1| Oryza sativa (japonica cultivar-group), mRNA 94 4e-16
2ref|XM_464515.1| Oryza sativa (japonica cultivar-group), mRNA 94 4e-16
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 94 4e-16
4dbj|AP004869.3| Oryza sativa (japonica cultivar-group) genomic D... 94 4e-16
5dbj|AK067705.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 4e-16
6dbj|AK064800.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 4e-16
7dbj|AK062067.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 4e-16
8dbj|AK061400.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 4e-16
9ref|XM_635266.1| Dictyostelium discoideum hypothetical protein (... 42 1.3
10emb|BX469912.5| Zebrafish DNA sequence from clone CH211-156L18 i... 42 1.3
11emb|Z74813.1|SCYOL071W S.cerevisiae chromosome XV reading frame ... 42 1.3
12emb|Z74812.1|SCYOL070C S.cerevisiae chromosome XV reading frame ... 42 1.3
13emb|BX088719.6| Zebrafish DNA sequence from clone CH211-207H2 in... 42 1.3
14gb|AC131697.4| Mus musculus BAC clone RP23-407K12 from 1, comple... 42 1.3
15ref|XM_642043.1| Dictyostelium discoideum kinesin-related protei... 40 5.3
16gb|AF117829.3| Homo sapiens chromosome 8 multiple clones map q21... 40 5.3
17gb|AC107369.9| Mus musculus chromosome 15, clone RP23-368M2, com... 40 5.3
18emb|CR925678.1| Ehrlichia ruminantium str. Welgevonden, complete... 40 5.3
19emb|CR925677.1| Ehrlichia ruminantium str. Gardel, complete genome 40 5.3
20emb|CR767821.1| Ehrlichia ruminantium strain Welgevonden, comple... 40 5.3
21gb|AC164615.3| Mus musculus BAC clone RP23-320N6 from chromosome... 40 5.3
22gb|AC126794.15| Medicago truncatula clone mth2-24j7, complete se... 40 5.3
23dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
24dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete ge... 40 5.3
25dbj|AP004381.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
26dbj|AB018117.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 5.3
27gb|AC004459.1|AC004459 Homo sapiens BAC clone CTA-273G1 from 8q2... 40 5.3
28gb|AC123939.5| Mus musculus BAC clone RP23-418I14 from 12, compl... 40 5.3
29emb|BX000697.7| Zebrafish DNA sequence from clone CH211-120M13 i... 40 5.3
30gb|AC133283.13| Mus musculus chromosome 15, clone RP24-435N1, co... 40 5.3
31dbj|AB104735.1| Marsupenaeus japonicus mRNA for cathepsin C, com... 40 5.3
32dbj|AB037280.1| Dictyostelium discoideum DdK2 gene for Dd kinesi... 40 5.3
33emb|CT009569.17| Pig DNA sequence from clone CH242-213C10 on chr... 40 5.3
34gb|AC160645.2| Gallus gallus BAC clone CH261-21L11 from chromoso... 40 5.3
35gb|AF015712.1|AF015712 Dictyostelium discoideum kinesin-related ... 40 5.3 
>ref|XM_464514.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2525

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 89/102 (87%), Gaps = 2/102 (1%)
 Strand = Plus / Minus

                                                                        
Query: 8    aaacacatacttcatttattcttataaggttgcaaatattacagtcctcaacaacatgcc 67
            |||||||||||| ||||||||| | ||||||||||| ||||||||||||||||| |||||
Sbjct: 2520 aaacacatacttaatttattctgagaaggttgcaaagattacagtcctcaacaatatgcc 2461

                                                      
Query: 68   ggaaaaatcagggacctgtcaagaaaaaacaaccataaaagg 109
            || |||| |||||| |||    ||||||||||||||| ||||
Sbjct: 2460 ggtaaaaacagggatctg--gtgaaaaaacaaccatacaagg 2421
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>ref|XM_464515.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2981

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 89/102 (87%), Gaps = 2/102 (1%)
 Strand = Plus / Minus

                                                                        
Query: 8    aaacacatacttcatttattcttataaggttgcaaatattacagtcctcaacaacatgcc 67
            |||||||||||| ||||||||| | ||||||||||| ||||||||||||||||| |||||
Sbjct: 2976 aaacacatacttaatttattctgagaaggttgcaaagattacagtcctcaacaatatgcc 2917

                                                      
Query: 68   ggaaaaatcagggacctgtcaagaaaaaacaaccataaaagg 109
            || |||| |||||| |||    ||||||||||||||| ||||
Sbjct: 2916 ggtaaaaacagggatctg--gtgaaaaaacaaccatacaagg 2877
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 89/102 (87%), Gaps = 2/102 (1%)
 Strand = Plus / Plus

                                                                           
Query: 8       aaacacatacttcatttattcttataaggttgcaaatattacagtcctcaacaacatgcc 67
               |||||||||||| ||||||||| | ||||||||||| ||||||||||||||||| |||||
Sbjct: 5628127 aaacacatacttaatttattctgagaaggttgcaaagattacagtcctcaacaatatgcc 5628186

                                                         
Query: 68      ggaaaaatcagggacctgtcaagaaaaaacaaccataaaagg 109
               || |||| |||||| |||    ||||||||||||||| ||||
Sbjct: 5628187 ggtaaaaacagggatctg--gtgaaaaaacaaccatacaagg 5628226
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>dbj|AP004869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0419A09
          Length = 168064

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 89/102 (87%), Gaps = 2/102 (1%)
 Strand = Plus / Plus

                                                                         
Query: 8     aaacacatacttcatttattcttataaggttgcaaatattacagtcctcaacaacatgcc 67
             |||||||||||| ||||||||| | ||||||||||| ||||||||||||||||| |||||
Sbjct: 55863 aaacacatacttaatttattctgagaaggttgcaaagattacagtcctcaacaatatgcc 55922

                                                       
Query: 68    ggaaaaatcagggacctgtcaagaaaaaacaaccataaaagg 109
             || |||| |||||| |||    ||||||||||||||| ||||
Sbjct: 55923 ggtaaaaacagggatctg--gtgaaaaaacaaccatacaagg 55962
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>dbj|AK067705.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116M10, full
            insert sequence
          Length = 2525

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 89/102 (87%), Gaps = 2/102 (1%)
 Strand = Plus / Minus

                                                                        
Query: 8    aaacacatacttcatttattcttataaggttgcaaatattacagtcctcaacaacatgcc 67
            |||||||||||| ||||||||| | ||||||||||| ||||||||||||||||| |||||
Sbjct: 2520 aaacacatacttaatttattctgagaaggttgcaaagattacagtcctcaacaatatgcc 2461

                                                      
Query: 68   ggaaaaatcagggacctgtcaagaaaaaacaaccataaaagg 109
            || |||| |||||| |||    ||||||||||||||| ||||
Sbjct: 2460 ggtaaaaacagggatctg--gtgaaaaaacaaccatacaagg 2421
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>dbj|AK064800.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000D06, full
            insert sequence
          Length = 2981

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 89/102 (87%), Gaps = 2/102 (1%)
 Strand = Plus / Minus

                                                                        
Query: 8    aaacacatacttcatttattcttataaggttgcaaatattacagtcctcaacaacatgcc 67
            |||||||||||| ||||||||| | ||||||||||| ||||||||||||||||| |||||
Sbjct: 2976 aaacacatacttaatttattctgagaaggttgcaaagattacagtcctcaacaatatgcc 2917

                                                      
Query: 68   ggaaaaatcagggacctgtcaagaaaaaacaaccataaaagg 109
            || |||| |||||| |||    ||||||||||||||| ||||
Sbjct: 2916 ggtaaaaacagggatctg--gtgaaaaaacaaccatacaagg 2877
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>dbj|AK062067.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-D11, full
            insert sequence
          Length = 1713

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 89/102 (87%), Gaps = 2/102 (1%)
 Strand = Plus / Minus

                                                                        
Query: 8    aaacacatacttcatttattcttataaggttgcaaatattacagtcctcaacaacatgcc 67
            |||||||||||| ||||||||| | ||||||||||| ||||||||||||||||| |||||
Sbjct: 1708 aaacacatacttaatttattctgagaaggttgcaaagattacagtcctcaacaatatgcc 1649

                                                      
Query: 68   ggaaaaatcagggacctgtcaagaaaaaacaaccataaaagg 109
            || |||| |||||| |||    ||||||||||||||| ||||
Sbjct: 1648 ggtaaaaacagggatctg--gtgaaaaaacaaccatacaagg 1609
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>dbj|AK061400.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-G02, full
           insert sequence
          Length = 998

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 89/102 (87%), Gaps = 2/102 (1%)
 Strand = Plus / Minus

                                                                       
Query: 8   aaacacatacttcatttattcttataaggttgcaaatattacagtcctcaacaacatgcc 67
           |||||||||||| ||||||||| | ||||||||||| ||||||||||||||||| |||||
Sbjct: 993 aaacacatacttaatttattctgagaaggttgcaaagattacagtcctcaacaatatgcc 934

                                                     
Query: 68  ggaaaaatcagggacctgtcaagaaaaaacaaccataaaagg 109
           || |||| |||||| |||    ||||||||||||||| ||||
Sbjct: 933 ggtaaaaacagggatctg--gtgaaaaaacaaccatacaagg 894
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>ref|XM_635266.1| Dictyostelium discoideum hypothetical protein (DDB0205138), partial
           mRNA
          Length = 7689

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 270 caataacaatatcaatatcaa 290
           |||||||||||||||||||||
Sbjct: 489 caataacaatatcaatatcaa 509
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>emb|BX469912.5| Zebrafish DNA sequence from clone CH211-156L18 in linkage group 11,
              complete sequence
          Length = 175462

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 4      aaacaaacacatacttcattt 24
              |||||||||||||||||||||
Sbjct: 141423 aaacaaacacatacttcattt 141443
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>emb|Z74813.1|SCYOL071W S.cerevisiae chromosome XV reading frame ORF YOL071w
          Length = 882

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 270 caataacaatatcaatatcaa 290
           |||||||||||||||||||||
Sbjct: 832 caataacaatatcaatatcaa 812
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>emb|Z74812.1|SCYOL070C S.cerevisiae chromosome XV reading frame ORF YOL070c
          Length = 1946

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 270 caataacaatatcaatatcaa 290
           |||||||||||||||||||||
Sbjct: 174 caataacaatatcaatatcaa 154
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>emb|BX088719.6| Zebrafish DNA sequence from clone CH211-207H2 in linkage group 17,
              complete sequence
          Length = 205685

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 18     ttcatttattcttataaggttgcaa 42
              ||||||||||||||||| |||||||
Sbjct: 153175 ttcatttattcttataatgttgcaa 153151
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>gb|AC131697.4| Mus musculus BAC clone RP23-407K12 from 1, complete sequence
          Length = 199589

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 283    aatatcaaccagacatgccaa 303
              |||||||||||||||||||||
Sbjct: 102565 aatatcaaccagacatgccaa 102545
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>ref|XM_642043.1| Dictyostelium discoideum kinesin-related protein K2 (DDB0191126),
           partial mRNA
          Length = 2379

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 271 aataacaatatcaatatcaa 290
           ||||||||||||||||||||
Sbjct: 481 aataacaatatcaatatcaa 500
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>gb|AF117829.3| Homo sapiens chromosome 8 multiple clones map q21.3, complete sequence
          Length = 320187

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 89     agaaaaaacaaccataaaag 108
              ||||||||||||||||||||
Sbjct: 132548 agaaaaaacaaccataaaag 132567
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>gb|AC107369.9| Mus musculus chromosome 15, clone RP23-368M2, complete sequence
          Length = 216082

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 88   aagaaaaaacaaccataaaa 107
            ||||||||||||||||||||
Sbjct: 4374 aagaaaaaacaaccataaaa 4355
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>emb|CR925678.1| Ehrlichia ruminantium str. Welgevonden, complete genome
          Length = 1512977

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 4      aaacaaacacatacttcatt 23
              ||||||||||||||||||||
Sbjct: 474672 aaacaaacacatacttcatt 474653
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>emb|CR925677.1| Ehrlichia ruminantium str. Gardel, complete genome
          Length = 1499920

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 4      aaacaaacacatacttcatt 23
              ||||||||||||||||||||
Sbjct: 471926 aaacaaacacatacttcatt 471907
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>emb|CR767821.1| Ehrlichia ruminantium strain Welgevonden, complete genome
          Length = 1516355

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 4      aaacaaacacatacttcatt 23
              ||||||||||||||||||||
Sbjct: 494815 aaacaaacacatacttcatt 494796
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>gb|AC164615.3| Mus musculus BAC clone RP23-320N6 from chromosome 12, complete sequence
          Length = 201524

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 36     gttgcaaatattacagtcct 55
              ||||||||||||||||||||
Sbjct: 118856 gttgcaaatattacagtcct 118837
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>gb|AC126794.15| Medicago truncatula clone mth2-24j7, complete sequence
          Length = 129513

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 3     aaaacaaacacatacttcat 22
             ||||||||||||||||||||
Sbjct: 86243 aaaacaaacacatacttcat 86224
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 43      atattacagtcctcaacaac 62
               ||||||||||||||||||||
Sbjct: 2401512 atattacagtcctcaacaac 2401531
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>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome
          Length = 3630528

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 269     tcaataacaatatcaatatc 288
               ||||||||||||||||||||
Sbjct: 2192894 tcaataacaatatcaatatc 2192913
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>dbj|AP004381.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0025F03
          Length = 138042

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 43    atattacagtcctcaacaac 62
             ||||||||||||||||||||
Sbjct: 77482 atattacagtcctcaacaac 77501
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>dbj|AB018117.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQL5
          Length = 88398

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 8     aaacacatacttcatttatt 27
             ||||||||||||||||||||
Sbjct: 30278 aaacacatacttcatttatt 30259
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>gb|AC004459.1|AC004459 Homo sapiens BAC clone CTA-273G1 from 8q21, complete sequence
          Length = 41798

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 89    agaaaaaacaaccataaaag 108
             ||||||||||||||||||||
Sbjct: 34525 agaaaaaacaaccataaaag 34544
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>gb|AC123939.5| Mus musculus BAC clone RP23-418I14 from 12, complete sequence
          Length = 188743

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 36    gttgcaaatattacagtcct 55
             ||||||||||||||||||||
Sbjct: 22400 gttgcaaatattacagtcct 22381
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>emb|BX000697.7| Zebrafish DNA sequence from clone CH211-120M13 in linkage group 18,
              complete sequence
          Length = 186826

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 263    ccaaactcaataacaatatcaata 286
              |||||||||||||||||| |||||
Sbjct: 179392 ccaaactcaataacaataacaata 179369
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>gb|AC133283.13| Mus musculus chromosome 15, clone RP24-435N1, complete sequence
          Length = 154352

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 88    aagaaaaaacaaccataaaa 107
             ||||||||||||||||||||
Sbjct: 94329 aagaaaaaacaaccataaaa 94348
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>dbj|AB104735.1| Marsupenaeus japonicus mRNA for cathepsin C, complete cds
          Length = 2013

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 274  aacaatatcaatatcaaccagacatgcc 301
            |||| |||||||||||||||| ||||||
Sbjct: 1516 aacattatcaatatcaaccagtcatgcc 1489
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>dbj|AB037280.1| Dictyostelium discoideum DdK2 gene for Dd kinesin-related protein
           K2, complete cds
          Length = 2475

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 271 aataacaatatcaatatcaa 290
           ||||||||||||||||||||
Sbjct: 481 aataacaatatcaatatcaa 500
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>emb|CT009569.17| Pig DNA sequence from clone CH242-213C10 on chromosome 17, complete
              sequence
          Length = 201723

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 178    ggaaccgcaagaaaaaagcaaccc 201
              |||||||||||||||||| |||||
Sbjct: 109591 ggaaccgcaagaaaaaaggaaccc 109614
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>gb|AC160645.2| Gallus gallus BAC clone CH261-21L11 from chromosome unknown, complete
              sequence
          Length = 223748

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 370    atgaagcagtgaaaaaatga 389
              ||||||||||||||||||||
Sbjct: 182764 atgaagcagtgaaaaaatga 182783
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>gb|AF015712.1|AF015712 Dictyostelium discoideum kinesin-related protein K2 mRNA, partial
           cds
          Length = 2163

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 271 aataacaatatcaatatcaa 290
           ||||||||||||||||||||
Sbjct: 249 aataacaatatcaatatcaa 268


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,060,656
Number of Sequences: 3902068
Number of extensions: 4060656
Number of successful extensions: 79167
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78959
Number of HSP's gapped (non-prelim): 200
length of query: 393
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 371
effective length of database: 17,147,199,772
effective search space: 6361611115412
effective search space used: 6361611115412
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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