Clone Name | rbastl32f10 |
---|---|
Clone Library Name | barley_pub |
>gb|AC151815.1| Solanum demissum chromosome 5 clone PGEC472P22 map MAP_LOC, complete sequence Length = 136150 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 tgaaatataatagttccaaa 40 |||||||||||||||||||| Sbjct: 34616 tgaaatataatagttccaaa 34635
>gb|AC149290.1| Solanum demissum chromosome 5 clone PGEC093P17 map MAP_LOC, complete sequence Length = 200238 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tgaaatataatagttccaaa 40 |||||||||||||||||||| Sbjct: 13530 tgaaatataatagttccaaa 13511
>gb|AC149301.1| Solanum demissum chromosome 5 clone PGEC517A09 map MAP_LOC, complete sequence Length = 133983 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tgaaatataatagttccaaa 40 |||||||||||||||||||| Sbjct: 84044 tgaaatataatagttccaaa 84025
>gb|AY730340.1| Solanum tuberosum strain P6/210 clone BAC BA87d17, complete sequence Length = 75612 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 tgaaatataatagttccaaa 40 |||||||||||||||||||| Sbjct: 27303 tgaaatataatagttccaaa 27322
>gb|AY730336.1| Solanum tuberosum strain P6/210 clone BAC BA213c14, complete sequence Length = 72352 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 tgaaatataatagttccaaa 40 |||||||||||||||||||| Sbjct: 8917 tgaaatataatagttccaaa 8936
>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome Length = 5227419 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 atatgaaatataatagttcc 37 |||||||||||||||||||| Sbjct: 4332462 atatgaaatataatagttcc 4332481
>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome Length = 5228663 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 atatgaaatataatagttcc 37 |||||||||||||||||||| Sbjct: 4332835 atatgaaatataatagttcc 4332854
>gb|AC122172.30| Medicago truncatula clone mth2-27e7, complete sequence Length = 109532 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 atgatgaaacaaaagactag 69 |||||||||||||||||||| Sbjct: 28183 atgatgaaacaaaagactag 28164
>emb|AL611942.12| Human DNA sequence from clone RP11-125H17 on chromosome 1 Contains the PRPF3 gene for PRP3 pre-mRNA processing factor 3 homolog (yeast) and the 5' end of the gene for a novel protein (KIAA0460), complete sequence Length = 151182 Score = 40.1 bits (20), Expect = 1.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 7 gaaataataggatatgaaatataa 30 ||||||||| |||||||||||||| Sbjct: 73626 gaaataataagatatgaaatataa 73649
>emb|AL589943.26| Human DNA sequence from clone RP11-44D23 on chromosome 10, complete sequence Length = 139325 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 gaaataataggatatgaaat 26 |||||||||||||||||||| Sbjct: 36491 gaaataataggatatgaaat 36510
>gb|AC034099.16| Mus Musculus Strain C57BL6/J Chromosome 7 BAC, RP23-145I16, complete sequence Length = 229553 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 aaataataggatatgaaata 27 |||||||||||||||||||| Sbjct: 140476 aaataataggatatgaaata 140495
>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome Length = 5227293 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 atatgaaatataatagttcc 37 |||||||||||||||||||| Sbjct: 4332335 atatgaaatataatagttcc 4332354
>emb|AL731864.25| Mouse DNA sequence from clone RP23-342F20 on chromosome 7, complete sequence Length = 148047 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 aaataataggatatgaaata 27 |||||||||||||||||||| Sbjct: 90824 aaataataggatatgaaata 90805
>gb|AC092957.6| Homo sapiens 3 BAC RP11-635I10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 161585 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 gaaacaaaagactaggtaga 74 |||||||||||||||||||| Sbjct: 103999 gaaacaaaagactaggtaga 103980
>gb|AC139349.4| Mus musculus BAC clone RP24-318A14 from chromosome 8, complete sequence Length = 199464 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 47 ctaatgatgaaacaaaaga 65 ||||||||||||||||||| Sbjct: 116031 ctaatgatgaaacaaaaga 116013
>gb|AC110219.11| Mus musculus chromosome 1, clone RP24-541P18, complete sequence Length = 193614 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 9 aataataggatatgaaata 27 ||||||||||||||||||| Sbjct: 100077 aataataggatatgaaata 100059
>gb|AC126790.38| Medicago truncatula clone mth2-10d14, complete sequence Length = 127447 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 17 gatatgaaatataatagtt 35 ||||||||||||||||||| Sbjct: 99812 gatatgaaatataatagtt 99794
>emb|Z99758.8|HS800F24 Human DNA sequence from clone RP4-800F24 on chromosome 1q24 Contains part of the NME7 gene for protein expressed in non-metastatic cells 7 (nucleoside-diphosphate kinase) and a novel gene, complete sequence Length = 140788 Score = 38.2 bits (19), Expect = 5.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 49 aatgatgaaacaaaagactaggt 71 ||||||| ||||||||||||||| Sbjct: 108261 aatgatgtaacaaaagactaggt 108239
>gb|AC108924.5| Homo sapiens chromosome 8, clone RP11-1113C19, complete sequence Length = 125488 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 23 aaatataatagttccaaag 41 ||||||||||||||||||| Sbjct: 74947 aaatataatagttccaaag 74965
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 47 ctaatgatgaaacaaaaga 65 ||||||||||||||||||| Sbjct: 3743699 ctaatgatgaaacaaaaga 3743681
>emb|AL772302.20| Mouse DNA sequence from clone RP23-450F9 on chromosome 4, complete sequence Length = 202175 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 63 agactaggtagacaaaaca 81 ||||||||||||||||||| Sbjct: 63610 agactaggtagacaaaaca 63628
>dbj|AP005847.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ9990_A01 Length = 101684 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 47 ctaatgatgaaacaaaaga 65 ||||||||||||||||||| Sbjct: 67196 ctaatgatgaaacaaaaga 67178
>dbj|AP005605.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1449_C01 Length = 192857 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 47 ctaatgatgaaacaaaaga 65 ||||||||||||||||||| Sbjct: 8916 ctaatgatgaaacaaaaga 8898
>emb|AJ534204.1|GMO534204 Geum montanum partial gbssi-1 gene for granule-bound starch synthase, exons 1-9, clone 5-4 Length = 1797 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 37 caaagttaccctaatgatg 55 ||||||||||||||||||| Sbjct: 765 caaagttaccctaatgatg 783
>emb|AJ534203.1|ETR534203 Erythrocoma triflora partial gbssi-1 pseudogene, exons 1-9, clone 5-1 Length = 1874 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 37 caaagttaccctaatgatg 55 ||||||||||||||||||| Sbjct: 842 caaagttaccctaatgatg 860
>emb|AJ534200.1|GRI534200 Geum rivale partial gbssi-1 pseudogene, exons 1-9, clone 1-2 Length = 1868 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 37 caaagttaccctaatgatg 55 ||||||||||||||||||| Sbjct: 839 caaagttaccctaatgatg 857
>emb|AJ534194.1|GUR534194 Geum urbanum partial gbssi-1 pseudogene, exons 1-9, clone 1-2 Length = 1803 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 37 caaagttaccctaatgatg 55 ||||||||||||||||||| Sbjct: 771 caaagttaccctaatgatg 789
>emb|AJ534193.1|GUR534193 Geum urbanum partial gbssi-1 gene for granule-bound starch synthase, exons 1-9, clone 1-1 Length = 1867 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 37 caaagttaccctaatgatg 55 ||||||||||||||||||| Sbjct: 838 caaagttaccctaatgatg 856
>emb|AJ534192.1|GRI534192 Geum rivale partial gbssi-1 gene for granule-bound starch synthase, exons 1-9, clone 1-3 Length = 1803 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 37 caaagttaccctaatgatg 55 ||||||||||||||||||| Sbjct: 771 caaagttaccctaatgatg 789
>emb|AJ534191.1|GMO534191 Geum montanum partial gbssi-1 gene for granule-bound starch synthase, exons 1-9, clone 5-2 Length = 1856 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 37 caaagttaccctaatgatg 55 ||||||||||||||||||| Sbjct: 828 caaagttaccctaatgatg 846
>emb|AJ534189.1|ETR534189 Erythrocoma triflora partial gbssi-1 gene for granule-bound starch synthase, exons 1-9, clone 1-4 Length = 1790 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 37 caaagttaccctaatgatg 55 ||||||||||||||||||| Sbjct: 758 caaagttaccctaatgatg 776
>emb|AJ534188.1|GVE534188 Geum vernum partial gbssi-1 gene for granule-bound starch synthase, exons 1-9, clone 5-5 Length = 1877 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 37 caaagttaccctaatgatg 55 ||||||||||||||||||| Sbjct: 849 caaagttaccctaatgatg 867
>emb|AJ534185.1|GRE534185 Geum reptans partial gbssi-1 gene for granule-bound starch synthase, exons 1-9, clone 1-5 Length = 1855 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 37 caaagttaccctaatgatg 55 ||||||||||||||||||| Sbjct: 823 caaagttaccctaatgatg 841
>emb|AJ534183.1|CGE534183 Coluria geoides partial gbssi-1 gene for granule-bound starch synthase, exons 1-9, clone 5-2 Length = 1749 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 37 caaagttaccctaatgatg 55 ||||||||||||||||||| Sbjct: 715 caaagttaccctaatgatg 733
>emb|AJ871491.1| Oncostylus leiospermus partial gbss1-1 pseudogene, clone 2-2 Length = 1832 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 37 caaagttaccctaatgatg 55 ||||||||||||||||||| Sbjct: 804 caaagttaccctaatgatg 822
>emb|AJ871490.1| Oncostylus leiospermus partial gbss1-1 pseudogene, clone 1-3 Length = 1815 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 37 caaagttaccctaatgatg 55 ||||||||||||||||||| Sbjct: 827 caaagttaccctaatgatg 845
>emb|AJ871489.1| Oncostylus leiospermus partial gbss1-1 gene for granule bound starch synthase, exons 2-9, clone 1-6 Length = 1810 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 37 caaagttaccctaatgatg 55 ||||||||||||||||||| Sbjct: 780 caaagttaccctaatgatg 798
>emb|AJ871488.1| Novosieversia glacialis partial gbss1-1 pseudogene, exons 1-9 Length = 1847 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 37 caaagttaccctaatgatg 55 ||||||||||||||||||| Sbjct: 818 caaagttaccctaatgatg 836
>gb|AC003694.1|AC003694 Mus musculus chromosome 19, clone CIT282B21, complete sequence Length = 186314 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 56 aaacaaaagactaggtaga 74 ||||||||||||||||||| Sbjct: 36942 aaacaaaagactaggtaga 36960
>gb|AC149086.4| Mus musculus BAC clone RP24-245L1 from 19, complete sequence Length = 185283 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 56 aaacaaaagactaggtaga 74 ||||||||||||||||||| Sbjct: 81242 aaacaaaagactaggtaga 81224
>emb|AL929265.6| Mouse DNA sequence from clone RP23-316D8 on chromosome 2, complete sequence Length = 178882 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 19 tatgaaatataatagttcc 37 ||||||||||||||||||| Sbjct: 63830 tatgaaatataatagttcc 63812
>emb|AL772397.3| Mouse DNA sequence from clone RP23-95M14 on chromosome 4, complete sequence Length = 230672 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 6 agaaataataggatatgaa 24 ||||||||||||||||||| Sbjct: 19411 agaaataataggatatgaa 19393
>dbj|AP004287.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1471H7 Length = 172543 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 23 aaatataatagttccaaag 41 ||||||||||||||||||| Sbjct: 79594 aaatataatagttccaaag 79612 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,284,028 Number of Sequences: 3902068 Number of extensions: 1284028 Number of successful extensions: 98393 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 98181 Number of HSP's gapped (non-prelim): 212 length of query: 116 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 95 effective length of database: 17,151,101,840 effective search space: 1629354674800 effective search space used: 1629354674800 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)