ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl32f09 |
|---|---|
| Clone Library Name | barley_pub |
>AP1B1_MOUSE (O35643) AP-1 complex subunit beta-1 (Adapter-related protein complex| 1 beta-1 subunit) (Beta-adaptin 1) (Adaptor protein complex AP-1 beta-1 subunit) (Golgi adaptor HA1/AP1 adaptin beta subunit) (Clathrin assembly protein complex 1 beta larg Length = 943 Score = 41.2 bits (95), Expect = 0.001 Identities = 23/67 (34%), Positives = 35/67 (52%) Frame = -3 Query: 422 ASNVFFIAKRRNANMDVLYLSAKIPRGIPFLIELTAAVGAPGAKCAVKTPNREFVPLFFE 243 +SN+F +AKR D+LY S K+ GI L EL G P ++K E ++ Sbjct: 876 SSNIFTVAKRNVEGQDMLYQSLKLTNGIWVLAELRIQPGNPSFTLSLKCRAPEVSQHVYQ 935 Query: 242 AMESLIK 222 A E+++K Sbjct: 936 AYETILK 942
>AP2B1_RAT (P62944) AP-2 complex subunit beta-1 (Adapter-related protein complex| 2 beta-1 subunit) (Beta-adaptin) (Plasma membrane adaptor HA2/AP2 adaptin beta subunit) (Clathrin assembly protein complex 2 beta large chain) (AP105B) Length = 937 Score = 39.3 bits (90), Expect = 0.004 Identities = 22/66 (33%), Positives = 33/66 (50%) Frame = -3 Query: 419 SNVFFIAKRRNANMDVLYLSAKIPRGIPFLIELTAAVGAPGAKCAVKTPNREFVPLFFEA 240 +NV+ IAKR D+LY S K+ GI L EL G P ++K E ++ Sbjct: 871 NNVYTIAKRNVEGQDMLYQSLKLTNGIWILAELRIQPGNPNYTLSLKCRAPEVSQYIYQV 930 Query: 239 MESLIK 222 +S++K Sbjct: 931 YDSILK 936
>AP2B1_MOUSE (Q9DBG3) AP-2 complex subunit beta-1 (Adapter-related protein complex| 2 beta-1 subunit) (Beta-adaptin) (Plasma membrane adaptor HA2/AP2 adaptin beta subunit) (Clathrin assembly protein complex 2 beta large chain) (AP105B) Length = 937 Score = 39.3 bits (90), Expect = 0.004 Identities = 22/66 (33%), Positives = 33/66 (50%) Frame = -3 Query: 419 SNVFFIAKRRNANMDVLYLSAKIPRGIPFLIELTAAVGAPGAKCAVKTPNREFVPLFFEA 240 +NV+ IAKR D+LY S K+ GI L EL G P ++K E ++ Sbjct: 871 NNVYTIAKRNVEGQDMLYQSLKLTNGIWILAELRIQPGNPNYTLSLKCRAPEVSQYIYQV 930 Query: 239 MESLIK 222 +S++K Sbjct: 931 YDSILK 936
>AP2B1_HUMAN (P63010) AP-2 complex subunit beta-1 (Adapter-related protein complex| 2 beta-1 subunit) (Beta-adaptin) (Plasma membrane adaptor HA2/AP2 adaptin beta subunit) (Clathrin assembly protein complex 2 beta large chain) (AP105B) Length = 937 Score = 39.3 bits (90), Expect = 0.004 Identities = 22/66 (33%), Positives = 33/66 (50%) Frame = -3 Query: 419 SNVFFIAKRRNANMDVLYLSAKIPRGIPFLIELTAAVGAPGAKCAVKTPNREFVPLFFEA 240 +NV+ IAKR D+LY S K+ GI L EL G P ++K E ++ Sbjct: 871 NNVYTIAKRNVEGQDMLYQSLKLTNGIWILAELRIQPGNPNYTLSLKCRAPEVSQYIYQV 930 Query: 239 MESLIK 222 +S++K Sbjct: 931 YDSILK 936
>MLL3_HUMAN (Q8NEZ4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog| (Histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3) (EC 2.1.1.43) (Homologous to ALR protein) Length = 4911 Score = 39.3 bits (90), Expect = 0.004 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -2 Query: 360 CEDPPWDSIPDRAYCCRWCSWCKVCSEDS 274 C DPP ++P + C+WC WC+ C S Sbjct: 1036 CLDPPLQTVPKGGWKCKWCVWCRHCGATS 1064
>MLL3_MOUSE (Q8BRH4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog| (Histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3) (EC 2.1.1.43) Length = 4903 Score = 39.3 bits (90), Expect = 0.004 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -2 Query: 360 CEDPPWDSIPDRAYCCRWCSWCKVCSEDS 274 C DPP ++P + C+WC WC+ C S Sbjct: 1029 CLDPPLQTVPKGGWKCKWCVWCRHCGATS 1057
>AP1B1_RAT (P52303) AP-1 complex subunit beta-1 (Adapter-related protein complex| 1 beta-1 subunit) (Beta-adaptin 1) (Adaptor protein complex AP-1 beta-1 subunit) (Golgi adaptor HA1/AP1 adaptin beta subunit) (Clathrin assembly protein complex 1 beta large Length = 949 Score = 38.9 bits (89), Expect = 0.005 Identities = 23/67 (34%), Positives = 34/67 (50%) Frame = -3 Query: 422 ASNVFFIAKRRNANMDVLYLSAKIPRGIPFLIELTAAVGAPGAKCAVKTPNREFVPLFFE 243 +SN+F +AKR D+LY S K+ GI L EL G P ++K E + Sbjct: 882 SSNIFTVAKRTVEGQDMLYQSLKLTNGIWVLAELRIQPGNPSFTLSLKCRAPEVSQHDIQ 941 Query: 242 AMESLIK 222 A E+++K Sbjct: 942 AYETILK 948
>AP1B1_HUMAN (Q10567) AP-1 complex subunit beta-1 (Adapter-related protein complex| 1 beta-1 subunit) (Beta-adaptin 1) (Adaptor protein complex AP-1 beta-1 subunit) (Golgi adaptor HA1/AP1 adaptin beta subunit) (Clathrin assembly protein complex 1 beta larg Length = 949 Score = 37.4 bits (85), Expect = 0.015 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 3/70 (4%) Frame = -3 Query: 422 ASNVFFIAKRRNANMDVLYLSAKIPRGIPFLIELTAAVGAPGA---KCAVKTPNREFVPL 252 +SN+F +AKR D+LY S K+ GI L EL G P + ++K E Sbjct: 879 SSNIFTVAKRNVEGQDMLYQSLKLTNGIWVLAELRIQPGNPSCTDLELSLKCRAPEVSQH 938 Query: 251 FFEAMESLIK 222 ++A E+++K Sbjct: 939 VYQAYETILK 948
>MT2_CALSI (P55950) Metallothionein-2B (MT-2B) (Metallothionein-IIB) (MT-IIB)| [Contains: Metallothionein-2A (MT-2A) (Metallothionein-IIA) (MT-IIA)] Length = 58 Score = 35.0 bits (79), Expect = 0.074 Identities = 17/49 (34%), Positives = 21/49 (42%) Frame = -2 Query: 426 CSIKCVLYCQEEKCKYGCAVSVCEDPPWDSIPDRAYCCRWCSWCKVCSE 280 C+ KC C+E +CK GC C PP D C K CS+ Sbjct: 6 CNDKCE--CKEGECKTGCKCKSCRCPPCDKCSSECKCTSKEECSKTCSK 52
>MT2_SCYSE (P02806) Metallothionein-2 (MT-2) (Metallothionein-II) (MT-II)| Length = 57 Score = 32.7 bits (73), Expect = 0.37 Identities = 16/49 (32%), Positives = 22/49 (44%) Frame = -2 Query: 426 CSIKCVLYCQEEKCKYGCAVSVCEDPPWDSIPDRAYCCRWCSWCKVCSE 280 C+ KC C+E +CK GC + C PP + C K CS+ Sbjct: 5 CNDKCD--CKEGECKTGCKCTSCRCPPCEQCSSGCKCANKEDCRKTCSK 51
>MT1_SCYSE (P02805) Metallothionein-1 (MT-1) (Metallothionein-I) (MT-I)| Length = 58 Score = 32.0 bits (71), Expect = 0.62 Identities = 16/49 (32%), Positives = 21/49 (42%) Frame = -2 Query: 426 CSIKCVLYCQEEKCKYGCAVSVCEDPPWDSIPDRAYCCRWCSWCKVCSE 280 C+ KCV C+E CK GC + C P + C K CS+ Sbjct: 5 CNDKCV--CKEGGCKEGCQCTSCRCSPCEKCSSGCKCANKEECSKTCSK 51
>MT1_CALSI (P55949) Metallothionein-1B (MT-1B) (Metallothionein-IB) (MT-IB)| [Contains: Metallothionein-1A (MT-1A) (Metallothionein-IA) (MT-IA)] Length = 59 Score = 32.0 bits (71), Expect = 0.62 Identities = 18/56 (32%), Positives = 24/56 (42%) Frame = -2 Query: 426 CSIKCVLYCQEEKCKYGCAVSVCEDPPWDSIPDRAYCCRWCSWCKVCSEDSKQGVC 259 C+ KCV CQE CK GC + C P C + S CK +++ C Sbjct: 6 CNDKCV--CQEGGCKAGCQCTSCRCSP---------CQKCTSGCKCATKEECSKTC 50
>MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia protein 2| (ALL1-related protein) Length = 5262 Score = 31.2 bits (69), Expect = 1.1 Identities = 11/29 (37%), Positives = 15/29 (51%) Frame = -2 Query: 360 CEDPPWDSIPDRAYCCRWCSWCKVCSEDS 274 C DPP ++P + C+WC C C S Sbjct: 1181 CLDPPLLTVPKGGWKCKWCVSCMQCGAAS 1209
>KRA54_HUMAN (Q6L8H1) Keratin-associated protein 5-4 (Keratin-associated protein| 5.4) (Ultrahigh sulfur keratin-associated protein 5.4) Length = 288 Score = 30.8 bits (68), Expect = 1.4 Identities = 19/54 (35%), Positives = 22/54 (40%) Frame = -2 Query: 426 CSIKCVLYCQEEKCKYGCAVSVCEDPPWDSIPDRAYCCRWCSWCKVCSEDSKQG 265 C C CQ CK C+ S C S + YCC+ S CK C S G Sbjct: 211 CGSSC---CQSSCCKPCCSSSGCGSSCCQSSCCKPYCCQ-SSCCKPCCSSSGCG 260
>KR104_HUMAN (P60372) Keratin-associated protein 10-4 (Keratin-associated| protein 10.4) (High sulfur keratin-associated protein 10.4) (Keratin-associated protein 18-4) (Keratin-associated protein 18.4) Length = 401 Score = 30.4 bits (67), Expect = 1.8 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 10/61 (16%) Frame = -2 Query: 402 CQEEKCKYGCAVSVCEDP----PWDSIP----DRAYCCRWCSWCKVC--SEDSKQGVCAS 253 C C+ C V VC P P S+P + CC+ S C S S+QG C Sbjct: 261 CTSSPCQQACCVPVCCKPVCCKPVGSVPICSGASSLCCQQSSCQPACCTSSQSQQGCCVP 320 Query: 252 I 250 + Sbjct: 321 V 321
>MT_CARMA (P55948) Metallothionein (MT)| Length = 58 Score = 30.4 bits (67), Expect = 1.8 Identities = 15/49 (30%), Positives = 20/49 (40%) Frame = -2 Query: 426 CSIKCVLYCQEEKCKYGCAVSVCEDPPWDSIPDRAYCCRWCSWCKVCSE 280 C KC C+E CK GC + C P + C CK C++ Sbjct: 6 CIDKCE--CKEGGCKAGCKCTSCRCTPCEKCSSGCKCTTKEDCCKTCTK 52
>ZNHI2_HUMAN (Q9UHR6) Zinc finger HIT domain-containing protein 2 (Protein FON)| Length = 403 Score = 29.6 bits (65), Expect = 3.1 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%) Frame = -3 Query: 260 VPLFFEAMESLIK*-VTGNLRMDIPSKLFSYEHTAVLFHG 144 VP A+ SL + V+ +R +P+ LF+Y HT L+HG Sbjct: 192 VPTRIPAIVSLSRGPVSPLVRFQLPNVLFAYAHTLALYHG 231
>ZNHI2_MOUSE (Q9QY66) Zinc finger HIT domain-containing protein 2 (Protein FON)| Length = 399 Score = 29.3 bits (64), Expect = 4.0 Identities = 10/21 (47%), Positives = 15/21 (71%) Frame = -3 Query: 206 LRMDIPSKLFSYEHTAVLFHG 144 +R +P+ LF+Y HT L+HG Sbjct: 206 VRFQLPNVLFAYAHTLALYHG 226
>PXDC2_XENLA (Q6DE92) Plexin domain-containing protein 2 precursor| Length = 513 Score = 28.9 bits (63), Expect = 5.3 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 19/51 (37%) Frame = -2 Query: 306 CSWCKV-------------------CSEDSKQGVCASIL*SYGVSYQVSDG 211 CSWC + C+E+SK VC +L + G+S+ + G Sbjct: 331 CSWCNIPQRCSSGFDRHRQDWVENGCTEESKDTVCDDLLQTTGISHHTTTG 381
>KR107_HUMAN (P60409) Keratin-associated protein 10-7 (Keratin-associated| protein 10.7) (High sulfur keratin-associated protein 10.7) (Keratin-associated protein 18-7) (Keratin-associated protein 18.7) Length = 370 Score = 28.9 bits (63), Expect = 5.3 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 4/62 (6%) Frame = -2 Query: 426 CSIKCVLYCQEEKCKYGC-AVSVCEDPPWDSIPDRAYCCRWCSWCKVCSEDS---KQGVC 259 C+ C CQ+ C+ C A S C+ + + CC+ VCS DS +Q C Sbjct: 85 CTPSC---CQQSSCQLACCASSPCQQACCVPVCCKTVCCKPVYCVPVCSGDSSCCQQSSC 141 Query: 258 AS 253 S Sbjct: 142 QS 143
>POU1_BRARE (P31366) POU domain protein 1 (ZFPOU1)| Length = 425 Score = 28.5 bits (62), Expect = 6.9 Identities = 20/57 (35%), Positives = 24/57 (42%) Frame = +2 Query: 200 SLSYPSLT**ETP*LQRIEAQTPCLESSLHTLHQEHQRQQ*ALSGMESHGGSSQTDT 370 SL +P L +TP L S H H +HQ Q A G+ SH S DT Sbjct: 192 SLVHPGLVRGDTPELDH--------SSHHHHHHHQHQHHQQAHHGVNSHDPHSDEDT 240
>POU23_BRARE (P79745) POU domain protein ZP-23| Length = 443 Score = 28.5 bits (62), Expect = 6.9 Identities = 20/57 (35%), Positives = 24/57 (42%) Frame = +2 Query: 200 SLSYPSLT**ETP*LQRIEAQTPCLESSLHTLHQEHQRQQ*ALSGMESHGGSSQTDT 370 SL +P L +TP L S H H +HQ Q A G+ SH S DT Sbjct: 192 SLVHPGLVRGDTPELDH--------SSHHHHHHHQHQHHQQAHHGVNSHDPHSDEDT 240
>KRA58_HUMAN (O75690) Keratin-associated protein 5-8 (Keratin-associated protein| 5.8) (Ultrahigh sulfur keratin-associated protein 5.8) (Keratin, ultra high-sulfur matrix protein B) (UHS keratin B) (UHS KerB) Length = 187 Score = 28.5 bits (62), Expect = 6.9 Identities = 12/48 (25%), Positives = 17/48 (35%) Frame = -2 Query: 402 CQEEKCKYGCAVSVCEDPPWDSIPDRAYCCRWCSWCKVCSEDSKQGVC 259 C+ C GC S C+ ++ CC+ C C Q C Sbjct: 120 CKPCSCSSGCGSSCCQSSCCKPCCSQSSCCKPCCCSSGCGSSCCQSSC 167 Score = 28.5 bits (62), Expect = 6.9 Identities = 12/43 (27%), Positives = 16/43 (37%) Frame = -2 Query: 387 CKYGCAVSVCEDPPWDSIPDRAYCCRWCSWCKVCSEDSKQGVC 259 C GC S C+ ++ CC+ CS C Q C Sbjct: 96 CSSGCGSSCCQSSCCKPCCSQSSCCKPCSCSSGCGSSCCQSSC 138
>TRGS_TACTR (P81281) 8.6 kDa transglutaminase substrate| Length = 81 Score = 28.5 bits (62), Expect = 6.9 Identities = 11/35 (31%), Positives = 15/35 (42%) Frame = -2 Query: 387 CKYGCAVSVCEDPPWDSIPDRAYCCRWCSWCKVCS 283 C GC S C D + A C+ C +C C+ Sbjct: 6 CSVGCDTSYCPDTSSCNCGTFADYCKCCQYCNACA 40
>MT_POTPO (P55952) Metallothionein (MT)| Length = 58 Score = 28.5 bits (62), Expect = 6.9 Identities = 11/37 (29%), Positives = 15/37 (40%) Frame = -2 Query: 426 CSIKCVLYCQEEKCKYGCAVSVCEDPPWDSIPDRAYC 316 C + C+E KCK GC + C P + C Sbjct: 4 CCAEGTCECEEGKCKAGCKCTSCRCSPCEKCTSECEC 40
>MT1_HOMAM (P29499) Metallothionein-1 (CuMT-1)| Length = 58 Score = 28.5 bits (62), Expect = 6.9 Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 6/54 (11%) Frame = -2 Query: 426 CSIKCVLYCQEEKCKYGCAVSVCEDPPWD------SIPDRAYCCRWCSWCKVCS 283 C KC C E CK GC + C P + P + C + CS K CS Sbjct: 5 CKDKCE--CAEGGCKTGCKCTSCRCAPCEKCTSGCKCPSKDECAKTCS--KPCS 54
>KR106_HUMAN (P60371) Keratin-associated protein 10-6 (Keratin-associated| protein 10.6) (High sulfur keratin-associated protein 10.6) (Keratin-associated protein 18-6) (Keratin-associated protein 18.6) Length = 365 Score = 28.1 bits (61), Expect = 9.0 Identities = 17/56 (30%), Positives = 20/56 (35%) Frame = -2 Query: 426 CSIKCVLYCQEEKCKYGCAVSVCEDPPWDSIPDRAYCCRWCSWCKVCSEDSKQGVC 259 C C C C+ C V VC P I + CC+ S S Q VC Sbjct: 141 CQSAC---CTSSPCQQACCVPVCCKPVCSGI--SSSCCQQSSCVSCVSSPCCQAVC 191
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 28.1 bits (61), Expect = 9.0 Identities = 10/23 (43%), Positives = 16/23 (69%) Frame = -3 Query: 365 LSAKIPRGIPFLIELTAAVGAPG 297 + A +P G+P +++ AAVG PG Sbjct: 246 MQASMPGGVPAPVQMAAAVGGPG 268
>TRAF1_HUMAN (Q13077) TNF receptor-associated factor 1 (Epstein-Barr| virus-induced protein 6) Length = 416 Score = 28.1 bits (61), Expect = 9.0 Identities = 12/31 (38%), Positives = 16/31 (51%) Frame = -2 Query: 396 EEKCKYGCAVSVCEDPPWDSIPDRAYCCRWC 304 E + +GC +VC+DP RA CC C Sbjct: 15 ENEFPFGCPPTVCQDPK----EPRALCCAGC 41
>MUKB_MANSM (Q65TL9) Chromosome partition protein mukB (Structural maintenance| of chromosome-related protein) Length = 1499 Score = 28.1 bits (61), Expect = 9.0 Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 1/29 (3%) Frame = +2 Query: 245 QRIEAQ-TPCLESSLHTLHQEHQRQQ*AL 328 Q+++AQ TP L + LH L Q +Q+QQ A+ Sbjct: 537 QKLQAQQTPQLRAKLHELEQRYQQQQSAV 565
>MPAA5_AMBEL (P02878) Pollen allergen Amb a 5 (Amb a V) (Allergen Ra5)| Length = 45 Score = 28.1 bits (61), Expect = 9.0 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 4/23 (17%) Frame = -2 Query: 327 RAYCC----RWCSWCKVCSEDSK 271 RAYCC R+C W VC E S+ Sbjct: 15 RAYCCSDPGRYCPWQVVCYESSE 37
>MPA5A_AMBPS (P43174) Pollen allergen Amb p 5a precursor (Amb p Va)| Length = 77 Score = 28.1 bits (61), Expect = 9.0 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 4/23 (17%) Frame = -2 Query: 327 RAYCC----RWCSWCKVCSEDSK 271 RAYCC R+C W VC E S+ Sbjct: 37 RAYCCSDPGRYCPWQVVCYESSE 59
>YFC3_SCHPO (O14138) Hypothetical protein C25A8.03c in chromosome I| Length = 467 Score = 28.1 bits (61), Expect = 9.0 Identities = 18/44 (40%), Positives = 22/44 (50%) Frame = -1 Query: 163 QLCCFMEVSVNCIVLLLCYFYFTVFKLLVSWFQNFLGILILDIL 32 Q F E N +VL YF VF L + F + GI+ LDIL Sbjct: 126 QRSLFSESISNYLVLQYKLRYFPVFDLKIYDFHSGTGIIALDIL 169
>ANTA_HAEGH (P16242) Ghilanten| Length = 119 Score = 28.1 bits (61), Expect = 9.0 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 2/37 (5%) Frame = -2 Query: 420 IKCVLYCQE--EKCKYGCAVSVCEDPPWDSIPDRAYC 316 ++C +YC ++ +YGC V C P + D + C Sbjct: 31 VRCRVYCSHGFQRSRYGCEVCRCRTEPMKATCDISEC 67 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,204,384 Number of Sequences: 219361 Number of extensions: 1226744 Number of successful extensions: 3721 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 3547 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3707 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2336739400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
