ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl32f09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009089.1| Triticum aestivum clone wkm2c.pk0002.a3:fis, full insert mRNA sequence Length = 774 Score = 563 bits (284), Expect = e-157 Identities = 388/421 (92%), Gaps = 5/421 (1%) Strand = Plus / Minus Query: 12 gatatacaatttatgcggcacaaaatgtccaggatgagtatccctaga---aaattctga 68 ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct: 695 gatatacaatttatgcggcacaaaatgtccaggttgagtatccctagaggaaaattctga 636 Query: 69 aaccaagaaactaacagcttaaatacggtaaagtagaagtaacacaataacaacacaata 128 ||||||||||||||||| ||||||||||| | || ||| | ||||||||||||||||| Sbjct: 635 aaccaagaaactaacagtttaaatacggtgatctaatagttatacaataacaacacaata 576 Query: 129 caattcacactaacttccatgaaacagcacagctgt--atgctcataactgaataatttt 186 ||||||||||||||||||||| |||||||| |||| ||||||||||| |||||||||| Sbjct: 575 caattcacactaacttccatggaacagcacgcctgtgtatgctcataaccgaataatttt 516 Query: 187 gacggaatatccatccttaagttacccgtcacttacttgataagagactccatagcttca 246 ||||||||| | ||| | ||||| ||||||||||| |||||||||||||||||||||||| Sbjct: 515 gacggaataccgatcttcaagtttcccgtcacttaattgataagagactccatagcttca 456 Query: 247 aagaatagaggcacaaactccctgtttggagtcttcactgcacactttgcaccaggagca 306 ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| || Sbjct: 455 aagaatagaggcacaaactccctgtttggagtcttgactgcacacttggcaccaggaaca 396 Query: 307 ccaacggcagcagtaagctctatcaggaatggaatcccacgggggatcttcgcagacaga 366 ||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||| Sbjct: 395 ccaacagcagcagtaagctctatcagaaatggaatcccacgggggaccttcgcagacaga 336 Query: 367 tacagcacatccatatttgcatttctcctcttggcaataaagaacacatttgatgctgca 426 |||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct: 335 tacagcacatccatgtttgcatttttccgcttggcaataaagaacacatttgatgctgca 276 Query: 427 a 427 | Sbjct: 275 a 275
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 157 bits (79), Expect = 4e-35 Identities = 175/207 (84%) Strand = Plus / Plus Query: 221 acttgataagagactccatagcttcaaagaatagaggcacaaactccctgtttggagtct 280 |||||| |||||||||||| ||||| ||||| |||| ||| | |||| |||||||||| | Sbjct: 13561552 acttgagaagagactccatggcttcgaagaagagagccaccatctccttgtttggagttt 13561611 Query: 281 tcactgcacactttgcaccaggagcaccaacggcagcagtaagctctatcaggaatggaa 340 | || |||||||| | |||||| |||| || ||||||||||||||||||||||| || | Sbjct: 13561612 tgaccgcacacttcacgccaggaacaccgactgcagcagtaagctctatcaggaagggga 13561671 Query: 341 tcccacgggggatcttcgcagacagatacagcacatccatatttgcatttctcctcttgg 400 | ||||| || ||||| ||||||| ||||| |||||| | |||| ||| ||||||||| Sbjct: 13561672 ttccacgcggaatctttgcagacatgtacagaacatccttgtttgagtttttcctcttgg 13561731 Query: 401 caataaagaacacatttgatgctgcaa 427 | ||||||||||||||||||||||||| Sbjct: 13561732 cgataaagaacacatttgatgctgcaa 13561758
>gb|AC137073.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0005A11, from chromosome 3, complete sequence Length = 168219 Score = 157 bits (79), Expect = 4e-35 Identities = 175/207 (84%) Strand = Plus / Plus Query: 221 acttgataagagactccatagcttcaaagaatagaggcacaaactccctgtttggagtct 280 |||||| |||||||||||| ||||| ||||| |||| ||| | |||| |||||||||| | Sbjct: 121443 acttgagaagagactccatggcttcgaagaagagagccaccatctccttgtttggagttt 121502 Query: 281 tcactgcacactttgcaccaggagcaccaacggcagcagtaagctctatcaggaatggaa 340 | || |||||||| | |||||| |||| || ||||||||||||||||||||||| || | Sbjct: 121503 tgaccgcacacttcacgccaggaacaccgactgcagcagtaagctctatcaggaagggga 121562 Query: 341 tcccacgggggatcttcgcagacagatacagcacatccatatttgcatttctcctcttgg 400 | ||||| || ||||| ||||||| ||||| |||||| | |||| ||| ||||||||| Sbjct: 121563 ttccacgcggaatctttgcagacatgtacagaacatccttgtttgagtttttcctcttgg 121622 Query: 401 caataaagaacacatttgatgctgcaa 427 | ||||||||||||||||||||||||| Sbjct: 121623 cgataaagaacacatttgatgctgcaa 121649
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 157 bits (79), Expect = 4e-35 Identities = 175/207 (84%) Strand = Plus / Plus Query: 221 acttgataagagactccatagcttcaaagaatagaggcacaaactccctgtttggagtct 280 |||||| |||||||||||| ||||| ||||| |||| ||| | |||| |||||||||| | Sbjct: 13557427 acttgagaagagactccatggcttcgaagaagagagccaccatctccttgtttggagttt 13557486 Query: 281 tcactgcacactttgcaccaggagcaccaacggcagcagtaagctctatcaggaatggaa 340 | || |||||||| | |||||| |||| || ||||||||||||||||||||||| || | Sbjct: 13557487 tgaccgcacacttcacgccaggaacaccgactgcagcagtaagctctatcaggaagggga 13557546 Query: 341 tcccacgggggatcttcgcagacagatacagcacatccatatttgcatttctcctcttgg 400 | ||||| || ||||| ||||||| ||||| |||||| | |||| ||| ||||||||| Sbjct: 13557547 ttccacgcggaatctttgcagacatgtacagaacatccttgtttgagtttttcctcttgg 13557606 Query: 401 caataaagaacacatttgatgctgcaa 427 | ||||||||||||||||||||||||| Sbjct: 13557607 cgataaagaacacatttgatgctgcaa 13557633
>dbj|AK071247.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023087B10, full insert sequence Length = 1904 Score = 157 bits (79), Expect = 4e-35 Identities = 175/207 (84%) Strand = Plus / Minus Query: 221 acttgataagagactccatagcttcaaagaatagaggcacaaactccctgtttggagtct 280 |||||| |||||||||||| ||||| ||||| |||| ||| | |||| |||||||||| | Sbjct: 1728 acttgagaagagactccatggcttcgaagaagagagccaccatctccttgtttggagttt 1669 Query: 281 tcactgcacactttgcaccaggagcaccaacggcagcagtaagctctatcaggaatggaa 340 | || |||||||| | |||||| |||| || ||||||||||||||||||||||| || | Sbjct: 1668 tgaccgcacacttcacgccaggaacaccgactgcagcagtaagctctatcaggaagggga 1609 Query: 341 tcccacgggggatcttcgcagacagatacagcacatccatatttgcatttctcctcttgg 400 | ||||| || ||||| ||||||| ||||| |||||| | |||| ||| ||||||||| Sbjct: 1608 ttccacgcggaatctttgcagacatgtacagaacatccttgtttgagtttttcctcttgg 1549 Query: 401 caataaagaacacatttgatgctgcaa 427 | ||||||||||||||||||||||||| Sbjct: 1548 cgataaagaacacatttgatgctgcaa 1522
>dbj|AK069084.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007F10, full insert sequence Length = 1842 Score = 157 bits (79), Expect = 4e-35 Identities = 175/207 (84%) Strand = Plus / Minus Query: 221 acttgataagagactccatagcttcaaagaatagaggcacaaactccctgtttggagtct 280 |||||| |||||||||||| ||||| ||||| |||| ||| | |||| |||||||||| | Sbjct: 1479 acttgagaagagactccatggcttcgaagaagagagccaccatctccttgtttggagttt 1420 Query: 281 tcactgcacactttgcaccaggagcaccaacggcagcagtaagctctatcaggaatggaa 340 | || |||||||| | |||||| |||| || ||||||||||||||||||||||| || | Sbjct: 1419 tgaccgcacacttcacgccaggaacaccgactgcagcagtaagctctatcaggaagggga 1360 Query: 341 tcccacgggggatcttcgcagacagatacagcacatccatatttgcatttctcctcttgg 400 | ||||| || ||||| ||||||| ||||| |||||| | |||| ||| ||||||||| Sbjct: 1359 ttccacgcggaatctttgcagacatgtacagaacatccttgtttgagtttttcctcttgg 1300 Query: 401 caataaagaacacatttgatgctgcaa 427 | ||||||||||||||||||||||||| Sbjct: 1299 cgataaagaacacatttgatgctgcaa 1273
>dbj|AK059077.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-A07, full insert sequence Length = 834 Score = 157 bits (79), Expect = 4e-35 Identities = 175/207 (84%) Strand = Plus / Minus Query: 221 acttgataagagactccatagcttcaaagaatagaggcacaaactccctgtttggagtct 280 |||||| |||||||||||| ||||| ||||| |||| ||| | |||| |||||||||| | Sbjct: 546 acttgagaagagactccatggcttcgaagaagagagccaccatctccttgtttggagttt 487 Query: 281 tcactgcacactttgcaccaggagcaccaacggcagcagtaagctctatcaggaatggaa 340 | || |||||||| | |||||| |||| || ||||||||||||||||||||||| || | Sbjct: 486 tgaccgcacacttcacgccaggaacaccgactgcagcagtaagctctatcaggaagggga 427 Query: 341 tcccacgggggatcttcgcagacagatacagcacatccatatttgcatttctcctcttgg 400 | ||||| || ||||| ||||||| ||||| |||||| | |||| ||| ||||||||| Sbjct: 426 ttccacgcggaatctttgcagacatgtacagaacatccttgtttgagtttttcctcttgg 367 Query: 401 caataaagaacacatttgatgctgcaa 427 | ||||||||||||||||||||||||| Sbjct: 366 cgataaagaacacatttgatgctgcaa 340
>dbj|AK068938.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169D19, full insert sequence Length = 2979 Score = 151 bits (76), Expect = 2e-33 Identities = 169/200 (84%) Strand = Plus / Minus Query: 228 aagagactccatagcttcaaagaatagaggcacaaactccctgtttggagtcttcactgc 287 |||||||||||| ||||| ||||| |||| ||| | |||| |||||||||| || || || Sbjct: 2706 aagagactccatggcttcgaagaagagagccaccatctccttgtttggagttttgaccgc 2647 Query: 288 acactttgcaccaggagcaccaacggcagcagtaagctctatcaggaatggaatcccacg 347 |||||| | |||||| |||| || ||||||||||||||||||||||| || || ||||| Sbjct: 2646 acacttcacgccaggaacaccgactgcagcagtaagctctatcaggaaggggattccacg 2587 Query: 348 ggggatcttcgcagacagatacagcacatccatatttgcatttctcctcttggcaataaa 407 || ||||| ||||||| ||||| |||||| | |||| ||| |||||||||| ||||| Sbjct: 2586 cggaatctttgcagacatgtacagaacatccttgtttgagtttttcctcttggcgataaa 2527 Query: 408 gaacacatttgatgctgcaa 427 |||||||||||||||||||| Sbjct: 2526 gaacacatttgatgctgcaa 2507
>gb|AY109428.1| Zea mays CL501_1 mRNA sequence Length = 3187 Score = 135 bits (68), Expect = 1e-28 Identities = 162/195 (83%) Strand = Plus / Plus Query: 229 agagactccatagcttcaaagaatagaggcacaaactccctgtttggagtcttcactgca 288 |||| |||||||||||||||||| ||||| || | |||||| ||||| || || |||||| Sbjct: 356 agagcctccatagcttcaaagaagagaggaaccatctccctatttggtgttttgactgca 415 Query: 289 cactttgcaccaggagcaccaacggcagcagtaagctctatcaggaatggaatcccacgg 348 ||||| |||||||| ||||||| ||||| |||| |||||| ||||| || || |||||| Sbjct: 416 cacttcacaccaggaacaccaaccgcagctgtaacctctataaggaaggggattccacgg 475 Query: 349 gggatcttcgcagacagatacagcacatccatatttgcatttctcctcttggcaataaag 408 || |||||||| || |||||||| |||||||| || ||| || |||||| || ||| Sbjct: 476 ggcatcttcgcggagagatacagaacatccatgttcgcannnnnccgcttggctatgaag 535 Query: 409 aacacatttgatgct 423 ||||||||||||||| Sbjct: 536 aacacatttgatgct 550
>gb|AC073133.9| Homo sapiens BAC clone RP11-691F21 from 7, complete sequence Length = 95280 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 168 ctcataactgaataattttgac 189 |||||||||||||||||||||| Sbjct: 57533 ctcataactgaataattttgac 57512
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 aaatgtccaggatgagtatccc 55 |||||||||||||||||||||| Sbjct: 7266918 aaatgtccaggatgagtatccc 7266897
>dbj|AP004736.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0062A09 Length = 173541 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 aaatgtccaggatgagtatccc 55 |||||||||||||||||||||| Sbjct: 881 aaatgtccaggatgagtatccc 860
>dbj|AP004011.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1381_H04 Length = 130961 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 aaatgtccaggatgagtatccc 55 |||||||||||||||||||||| Sbjct: 119023 aaatgtccaggatgagtatccc 119002
>emb|AL161554.2|ATCHRIV54 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 54 Length = 198715 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 115 ataacaacacaatacaattca 135 ||||||||||||||||||||| Sbjct: 188407 ataacaacacaatacaattca 188427
>emb|AL031187.1|ATT6K22 Arabidopsis thaliana DNA chromosome 4, BAC clone T6K22 (ESSAII project) Length = 89219 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 115 ataacaacacaatacaattca 135 ||||||||||||||||||||| Sbjct: 45130 ataacaacacaatacaattca 45150
>ref|NM_202601.1| Arabidopsis thaliana unknown protein AT3G17860 transcript variant AT3G17860.2 mRNA, complete cds Length = 1370 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 cacatccatatttgcatttc 391 |||||||||||||||||||| Sbjct: 1087 cacatccatatttgcatttc 1106
>ref|NM_112667.2| Arabidopsis thaliana unknown protein AT3G17860 transcript variant AT3G17860.1 mRNA, complete cds Length = 1580 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 cacatccatatttgcatttc 391 |||||||||||||||||||| Sbjct: 1297 cacatccatatttgcatttc 1316
>gb|AC158787.14| Mus musculus chromosome 15, clone RP23-136G8, complete sequence Length = 203772 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 382 tttgcatttctcctcttggc 401 |||||||||||||||||||| Sbjct: 793 tttgcatttctcctcttggc 774
>gb|AC145791.2| Xenopus tropicalis clone CH216-136M10, complete sequence Length = 138176 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 369 cagcacatccatatttgcat 388 |||||||||||||||||||| Sbjct: 116229 cagcacatccatatttgcat 116248
>gb|AC127314.4| Mus musculus BAC clone RP23-217N4 from chromosome 18, complete sequence Length = 232320 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 aataacaacacaatacaatt 133 |||||||||||||||||||| Sbjct: 151220 aataacaacacaatacaatt 151239
>gb|AC129179.3| Mus musculus BAC clone RP23-240C24 from chromosome 18, complete sequence Length = 208462 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 aataacaacacaatacaatt 133 |||||||||||||||||||| Sbjct: 196667 aataacaacacaatacaatt 196648
>emb|Z70306.1|CEC06G8 Caenorhabditis elegans Cosmid C06G8, complete sequence Length = 31143 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 aattctgaaaccaagaaact 80 |||||||||||||||||||| Sbjct: 26630 aattctgaaaccaagaaact 26611
>gb|AC002487.1| Homo sapiens BAC clone CTA-369K23 from 7, complete sequence Length = 181588 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 368 acagcacatccatatttgcatttc 391 ||||||||| |||||||||||||| Sbjct: 135647 acagcacatacatatttgcatttc 135624
>emb|CR381641.12| Zebrafish DNA sequence from clone DKEY-189N10 in linkage group 7, complete sequence Length = 168455 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 tagaagtaacacaataacaa 121 |||||||||||||||||||| Sbjct: 80485 tagaagtaacacaataacaa 80504
>emb|AL078462.9|HSJ159G19 Human DNA sequence from clone RP1-159G19 on chromosome 6q14.1-14.3 Contains the 3' part of a novel gene, complete sequence Length = 88509 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 105 aagtaacacaataacaacacaata 128 |||||||||||||| ||||||||| Sbjct: 22962 aagtaacacaataataacacaata 22939
>gb|AF517750.1| Mus musculus chromosome 18 NFS107 proviral integration site Length = 1655 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 aataacaacacaatacaatt 133 |||||||||||||||||||| Sbjct: 52 aataacaacacaatacaatt 71
>gb|AC068951.18| Oryza sativa chromosome 10 BAC OSJNBa0042E19 genomic sequence, complete sequence Length = 149978 Score = 40.1 bits (20), Expect = 5.7 Identities = 32/36 (88%) Strand = Plus / Minus Query: 221 acttgataagagactccatagcttcaaagaatagag 256 |||||| |||||||||||| ||||| ||||| |||| Sbjct: 109697 acttgagaagagactccatggcttcgaagaagagag 109662
>emb|BX324007.16| Zebrafish DNA sequence from clone CH211-233C16 in linkage group 16, complete sequence Length = 165294 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 gtaaagtagaagtaacacaa 115 |||||||||||||||||||| Sbjct: 116674 gtaaagtagaagtaacacaa 116693
>gb|AC079439.26| Mus musculus strain 129/Sv chromosome 2 clone ct7-295g23, complete sequence Length = 115747 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 ttccatgaaacagcacagct 162 |||||||||||||||||||| Sbjct: 33060 ttccatgaaacagcacagct 33041
>gb|AC069540.6| Homo sapiens chromosome 10 clone RP11-344L13, complete sequence Length = 201182 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 393 cctcttggcaataaagaaca 412 |||||||||||||||||||| Sbjct: 169002 cctcttggcaataaagaaca 168983
>dbj|AK136716.1| Mus musculus adult male epididymis cDNA, RIKEN full-length enriched library, clone:9230028P05 product:unclassifiable, full insert sequence Length = 1057 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 ttccatgaaacagcacagct 162 |||||||||||||||||||| Sbjct: 543 ttccatgaaacagcacagct 562
>dbj|AK135406.1| Mus musculus 12 days embryo female mullerian duct includes surrounding region cDNA, RIKEN full-length enriched library, clone:6820415M06 product:Rap guanine nucleotide exchange factor (GEF) 3, full insert sequence Length = 3684 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 382 tttgcatttctcctcttggc 401 |||||||||||||||||||| Sbjct: 630 tttgcatttctcctcttggc 611
>dbj|AK222169.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL23-30-L21 Length = 1307 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 cacatccatatttgcatttc 391 |||||||||||||||||||| Sbjct: 1016 cacatccatatttgcatttc 1035
>gb|AC120670.8| Rattus norvegicus 2 BAC CH230-23N23 (Children's Hospital Oakland Research Institute) complete sequence Length = 228097 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 ctagaaaattctgaaaccaa 74 |||||||||||||||||||| Sbjct: 16993 ctagaaaattctgaaaccaa 17012
>gb|AC154501.2| Mus musculus BAC clone RP24-87F14 from chromosome 14, complete sequence Length = 215658 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 112 acaataacaacacaatacaattca 135 |||||||||||| ||||||||||| Sbjct: 47726 acaataacaacaaaatacaattca 47749
>gb|AF372907.1|AF372907 Arabidopsis thaliana AT3g17860/MEB5_8 mRNA, complete cds Length = 1578 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 cacatccatatttgcatttc 391 |||||||||||||||||||| Sbjct: 1297 cacatccatatttgcatttc 1316
>gb|AF298202.1| Dictyostelium discoideum putative transposon DDT-B, complete sequence Length = 5471 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 aacacaataacaacacaata 128 |||||||||||||||||||| Sbjct: 797 aacacaataacaacacaata 778 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 aacacaataacaacacaata 128 |||||||||||||||||||| Sbjct: 752 aacacaataacaacacaata 733
>tpg|BK001437.1| TPA: TPA_exp: Homo sapiens SULT6B1 (SULT6B1) gene, complete cds; alternatively spliced Length = 34001 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 atgctcataactgaataatt 184 |||||||||||||||||||| Sbjct: 22591 atgctcataactgaataatt 22610
>gb|AC017067.4|AC017067 Homo sapiens BAC clone RP11-370B11 from 9, complete sequence Length = 191373 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 aaaattctgaaaccaagaaa 78 |||||||||||||||||||| Sbjct: 33949 aaaattctgaaaccaagaaa 33968
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 5.7 Identities = 32/36 (88%) Strand = Plus / Minus Query: 221 acttgataagagactccatagcttcaaagaatagag 256 |||||| |||||||||||| ||||| ||||| |||| Sbjct: 16491598 acttgagaagagactccatggcttcgaagaagagag 16491563
>emb|BX822774.1|CNS0A63D Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB63ZE05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 976 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 cacatccatatttgcatttc 391 |||||||||||||||||||| Sbjct: 812 cacatccatatttgcatttc 831
>emb|BX822297.1|CNS0A611 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB27ZB09 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1436 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 cacatccatatttgcatttc 391 |||||||||||||||||||| Sbjct: 1193 cacatccatatttgcatttc 1212
>emb|BX824913.1|CNS0A5NW Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH82ZB08 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1327 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 cacatccatatttgcatttc 391 |||||||||||||||||||| Sbjct: 1087 cacatccatatttgcatttc 1106
>emb|BX824776.1|CNS0A5NG Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH71ZB02 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1454 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 cacatccatatttgcatttc 391 |||||||||||||||||||| Sbjct: 1228 cacatccatatttgcatttc 1247
>emb|BX822695.1|CNS0A5WD Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB58ZG10 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1475 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 cacatccatatttgcatttc 391 |||||||||||||||||||| Sbjct: 1226 cacatccatatttgcatttc 1245
>emb|BX824527.1|CNS0A4QA Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH54ZC12 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1492 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 cacatccatatttgcatttc 391 |||||||||||||||||||| Sbjct: 1238 cacatccatatttgcatttc 1257
>gb|AC007899.3| Homo sapiens BAC clone RP11-531C11 from 2, complete sequence Length = 118195 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 atgctcataactgaataatt 184 |||||||||||||||||||| Sbjct: 13587 atgctcataactgaataatt 13606
>gb|AY085082.1| Arabidopsis thaliana clone 12707 mRNA, complete sequence Length = 1535 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 cacatccatatttgcatttc 391 |||||||||||||||||||| Sbjct: 1255 cacatccatatttgcatttc 1274
>emb|BX901906.3| Mouse DNA sequence from clone RP23-328F9 on chromosome 2, complete sequence Length = 213629 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 ttccatgaaacagcacagct 162 |||||||||||||||||||| Sbjct: 57543 ttccatgaaacagcacagct 57524
>gb|AC113458.10| Mus musculus chromosome 3, clone RP23-372O21, complete sequence Length = 232529 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 agaggcacaaactccctgtt 272 |||||||||||||||||||| Sbjct: 146507 agaggcacaaactccctgtt 146488
>dbj|AB019230.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MEB5 Length = 74968 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 cacatccatatttgcatttc 391 |||||||||||||||||||| Sbjct: 33282 cacatccatatttgcatttc 33301
>dbj|AK066946.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089G05, full insert sequence Length = 575 Score = 40.1 bits (20), Expect = 5.7 Identities = 32/36 (88%) Strand = Plus / Minus Query: 221 acttgataagagactccatagcttcaaagaatagag 256 |||||| |||||||||||| ||||| ||||| |||| Sbjct: 399 acttgagaagagactccatggcttcgaagaagagag 364
>emb|BX248238.5| Zebrafish DNA sequence from clone CH211-169J21 in linkage group 20, complete sequence Length = 158302 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 acaataacaacacaatacaa 131 |||||||||||||||||||| Sbjct: 126271 acaataacaacacaatacaa 126290
>emb|AL132668.4|CNS01DT9 Human chromosome 14 DNA sequence BAC R-550M19 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 175725 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 252 tagaggcacaaactccctgt 271 |||||||||||||||||||| Sbjct: 98529 tagaggcacaaactccctgt 98548
>dbj|AP003530.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-514H18, complete sequence Length = 205804 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 380 tatttgcatttctcctcttg 399 |||||||||||||||||||| Sbjct: 13697 tatttgcatttctcctcttg 13716
>gb|AC104225.18| Mus musculus chromosome 15, clone RP23-74H8, complete sequence Length = 246325 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 382 tttgcatttctcctcttggc 401 |||||||||||||||||||| Sbjct: 23035 tttgcatttctcctcttggc 23054
>gb|AC170734.3| Sorex araneus clone SA_Ba-257D3, complete sequence Length = 122469 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 cacactttgcaccaggagca 306 |||||||||||||||||||| Sbjct: 47122 cacactttgcaccaggagca 47103
>emb|BX004808.5| Zebrafish DNA sequence from clone CH211-51B23 in linkage group 16, complete sequence Length = 184760 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 gtaaagtagaagtaacacaa 115 |||||||||||||||||||| Sbjct: 47402 gtaaagtagaagtaacacaa 47383 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 gtaaagtagaagtaacacaa 115 |||||||||||||||||||| Sbjct: 46938 gtaaagtagaagtaacacaa 46919
>gb|L77117.1| Methanocaldococcus jannaschii DSM 2661, complete genome Length = 1664970 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 373 acatccatatttgcatttct 392 |||||||||||||||||||| Sbjct: 1359986 acatccatatttgcatttct 1360005
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 5.7 Identities = 32/36 (88%) Strand = Plus / Minus Query: 221 acttgataagagactccatagcttcaaagaatagag 256 |||||| |||||||||||| ||||| ||||| |||| Sbjct: 16499839 acttgagaagagactccatggcttcgaagaagagag 16499804
>emb|AL844146.2| Mouse DNA sequence from clone RP24-89J1 on chromosome 2, complete sequence Length = 233417 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 ttccatgaaacagcacagct 162 |||||||||||||||||||| Sbjct: 85626 ttccatgaaacagcacagct 85645
>dbj|AP003181.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-94P11, complete sequence Length = 165611 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 380 tatttgcatttctcctcttg 399 |||||||||||||||||||| Sbjct: 74368 tatttgcatttctcctcttg 74387 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,281,524 Number of Sequences: 3902068 Number of extensions: 4281524 Number of successful extensions: 83401 Number of sequences better than 10.0: 62 Number of HSP's better than 10.0 without gapping: 62 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 83161 Number of HSP's gapped (non-prelim): 237 length of query: 427 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 405 effective length of database: 17,147,199,772 effective search space: 6944615907660 effective search space used: 6944615907660 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
