ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl32f07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC104711.2| Oryza sativa (japonica cultivar-group) chromosome... 143 5e-31
2emb|Y15226.1|OSIMPB2 Oryza sativa mRNA for importin beta-like pr... 143 5e-31
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 143 5e-31
4dbj|AK065625.1| Oryza sativa (japonica cultivar-group) cDNA clon... 143 5e-31
5dbj|AK060810.1| Oryza sativa (japonica cultivar-group) cDNA clon... 143 5e-31
6dbj|AB011270.1| Oryza sativa (japonica cultivar-group) mRNA for ... 143 5e-31
7gb|BT019243.1| Zea mays clone Contig916.F mRNA sequence 86 1e-13
8gb|AY108893.1| Zea mays PCO061793 mRNA sequence 76 1e-10
9dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
10dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete ge... 42 1.4
11dbj|AP005420.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
12gb|AC166830.3| Mus musculus BAC clone RP23-246O1 from chromosome... 40 5.5
13ref|NM_001039354.1| Mus musculus lin-7 homolog A (C. elegans) (L... 40 5.5
14ref|NM_001033223.2| Mus musculus lin-7 homolog A (C. elegans) (L... 40 5.5
15gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.5
16gb|AC166263.9| Mus musculus BAC RP23-145L7 (Roswell Park Cancer... 40 5.5
17gb|AC139512.20| Mus musculus chromosome 6, clone RP24-540G13, co... 40 5.5
18gb|AC144867.2| Xenopus tropicalis clone ISB-376E5, complete sequ... 40 5.5
19gb|AC144864.2| Xenopus tropicalis clone ISB-289E7, complete sequ... 40 5.5
20emb|BX664612.15| Zebrafish DNA sequence from clone DKEYP-78B3 in... 40 5.5
21emb|CR457463.6| Zebrafish DNA sequence from clone DKEY-110G19 in... 40 5.5
22ref|XM_673180.1| Plasmodium berghei strain ANKA hypothetical pro... 40 5.5
23gb|AC144865.2| Xenopus tropicalis clone ISB-366A10, complete seq... 40 5.5
24gb|AC155168.3| Mus musculus BAC clone RP23-208M17 from chromosom... 40 5.5
25emb|AL008970.3|PFMAL3P4 Plasmodium falciparum MAL3P4 40 5.5
26gb|BC085538.1| Danio rerio zgc:103517, mRNA (cDNA clone MGC:1035... 40 5.5
27emb|X60207.1|ECOEXRETB Escherichia coli protein whose overexpre... 40 5.5
28gb|AC118981.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 5.5
29gb|AC161267.2| Mus musculus BAC clone RP23-247F21 from chromosom... 40 5.5
30gb|BC105965.1| Mus musculus lin-7 homolog A (C. elegans), mRNA (... 40 5.5
31dbj|AK030326.1| Mus musculus 11 days pregnant adult female ovary... 40 5.5
32dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
33gb|AC134229.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.5
34ref|NM_001007341.1| Danio rerio zgc:103517 (zgc:103517), mRNA 40 5.5
35gb|M55249.1|ECO67RTDM Escherichia coli retron Ec67 Dam methylase... 40 5.5
36emb|BX294441.9| Mouse DNA sequence from clone RP23-421H1 on chro... 40 5.5
37emb|AL844512.16| Zebrafish DNA sequence from clone DKEY-8M7, com... 40 5.5
38gb|AC117684.10| Mus musculus chromosome 9, clone RP23-438A6, com... 40 5.5
39emb|AL935206.8| Zebrafish DNA sequence from clone CH211-254A7, c... 40 5.5
40gb|AC162912.5| Mus musculus BAC clone RP24-381G1 from chromosome... 40 5.5
41gb|AC114988.21| Mus musculus chromosome 7, clone RP23-207N5, com... 40 5.5
42emb|AL844863.7| Mouse DNA sequence from clone RP23-273C23 on chr... 40 5.5
43emb|AL672251.10| Mouse DNA sequence from clone RP23-16O15 on chr... 40 5.5
44gb|M24363.1|ECOMSDNA E. coli multicopy single stranded DNA (msDN... 40 5.5 
>gb|AC104711.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1320_D10,
             complete sequence
          Length = 134183

 Score =  143 bits (72), Expect = 5e-31
 Identities = 102/112 (91%)
 Strand = Plus / Minus

                                                                         
Query: 298   gcttggtttatcatcccctgggtccatgacgccgtctccctcacttcatcatccagatcg 357
             |||||||||||||| ||||||| ||||||||| || ||||| ||||||||||||| ||||
Sbjct: 64576 gcttggtttatcattccctgggcccatgacgcggtgtccctaacttcatcatccaaatcg 64517

                                                                 
Query: 358   aggcactccctcaagaactcaacatggaagaggtggctcttgaacagatcct 409
              |||||||||||| |||||||||||||||||||| ||| |||||||||||||
Sbjct: 64516 tggcactccctcaggaactcaacatggaagaggttgcttttgaacagatcct 64465
to top
>emb|Y15226.1|OSIMPB2 Oryza sativa mRNA for importin beta-like protein Imb2
          Length = 2838

 Score =  143 bits (72), Expect = 5e-31
 Identities = 102/112 (91%)
 Strand = Plus / Minus

                                                                        
Query: 298  gcttggtttatcatcccctgggtccatgacgccgtctccctcacttcatcatccagatcg 357
            |||||||||||||| ||||||| ||||||||| || ||||| ||||||||||||| ||||
Sbjct: 2583 gcttggtttatcattccctgggcccatgacgcggtgtccctaacttcatcatccaaatcg 2524

                                                                
Query: 358  aggcactccctcaagaactcaacatggaagaggtggctcttgaacagatcct 409
             |||||||||||| |||||||||||||||||||| ||| |||||||||||||
Sbjct: 2523 tggcactccctcaggaactcaacatggaagaggttgcttttgaacagatcct 2472
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  143 bits (72), Expect = 5e-31
 Identities = 102/112 (91%)
 Strand = Plus / Minus

                                                                            
Query: 298      gcttggtttatcatcccctgggtccatgacgccgtctccctcacttcatcatccagatcg 357
                |||||||||||||| ||||||| ||||||||| || ||||| ||||||||||||| ||||
Sbjct: 16565837 gcttggtttatcattccctgggcccatgacgcggtgtccctaacttcatcatccaaatcg 16565778

                                                                    
Query: 358      aggcactccctcaagaactcaacatggaagaggtggctcttgaacagatcct 409
                 |||||||||||| |||||||||||||||||||| ||| |||||||||||||
Sbjct: 16565777 tggcactccctcaggaactcaacatggaagaggttgcttttgaacagatcct 16565726
to top
>dbj|AK065625.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013029L11, full
            insert sequence
          Length = 3150

 Score =  143 bits (72), Expect = 5e-31
 Identities = 102/112 (91%)
 Strand = Plus / Minus

                                                                        
Query: 298  gcttggtttatcatcccctgggtccatgacgccgtctccctcacttcatcatccagatcg 357
            |||||||||||||| ||||||| ||||||||| || ||||| ||||||||||||| ||||
Sbjct: 2887 gcttggtttatcattccctgggcccatgacgcggtgtccctaacttcatcatccaaatcg 2828

                                                                
Query: 358  aggcactccctcaagaactcaacatggaagaggtggctcttgaacagatcct 409
             |||||||||||| |||||||||||||||||||| ||| |||||||||||||
Sbjct: 2827 tggcactccctcaggaactcaacatggaagaggttgcttttgaacagatcct 2776
to top
>dbj|AK060810.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-G12, full
            insert sequence
          Length = 2038

 Score =  143 bits (72), Expect = 5e-31
 Identities = 102/112 (91%)
 Strand = Plus / Minus

                                                                        
Query: 298  gcttggtttatcatcccctgggtccatgacgccgtctccctcacttcatcatccagatcg 357
            |||||||||||||| ||||||| ||||||||| || ||||| ||||||||||||| ||||
Sbjct: 1775 gcttggtttatcattccctgggcccatgacgcggtgtccctaacttcatcatccaaatcg 1716

                                                                
Query: 358  aggcactccctcaagaactcaacatggaagaggtggctcttgaacagatcct 409
             |||||||||||| |||||||||||||||||||| ||| |||||||||||||
Sbjct: 1715 tggcactccctcaggaactcaacatggaagaggttgcttttgaacagatcct 1664
to top
>dbj|AB011270.1| Oryza sativa (japonica cultivar-group) mRNA for importin-beta1,
            complete cds
          Length = 3115

 Score =  143 bits (72), Expect = 5e-31
 Identities = 102/112 (91%)
 Strand = Plus / Minus

                                                                        
Query: 298  gcttggtttatcatcccctgggtccatgacgccgtctccctcacttcatcatccagatcg 357
            |||||||||||||| ||||||| ||||||||| || ||||| ||||||||||||| ||||
Sbjct: 2847 gcttggtttatcattccctgggcccatgacgcggtgtccctaacttcatcatccaaatcg 2788

                                                                
Query: 358  aggcactccctcaagaactcaacatggaagaggtggctcttgaacagatcct 409
             |||||||||||| |||||||||||||||||||| ||| |||||||||||||
Sbjct: 2787 tggcactccctcaggaactcaacatggaagaggttgcttttgaacagatcct 2736
to top
>gb|BT019243.1| Zea mays clone Contig916.F mRNA sequence
          Length = 1196

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 49/51 (96%)
 Strand = Plus / Plus

                                                              
Query: 359 ggcactccctcaagaactcaacatggaagaggtggctcttgaacagatcct 409
           |||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 376 ggcactccctcaagaactcaacatggaataggtgggtcttgaacagatcct 426



 Score = 48.1 bits (24), Expect = 0.022
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                               
Query: 301 tggtttatcatcccctgggtccatgacgccgtctccctcacttcatcatcca 352
           ||||||||||||||||||| ||||   || |||||||  |||||||||||||
Sbjct: 312 tggtttatcatcccctgggcccattgtgcagtctcccgaacttcatcatcca 363
to top
>gb|AY108893.1| Zea mays PCO061793 mRNA sequence
          Length = 539

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 44/46 (95%)
 Strand = Plus / Minus

                                                         
Query: 364 tccctcaagaactcaacatggaagaggtggctcttgaacagatcct 409
           ||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 214 tccctcaagaactcaacatggaataggtgggtcttgaacagatcct 169



 Score = 48.1 bits (24), Expect = 0.022
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                               
Query: 301 tggtttatcatcccctgggtccatgacgccgtctccctcacttcatcatcca 352
           ||||||||||||||||||| ||||   || |||||||  |||||||||||||
Sbjct: 283 tggtttatcatcccctgggcccattgtgcagtctcccgaacttcatcatcca 232
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 157      tactgactgactgacgctaca 177
                |||||||||||||||||||||
Sbjct: 15320277 tactgactgactgacgctaca 15320297
to top
>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome
          Length = 3630528

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 118     aaataataaaaccacccaaga 138
               |||||||||||||||||||||
Sbjct: 1904275 aaataataaaaccacccaaga 1904255
to top
>dbj|AP005420.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0418B08
          Length = 165909

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 157   tactgactgactgacgctaca 177
             |||||||||||||||||||||
Sbjct: 99466 tactgactgactgacgctaca 99486
to top
>gb|AC166830.3| Mus musculus BAC clone RP23-246O1 from chromosome 13, complete sequence
          Length = 213487

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 10    gcaagcatgcaacacaaacc 29
             ||||||||||||||||||||
Sbjct: 39918 gcaagcatgcaacacaaacc 39899
to top
>ref|NM_001039354.1| Mus musculus lin-7 homolog A (C. elegans) (Lin7a), transcript variant
            1, mRNA
          Length = 5887

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 303  gtttatcatcccctgggtcc 322
            ||||||||||||||||||||
Sbjct: 4933 gtttatcatcccctgggtcc 4952
to top
>ref|NM_001033223.2| Mus musculus lin-7 homolog A (C. elegans) (Lin7a), transcript variant
            2, mRNA
          Length = 5845

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 303  gtttatcatcccctgggtcc 322
            ||||||||||||||||||||
Sbjct: 4891 gtttatcatcccctgggtcc 4910
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 319     gtccatgacgccgtctccctcact 342
               ||||| ||||||||||||||||||
Sbjct: 7267256 gtccaggacgccgtctccctcact 7267279
to top
>gb|AC166263.9| Mus musculus  BAC RP23-145L7 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 191221

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 122   aataaaaccacccaagacat 141
             ||||||||||||||||||||
Sbjct: 90661 aataaaaccacccaagacat 90642
to top
>gb|AC139512.20| Mus musculus chromosome 6, clone RP24-540G13, complete sequence
          Length = 179236

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 122   aataaaaccacccaagacat 141
             ||||||||||||||||||||
Sbjct: 74241 aataaaaccacccaagacat 74260
to top
>gb|AC144867.2| Xenopus tropicalis clone ISB-376E5, complete sequence
          Length = 89767

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 122   aataaaaccacccaagacat 141
             ||||||||||||||||||||
Sbjct: 59806 aataaaaccacccaagacat 59787
to top
>gb|AC144864.2| Xenopus tropicalis clone ISB-289E7, complete sequence
          Length = 71786

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 122   aataaaaccacccaagacat 141
             ||||||||||||||||||||
Sbjct: 30154 aataaaaccacccaagacat 30135
to top
>emb|BX664612.15| Zebrafish DNA sequence from clone DKEYP-78B3 in linkage group 7,
             complete sequence
          Length = 186965

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 189   acccttctgttcatatgagc 208
             ||||||||||||||||||||
Sbjct: 50365 acccttctgttcatatgagc 50384
to top
>emb|CR457463.6| Zebrafish DNA sequence from clone DKEY-110G19 in linkage group 4,
             complete sequence
          Length = 145220

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 333   ctccctcacttcatcatcca 352
             ||||||||||||||||||||
Sbjct: 84088 ctccctcacttcatcatcca 84107
to top
>ref|XM_673180.1| Plasmodium berghei strain ANKA hypothetical protein (PB000588.03.0)
            partial mRNA
          Length = 2124

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 115  tgaaaataataaaaccacccaaga 138
            |||||||||||||| |||||||||
Sbjct: 1074 tgaaaataataaaatcacccaaga 1097
to top
>gb|AC144865.2| Xenopus tropicalis clone ISB-366A10, complete sequence
          Length = 91163

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 122   aataaaaccacccaagacat 141
             ||||||||||||||||||||
Sbjct: 45701 aataaaaccacccaagacat 45720
to top
>gb|AC155168.3| Mus musculus BAC clone RP23-208M17 from chromosome 10, complete
             sequence
          Length = 174112

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 303   gtttatcatcccctgggtcc 322
             ||||||||||||||||||||
Sbjct: 78785 gtttatcatcccctgggtcc 78804
to top
>emb|AL008970.3|PFMAL3P4 Plasmodium falciparum MAL3P4
          Length = 113880

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 32    gtagaatacaataataatga 51
             ||||||||||||||||||||
Sbjct: 74063 gtagaatacaataataatga 74044
to top
>gb|BC085538.1| Danio rerio zgc:103517, mRNA (cDNA clone MGC:103517 IMAGE:7239322),
            complete cds
          Length = 1996

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 333  ctccctcacttcatcatcca 352
            ||||||||||||||||||||
Sbjct: 1220 ctccctcacttcatcatcca 1201
to top
>emb|X60207.1|ECOEXRETB Escherichia coli  protein whose overexpression delete the retron
          Length = 4225

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 232  atcaataaaaccaaacatcc 251
            ||||||||||||||||||||
Sbjct: 2322 atcaataaaaccaaacatcc 2303
to top
>gb|AC118981.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0060E18, from chromosome 3, complete sequence
          Length = 147983

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 319   gtccatgacgccgtctccctcact 342
             ||||| ||||||||||||||||||
Sbjct: 18512 gtccaggacgccgtctccctcact 18535
to top
>gb|AC161267.2| Mus musculus BAC clone RP23-247F21 from chromosome 13, complete sequence
          Length = 176277

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 10     gcaagcatgcaacacaaacc 29
              ||||||||||||||||||||
Sbjct: 160976 gcaagcatgcaacacaaacc 160957
to top
>gb|BC105965.1| Mus musculus lin-7 homolog A (C. elegans), mRNA (cDNA clone
            MGC:102231 IMAGE:30620416), complete cds
          Length = 5500

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 303  gtttatcatcccctgggtcc 322
            ||||||||||||||||||||
Sbjct: 4516 gtttatcatcccctgggtcc 4535
to top
>dbj|AK030326.1| Mus musculus 11 days pregnant adult female ovary and uterus cDNA,
            RIKEN full-length enriched library, clone:5031438B01
            product:unclassifiable, full insert sequence
          Length = 3825

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 303  gtttatcatcccctgggtcc 322
            ||||||||||||||||||||
Sbjct: 2871 gtttatcatcccctgggtcc 2890
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 319     gtccatgacgccgtctccctcact 342
               ||||| ||||||||||||||||||
Sbjct: 7265151 gtccaggacgccgtctccctcact 7265174
to top
>gb|AC134229.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1081D05,
             complete sequence
          Length = 99133

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 319   gtccatgacgccgtctccctcact 342
             ||||| ||||||||||||||||||
Sbjct: 94009 gtccaggacgccgtctccctcact 94032
to top
>ref|NM_001007341.1| Danio rerio zgc:103517 (zgc:103517), mRNA
          Length = 1996

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 333  ctccctcacttcatcatcca 352
            ||||||||||||||||||||
Sbjct: 1220 ctccctcacttcatcatcca 1201
to top
>gb|M55249.1|ECO67RTDM Escherichia coli retron Ec67 Dam methylase and reverse transcriptase
            genes, complete cds; and unknown genes
          Length = 11334

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 232  atcaataaaaccaaacatcc 251
            ||||||||||||||||||||
Sbjct: 8780 atcaataaaaccaaacatcc 8761
to top
>emb|BX294441.9| Mouse DNA sequence from clone RP23-421H1 on chromosome 2, complete
             sequence
          Length = 96360

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 231   catcaataaaaccaaacatc 250
             ||||||||||||||||||||
Sbjct: 60253 catcaataaaaccaaacatc 60234
to top
>emb|AL844512.16| Zebrafish DNA sequence from clone DKEY-8M7, complete sequence
          Length = 231383

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 333   ctccctcacttcatcatcca 352
             ||||||||||||||||||||
Sbjct: 42486 ctccctcacttcatcatcca 42505
to top
>gb|AC117684.10| Mus musculus chromosome 9, clone RP23-438A6, complete sequence
          Length = 196053

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 122   aataaaaccacccaagacat 141
             ||||||||||||||||||||
Sbjct: 64475 aataaaaccacccaagacat 64494
to top
>emb|AL935206.8| Zebrafish DNA sequence from clone CH211-254A7, complete sequence
          Length = 169723

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 106    ttgacagactgaaaataataaaac 129
              |||| |||||||||||||||||||
Sbjct: 133318 ttgaaagactgaaaataataaaac 133295
to top
>gb|AC162912.5| Mus musculus BAC clone RP24-381G1 from chromosome 13, complete sequence
          Length = 190181

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 10     gcaagcatgcaacacaaacc 29
              ||||||||||||||||||||
Sbjct: 123250 gcaagcatgcaacacaaacc 123231
to top
>gb|AC114988.21| Mus musculus chromosome 7, clone RP23-207N5, complete sequence
          Length = 196013

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 33     tagaatacaataataatgag 52
              ||||||||||||||||||||
Sbjct: 141469 tagaatacaataataatgag 141450
to top
>emb|AL844863.7| Mouse DNA sequence from clone RP23-273C23 on chromosome X, complete
             sequence
          Length = 143387

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 122   aataaaaccacccaagacat 141
             ||||||||||||||||||||
Sbjct: 74245 aataaaaccacccaagacat 74226
to top
>emb|AL672251.10| Mouse DNA sequence from clone RP23-16O15 on chromosome 2, complete
             sequence
          Length = 204214

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 122   aataaaaccacccaagacat 141
             ||||||||||||||||||||
Sbjct: 93771 aataaaaccacccaagacat 93752
to top
>gb|M24363.1|ECOMSDNA E. coli multicopy single stranded DNA (msDNA) and RNA (msdRNA) genes,
            unidentified open reading frame gene, complete cds
          Length = 2424

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 232  atcaataaaaccaaacatcc 251
            ||||||||||||||||||||
Sbjct: 1359 atcaataaaaccaaacatcc 1340


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,883,710
Number of Sequences: 3902068
Number of extensions: 3883710
Number of successful extensions: 88721
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88505
Number of HSP's gapped (non-prelim): 216
length of query: 409
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 387
effective length of database: 17,147,199,772
effective search space: 6635966311764
effective search space used: 6635966311764
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top