ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl32f06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FANCC_MOUSE (P50652) Fanconi anemia group C protein homolog (Pro... 28 6.7
2ENGC2_VIBVY (Q7MGA2) Probable GTPase engC protein 2 (EC 3.6.1.-) 28 8.8
3ENGC2_VIBVU (Q8D4Q0) Probable GTPase engC protein 2 (EC 3.6.1.-) 28 8.8

>FANCC_MOUSE (P50652) Fanconi anemia group C protein homolog (Protein FACC)|
          Length = 591

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -3

Query: 349 CWSSV--AIHETQRKALSCLCPVLPSSPRMRRQNG 251
           CW+ +  +I+E+Q+  + CLC ++   PR   ++G
Sbjct: 75  CWNPLIFSIYESQKIVIWCLCCLMNKEPRTSAESG 109



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>ENGC2_VIBVY (Q7MGA2) Probable GTPase engC protein 2 (EC 3.6.1.-)|
          Length = 353

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +1

Query: 292 DTDRTGLSSVFHGSRQNSNKGR*TTTSDSFHLVCDAS 402
           +T +TG      G R++ +KGR TTT+ S H++ D +
Sbjct: 215 ETQQTG------GIREDDSKGRHTTTARSVHMIPDGA 245



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>ENGC2_VIBVU (Q8D4Q0) Probable GTPase engC protein 2 (EC 3.6.1.-)|
          Length = 349

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +1

Query: 292 DTDRTGLSSVFHGSRQNSNKGR*TTTSDSFHLVCDAS 402
           +T +TG      G R++ +KGR TTT+ S H++ D +
Sbjct: 211 ETQQTG------GIREDDSKGRHTTTARSVHMIPDGA 241


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,576,917
Number of Sequences: 219361
Number of extensions: 1155499
Number of successful extensions: 2757
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2757
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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