ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl32f04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK070310.1| Oryza sativa (japonica cultivar-group) cDNA clon... 172 5e-40
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 98 3e-17
3dbj|AP004753.3| Oryza sativa (japonica cultivar-group) genomic D... 98 3e-17
4dbj|AP005609.3| Oryza sativa (japonica cultivar-group) genomic D... 98 3e-17
5emb|BX817279.1|CNS0AB7C Arabidopsis thaliana Full-length cDNA Co... 58 2e-05
6ref|NM_101539.1| Arabidopsis thaliana AVPL1 (VACUOLAR-PYROPHOSPH... 56 9e-05
7gb|AE011990.1| Xanthomonas axonopodis pv. citri str. 306, secti... 52 0.001
8ref|NM_106541.2| Arabidopsis thaliana AVP2 AT1G78920 (AVP2) mRNA... 50 0.005
9gb|BT010353.1| Arabidopsis thaliana At1g78920 mRNA, complete cds 50 0.005
10dbj|AK220927.1| Arabidopsis thaliana mRNA for vacuolar-pyrophosp... 50 0.005
11gb|AY054485.1| Arabidopsis thaliana Similar to vacuolar H+-pyrop... 50 0.005
12emb|BX815888.1|CNS0ABNT Arabidopsis thaliana Full-length cDNA Co... 50 0.005
13emb|BX816636.1|CNS0AAKC Arabidopsis thaliana Full-length cDNA Co... 50 0.005
14gb|AF182813.1|AF182813 Arabidopsis thaliana vacuolar-type H+-tra... 50 0.005
15dbj|AB034696.1| Arabidopsis thaliana AVPL1 mRNA for vacuolar-pyr... 50 0.005
16dbj|D88820.1| Acetabularia mediterranea mRNA for inorganic pyrop... 44 0.33
17gb|CP000249.1| Frankia sp. CcI3, complete genome 42 1.3
18gb|AC157991.5| Mus musculus chromosome 18, clone RP23-335B10, co... 40 5.2
19gb|AC102155.10| Mus musculus chromosome 18, clone RP23-334J12, c... 40 5.2
20gb|AC116130.15| Mus musculus chromosome 17, clone RP23-98F21, co... 40 5.2
21gb|AC153972.6| Mus musculus 10 BAC RP24-383P4 (Roswell Park Canc... 40 5.2
22gb|AC132608.2| Mus musculus BAC clone RP23-451E12 from chromosom... 40 5.2
23emb|AL031687.17|HS998H6 Human DNA sequence from clone RP5-998H6 ... 40 5.2
24gb|AC067747.7| Homo sapiens chromosome 10 clone RP11-406H21, com... 40 5.2
25dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138 40 5.2
26gb|AC159504.5| Mus musculus 10 BAC RP23-302J6 (Roswell Park Canc... 40 5.2
27gb|AF243083.1|F243081S03 Homo sapiens intrinsic factor-vitamin B... 40 5.2
28gb|AF532114.1| Mus musculus strain 129/SvJ BAC clone citb544e14 ... 40 5.2
29gb|AC069275.3|AC069275 Homo sapiens chromosome 3 clone RP11-194C... 40 5.2
30gb|AC023472.4|AC023472 Homo sapiens chromosome 3 clone RP11-156B... 40 5.2
31gb|AC104098.5| Mus musculus BAC clone RP24-372H3 from 5, complet... 40 5.2
32gb|AC069276.4| Homo sapiens chromosome 3 clone RP11-470E10 map 3... 40 5.2
33gb|AC018832.5| Homo sapiens chromosome 3 clone RP11-481O7 map 3p... 40 5.2

>dbj|AK070310.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023047F16, full
            insert sequence
          Length = 3048

 Score =  172 bits (87), Expect = 5e-40
 Identities = 114/123 (92%)
 Strand = Plus / Minus

                                                                        
Query: 260  tgtgatcgtggcgagcatcttgatgagaacatggatcgaaggccccgccgtgtctttgaa 319
            |||||| || ||||||||||| || ||||||||||| |||||||||||||||||||| ||
Sbjct: 2867 tgtgattgtagcgagcatcttaataagaacatggatggaaggccccgccgtgtctttaaa 2808

                                                                        
Query: 320  tggatctccaaccgtatcaccagtaattgcagccttgtgagcctcactgcctttaccacc 379
            |||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||
Sbjct: 2807 tggatctccaaccgtatcaccagtaactgcagccttgtgagactcactgcctttgccacc 2748

               
Query: 380  aag 382
            |||
Sbjct: 2747 aag 2745



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 67/73 (91%)
 Strand = Plus / Plus

                                                                            
Query: 260      tgtgatcgtggcgagcatcttgatgagaacatggatcgaaggccccgccgtgtctttgaa 319
                |||||| || ||||||||||| || ||||||||||| |||||||||||||||||||| ||
Sbjct: 19932118 tgtgattgtagcgagcatcttaataagaacatggatggaaggccccgccgtgtctttaaa 19932177

                             
Query: 320      tggatctccaacc 332
                |||||||||||||
Sbjct: 19932178 tggatctccaacc 19932190



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 48/51 (94%)
 Strand = Plus / Plus

                                                                   
Query: 332      cgtatcaccagtaattgcagccttgtgagcctcactgcctttaccaccaag 382
                |||||||||||||| |||||||||||||| |||||||||||| ||||||||
Sbjct: 19932561 cgtatcaccagtaactgcagccttgtgagactcactgcctttgccaccaag 19932611



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>dbj|AP004753.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0508B05
          Length = 166165

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 67/73 (91%)
 Strand = Plus / Plus

                                                                          
Query: 260    tgtgatcgtggcgagcatcttgatgagaacatggatcgaaggccccgccgtgtctttgaa 319
              |||||| || ||||||||||| || ||||||||||| |||||||||||||||||||| ||
Sbjct: 109719 tgtgattgtagcgagcatcttaataagaacatggatggaaggccccgccgtgtctttaaa 109778

                           
Query: 320    tggatctccaacc 332
              |||||||||||||
Sbjct: 109779 tggatctccaacc 109791



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 48/51 (94%)
 Strand = Plus / Plus

                                                                 
Query: 332    cgtatcaccagtaattgcagccttgtgagcctcactgcctttaccaccaag 382
              |||||||||||||| |||||||||||||| |||||||||||| ||||||||
Sbjct: 110162 cgtatcaccagtaactgcagccttgtgagactcactgcctttgccaccaag 110212



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>dbj|AP005609.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0014M17
          Length = 156778

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 67/73 (91%)
 Strand = Plus / Plus

                                                                         
Query: 260   tgtgatcgtggcgagcatcttgatgagaacatggatcgaaggccccgccgtgtctttgaa 319
             |||||| || ||||||||||| || ||||||||||| |||||||||||||||||||| ||
Sbjct: 36239 tgtgattgtagcgagcatcttaataagaacatggatggaaggccccgccgtgtctttaaa 36298

                          
Query: 320   tggatctccaacc 332
             |||||||||||||
Sbjct: 36299 tggatctccaacc 36311



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 48/51 (94%)
 Strand = Plus / Plus

                                                                
Query: 332   cgtatcaccagtaattgcagccttgtgagcctcactgcctttaccaccaag 382
             |||||||||||||| |||||||||||||| |||||||||||| ||||||||
Sbjct: 36682 cgtatcaccagtaactgcagccttgtgagactcactgcctttgccaccaag 36732



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>emb|BX817279.1|CNS0AB7C Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL10ZC09 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 508

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                       
Query: 309 gtgtctttgaatggatctccaaccgtatcaccagtaattgcagccttgtgagcctcactg 368
           ||||| ||||| |||||||| || |||||||||||||  || || |||||||| ||||| 
Sbjct: 237 gtgtccttgaacggatctcccacggtatcaccagtaacagctgctttgtgagcttcactt 178

                            
Query: 369 cctttaccaccaagtgc 385
           ||||| || ||||||||
Sbjct: 177 cctttgcccccaagtgc 161



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>ref|NM_101539.1| Arabidopsis thaliana AVPL1 (VACUOLAR-PYROPHOSPHATASE LIKE PROTEIN 1)
            AT1G16780 (AVPL1) mRNA, complete cds
          Length = 2578

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 97/120 (80%)
 Strand = Plus / Minus

                                                                        
Query: 239  aaagatcggagctatgaccagtgtgatcgtggcgagcatcttgatgagaacatggatcga 298
            |||||| ||||| ||||| || ||||| || || | ||| ||||||||||| || |||||
Sbjct: 2403 aaagataggagccatgacaagcgtgatagtcgccaacattttgatgagaacgtgaatcga 2344

                                                                        
Query: 299  aggccccgccgtgtctttgaatggatctccaaccgtatcaccagtaattgcagccttgtg 358
             || || || ||||| ||||| || ||||| || ||||||||||| | |||||| |||||
Sbjct: 2343 cggtcctgctgtgtccttgaaagggtctcccacagtatcaccagttactgcagctttgtg 2284



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>gb|AE011990.1| Xanthomonas axonopodis pv. citri str. 306,  section 368 of 469 of the
            complete genome
          Length = 12292

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 62/74 (83%)
 Strand = Plus / Minus

                                                                        
Query: 300  ggccccgccgtgtctttgaatggatctccaaccgtatcaccagtaattgcagccttgtga 359
            |||||||| ||||||||| |||| || || || || || || ||||| ||||||||||| 
Sbjct: 5182 ggccccgcggtgtctttgtatgggtcaccgactgtgtcgccggtaatcgcagccttgtgc 5123

                          
Query: 360  gcctcactgccttt 373
            ||||| ||||||||
Sbjct: 5122 gcctcgctgccttt 5109



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>ref|NM_106541.2| Arabidopsis thaliana AVP2 AT1G78920 (AVP2) mRNA, complete cds
          Length = 3082

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 64/77 (83%)
 Strand = Plus / Minus

                                                                        
Query: 309  gtgtctttgaatggatctccaaccgtatcaccagtaattgcagccttgtgagcctcactg 368
            ||||| ||||| |||||||| || ||||||||||| |  || || |||||||| ||||| 
Sbjct: 2786 gtgtccttgaacggatctcccacggtatcaccagtcacagctgctttgtgagcttcactt 2727

                             
Query: 369  cctttaccaccaagtgc 385
            ||||| || ||||||||
Sbjct: 2726 cctttgcccccaagtgc 2710



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>gb|BT010353.1| Arabidopsis thaliana At1g78920 mRNA, complete cds
          Length = 2409

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 64/77 (83%)
 Strand = Plus / Minus

                                                                        
Query: 309  gtgtctttgaatggatctccaaccgtatcaccagtaattgcagccttgtgagcctcactg 368
            ||||| ||||| |||||||| || ||||||||||| |  || || |||||||| ||||| 
Sbjct: 2333 gtgtccttgaacggatctcccacggtatcaccagtcacagctgctttgtgagcttcactt 2274

                             
Query: 369  cctttaccaccaagtgc 385
            ||||| || ||||||||
Sbjct: 2273 cctttgcccccaagtgc 2257



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>dbj|AK220927.1| Arabidopsis thaliana mRNA for vacuolar-pyrophosphatase like
           protein, complete cds, clone: RAFL22-50-C13
          Length = 1137

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 64/77 (83%)
 Strand = Plus / Minus

                                                                       
Query: 309 gtgtctttgaatggatctccaaccgtatcaccagtaattgcagccttgtgagcctcactg 368
           ||||| ||||| |||||||| || ||||||||||| |  || || |||||||| ||||| 
Sbjct: 832 gtgtccttgaacggatctcccacggtatcaccagtcacagctgctttgtgagcttcactt 773

                            
Query: 369 cctttaccaccaagtgc 385
           ||||| || ||||||||
Sbjct: 772 cctttgcccccaagtgc 756



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>gb|AY054485.1| Arabidopsis thaliana Similar to vacuolar H+-pyrophosphatase
            (At1g78920; F9K20.2) mRNA, complete cds
          Length = 3080

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 64/77 (83%)
 Strand = Plus / Minus

                                                                        
Query: 309  gtgtctttgaatggatctccaaccgtatcaccagtaattgcagccttgtgagcctcactg 368
            ||||| ||||| |||||||| || ||||||||||| |  || || |||||||| ||||| 
Sbjct: 2784 gtgtccttgaacggatctcccacggtatcaccagtcacagctgctttgtgagcttcactt 2725

                             
Query: 369  cctttaccaccaagtgc 385
            ||||| || ||||||||
Sbjct: 2724 cctttgcccccaagtgc 2708



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>emb|BX815888.1|CNS0ABNT Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH15ZB05 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 567

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 64/77 (83%)
 Strand = Plus / Minus

                                                                       
Query: 309 gtgtctttgaatggatctccaaccgtatcaccagtaattgcagccttgtgagcctcactg 368
           ||||| ||||| |||||||| || ||||||||||| |  || || |||||||| ||||| 
Sbjct: 282 gtgtccttgaacggatctcccacggtatcaccagtcacagctgctttgtgagcttcactt 223

                            
Query: 369 cctttaccaccaagtgc 385
           ||||| || ||||||||
Sbjct: 222 cctttgcccccaagtgc 206



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>emb|BX816636.1|CNS0AAKC Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH5ZE09 of Hormone Treated Callus of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 3011

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 64/77 (83%)
 Strand = Plus / Minus

                                                                        
Query: 309  gtgtctttgaatggatctccaaccgtatcaccagtaattgcagccttgtgagcctcactg 368
            ||||| ||||| |||||||| || ||||||||||| |  || || |||||||| ||||| 
Sbjct: 2759 gtgtccttgaacggatctcccacggtatcaccagtcacagctgctttgtgagcttcactt 2700

                             
Query: 369  cctttaccaccaagtgc 385
            ||||| || ||||||||
Sbjct: 2699 cctttgcccccaagtgc 2683



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>gb|AF182813.1|AF182813 Arabidopsis thaliana vacuolar-type H+-translocating inorganic
            pyrophosphatase (AVP2) mRNA, complete cds
          Length = 2403

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 64/77 (83%)
 Strand = Plus / Minus

                                                                        
Query: 309  gtgtctttgaatggatctccaaccgtatcaccagtaattgcagccttgtgagcctcactg 368
            ||||| ||||| |||||||| || ||||||||||| |  || || |||||||| ||||| 
Sbjct: 2327 gtgtccttgaacggatctcccacggtatcaccagtcacagctgctttgtgagcttcactt 2268

                             
Query: 369  cctttaccaccaagtgc 385
            ||||| || ||||||||
Sbjct: 2267 cctttgcccccaagtgc 2251



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>dbj|AB034696.1| Arabidopsis thaliana AVPL1 mRNA for vacuolar-pyrophosphatase like
            protein, complete cds
          Length = 2991

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 64/77 (83%)
 Strand = Plus / Minus

                                                                        
Query: 309  gtgtctttgaatggatctccaaccgtatcaccagtaattgcagccttgtgagcctcactg 368
            ||||| ||||| |||||||| || ||||||||||| |  || || |||||||| ||||| 
Sbjct: 2704 gtgtccttgaacggatctcccacggtatcaccagtcacagctgctttgtgagcttcactt 2645

                             
Query: 369  cctttaccaccaagtgc 385
            ||||| || ||||||||
Sbjct: 2644 cctttgcccccaagtgc 2628



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>dbj|D88820.1| Acetabularia mediterranea mRNA for inorganic pyrophosphatase,
            complete cds
          Length = 3104

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 312  tctttgaatggatctccaaccgtatcacca 341
            |||||||||||||| ||||| |||||||||
Sbjct: 2881 tctttgaatggatcaccaacggtatcacca 2852



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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                            
Query: 293     gatcgaaggccccgccgtgtctttgaatggatctccaaccgtatc 337
               ||||||||| || || ||||| |||||||||||||| || |||||
Sbjct: 5138620 gatcgaagggccggcggtgtccttgaatggatctcccacggtatc 5138576



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>gb|AC157991.5| Mus musculus chromosome 18, clone RP23-335B10, complete sequence
          Length = 198636

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 16     tctgtcacagcatatatatt 35
              ||||||||||||||||||||
Sbjct: 190345 tctgtcacagcatatatatt 190364



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>gb|AC102155.10| Mus musculus chromosome 18, clone RP23-334J12, complete sequence
          Length = 189666

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 16     tctgtcacagcatatatatt 35
              ||||||||||||||||||||
Sbjct: 108288 tctgtcacagcatatatatt 108269



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>gb|AC116130.15| Mus musculus chromosome 17, clone RP23-98F21, complete sequence
          Length = 228842

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 366    ctgcctttaccaccaagtgc 385
              ||||||||||||||||||||
Sbjct: 126443 ctgcctttaccaccaagtgc 126462



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>gb|AC153972.6| Mus musculus 10 BAC RP24-383P4 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 182933

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 364    cactgcctttaccaccaagt 383
              ||||||||||||||||||||
Sbjct: 174810 cactgcctttaccaccaagt 174829



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>gb|AC132608.2| Mus musculus BAC clone RP23-451E12 from chromosome 18, complete sequence
          Length = 201478

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 16     tctgtcacagcatatatatt 35
              ||||||||||||||||||||
Sbjct: 185109 tctgtcacagcatatatatt 185090



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>emb|AL031687.17|HS998H6 Human DNA sequence from clone RP5-998H6 on chromosome 20q13.1 Contains
             the CDH22 gene for cadherin-like 22, a novel gene and two
             CpG islands, complete sequence
          Length = 147815

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 334   tatcaccagtaattgcagcc 353
             ||||||||||||||||||||
Sbjct: 66314 tatcaccagtaattgcagcc 66295



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>gb|AC067747.7| Homo sapiens chromosome 10 clone RP11-406H21, complete sequence
          Length = 147280

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 105   tgaacctctcctttcaatgg 124
             ||||||||||||||||||||
Sbjct: 50030 tgaacctctcctttcaatgg 50011



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>dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138
          Length = 504369

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 294    atcgaaggccccgccgtgtctttg 317
              |||||||||||| |||||||||||
Sbjct: 171830 atcgaaggcccctccgtgtctttg 171807



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>gb|AC159504.5| Mus musculus 10 BAC RP23-302J6 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 201259

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 364   cactgcctttaccaccaagt 383
             ||||||||||||||||||||
Sbjct: 64673 cactgcctttaccaccaagt 64692



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>gb|AF243083.1|F243081S03 Homo sapiens intrinsic factor-vitamin B12 receptor (CUBN) gene,
           exons 5 and 6
          Length = 1728

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 105 tgaacctctcctttcaatgg 124
           ||||||||||||||||||||
Sbjct: 440 tgaacctctcctttcaatgg 421



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>gb|AF532114.1| Mus musculus strain 129/SvJ BAC clone citb544e14 from the MHC region,
              complete sequence
          Length = 153869

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 366    ctgcctttaccaccaagtgc 385
              ||||||||||||||||||||
Sbjct: 101412 ctgcctttaccaccaagtgc 101393



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>gb|AC069275.3|AC069275 Homo sapiens chromosome 3 clone RP11-194C9 map 3p, complete sequence
          Length = 151142

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 18    tgtcacagcatatatattct 37
             ||||||||||||||||||||
Sbjct: 91041 tgtcacagcatatatattct 91060



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>gb|AC023472.4|AC023472 Homo sapiens chromosome 3 clone RP11-156B21 map 3p, complete sequence
          Length = 167220

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 18    tgtcacagcatatatattct 37
             ||||||||||||||||||||
Sbjct: 54326 tgtcacagcatatatattct 54345



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>gb|AC104098.5| Mus musculus BAC clone RP24-372H3 from 5, complete sequence
          Length = 180886

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 346    ttgcagccttgtgagcctca 365
              ||||||||||||||||||||
Sbjct: 127489 ttgcagccttgtgagcctca 127508



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>gb|AC069276.4| Homo sapiens chromosome 3 clone RP11-470E10 map 3p, complete sequence
          Length = 184058

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 18    tgtcacagcatatatattct 37
             ||||||||||||||||||||
Sbjct: 11455 tgtcacagcatatatattct 11436



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>gb|AC018832.5| Homo sapiens chromosome 3 clone RP11-481O7 map 3p, complete sequence
          Length = 185496

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 18    tgtcacagcatatatattct 37
             ||||||||||||||||||||
Sbjct: 19991 tgtcacagcatatatattct 20010


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,837,601
Number of Sequences: 3902068
Number of extensions: 2837601
Number of successful extensions: 51054
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 51000
Number of HSP's gapped (non-prelim): 58
length of query: 386
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 364
effective length of database: 17,147,199,772
effective search space: 6241580717008
effective search space used: 6241580717008
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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