Clone Name | rbastl32f04 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK070310.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023047F16, full insert sequence Length = 3048 Score = 172 bits (87), Expect = 5e-40 Identities = 114/123 (92%) Strand = Plus / Minus Query: 260 tgtgatcgtggcgagcatcttgatgagaacatggatcgaaggccccgccgtgtctttgaa 319 |||||| || ||||||||||| || ||||||||||| |||||||||||||||||||| || Sbjct: 2867 tgtgattgtagcgagcatcttaataagaacatggatggaaggccccgccgtgtctttaaa 2808 Query: 320 tggatctccaaccgtatcaccagtaattgcagccttgtgagcctcactgcctttaccacc 379 |||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||| Sbjct: 2807 tggatctccaaccgtatcaccagtaactgcagccttgtgagactcactgcctttgccacc 2748 Query: 380 aag 382 ||| Sbjct: 2747 aag 2745
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 97.6 bits (49), Expect = 3e-17 Identities = 67/73 (91%) Strand = Plus / Plus Query: 260 tgtgatcgtggcgagcatcttgatgagaacatggatcgaaggccccgccgtgtctttgaa 319 |||||| || ||||||||||| || ||||||||||| |||||||||||||||||||| || Sbjct: 19932118 tgtgattgtagcgagcatcttaataagaacatggatggaaggccccgccgtgtctttaaa 19932177 Query: 320 tggatctccaacc 332 ||||||||||||| Sbjct: 19932178 tggatctccaacc 19932190 Score = 77.8 bits (39), Expect = 2e-11 Identities = 48/51 (94%) Strand = Plus / Plus Query: 332 cgtatcaccagtaattgcagccttgtgagcctcactgcctttaccaccaag 382 |||||||||||||| |||||||||||||| |||||||||||| |||||||| Sbjct: 19932561 cgtatcaccagtaactgcagccttgtgagactcactgcctttgccaccaag 19932611
>dbj|AP004753.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0508B05 Length = 166165 Score = 97.6 bits (49), Expect = 3e-17 Identities = 67/73 (91%) Strand = Plus / Plus Query: 260 tgtgatcgtggcgagcatcttgatgagaacatggatcgaaggccccgccgtgtctttgaa 319 |||||| || ||||||||||| || ||||||||||| |||||||||||||||||||| || Sbjct: 109719 tgtgattgtagcgagcatcttaataagaacatggatggaaggccccgccgtgtctttaaa 109778 Query: 320 tggatctccaacc 332 ||||||||||||| Sbjct: 109779 tggatctccaacc 109791 Score = 77.8 bits (39), Expect = 2e-11 Identities = 48/51 (94%) Strand = Plus / Plus Query: 332 cgtatcaccagtaattgcagccttgtgagcctcactgcctttaccaccaag 382 |||||||||||||| |||||||||||||| |||||||||||| |||||||| Sbjct: 110162 cgtatcaccagtaactgcagccttgtgagactcactgcctttgccaccaag 110212
>dbj|AP005609.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0014M17 Length = 156778 Score = 97.6 bits (49), Expect = 3e-17 Identities = 67/73 (91%) Strand = Plus / Plus Query: 260 tgtgatcgtggcgagcatcttgatgagaacatggatcgaaggccccgccgtgtctttgaa 319 |||||| || ||||||||||| || ||||||||||| |||||||||||||||||||| || Sbjct: 36239 tgtgattgtagcgagcatcttaataagaacatggatggaaggccccgccgtgtctttaaa 36298 Query: 320 tggatctccaacc 332 ||||||||||||| Sbjct: 36299 tggatctccaacc 36311 Score = 77.8 bits (39), Expect = 2e-11 Identities = 48/51 (94%) Strand = Plus / Plus Query: 332 cgtatcaccagtaattgcagccttgtgagcctcactgcctttaccaccaag 382 |||||||||||||| |||||||||||||| |||||||||||| |||||||| Sbjct: 36682 cgtatcaccagtaactgcagccttgtgagactcactgcctttgccaccaag 36732
>emb|BX817279.1|CNS0AB7C Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL10ZC09 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 508 Score = 58.0 bits (29), Expect = 2e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 309 gtgtctttgaatggatctccaaccgtatcaccagtaattgcagccttgtgagcctcactg 368 ||||| ||||| |||||||| || ||||||||||||| || || |||||||| ||||| Sbjct: 237 gtgtccttgaacggatctcccacggtatcaccagtaacagctgctttgtgagcttcactt 178 Query: 369 cctttaccaccaagtgc 385 ||||| || |||||||| Sbjct: 177 cctttgcccccaagtgc 161
>ref|NM_101539.1| Arabidopsis thaliana AVPL1 (VACUOLAR-PYROPHOSPHATASE LIKE PROTEIN 1) AT1G16780 (AVPL1) mRNA, complete cds Length = 2578 Score = 56.0 bits (28), Expect = 9e-05 Identities = 97/120 (80%) Strand = Plus / Minus Query: 239 aaagatcggagctatgaccagtgtgatcgtggcgagcatcttgatgagaacatggatcga 298 |||||| ||||| ||||| || ||||| || || | ||| ||||||||||| || ||||| Sbjct: 2403 aaagataggagccatgacaagcgtgatagtcgccaacattttgatgagaacgtgaatcga 2344 Query: 299 aggccccgccgtgtctttgaatggatctccaaccgtatcaccagtaattgcagccttgtg 358 || || || ||||| ||||| || ||||| || ||||||||||| | |||||| ||||| Sbjct: 2343 cggtcctgctgtgtccttgaaagggtctcccacagtatcaccagttactgcagctttgtg 2284
>gb|AE011990.1| Xanthomonas axonopodis pv. citri str. 306, section 368 of 469 of the complete genome Length = 12292 Score = 52.0 bits (26), Expect = 0.001 Identities = 62/74 (83%) Strand = Plus / Minus Query: 300 ggccccgccgtgtctttgaatggatctccaaccgtatcaccagtaattgcagccttgtga 359 |||||||| ||||||||| |||| || || || || || || ||||| ||||||||||| Sbjct: 5182 ggccccgcggtgtctttgtatgggtcaccgactgtgtcgccggtaatcgcagccttgtgc 5123 Query: 360 gcctcactgccttt 373 ||||| |||||||| Sbjct: 5122 gcctcgctgccttt 5109
>ref|NM_106541.2| Arabidopsis thaliana AVP2 AT1G78920 (AVP2) mRNA, complete cds Length = 3082 Score = 50.1 bits (25), Expect = 0.005 Identities = 64/77 (83%) Strand = Plus / Minus Query: 309 gtgtctttgaatggatctccaaccgtatcaccagtaattgcagccttgtgagcctcactg 368 ||||| ||||| |||||||| || ||||||||||| | || || |||||||| ||||| Sbjct: 2786 gtgtccttgaacggatctcccacggtatcaccagtcacagctgctttgtgagcttcactt 2727 Query: 369 cctttaccaccaagtgc 385 ||||| || |||||||| Sbjct: 2726 cctttgcccccaagtgc 2710
>gb|BT010353.1| Arabidopsis thaliana At1g78920 mRNA, complete cds Length = 2409 Score = 50.1 bits (25), Expect = 0.005 Identities = 64/77 (83%) Strand = Plus / Minus Query: 309 gtgtctttgaatggatctccaaccgtatcaccagtaattgcagccttgtgagcctcactg 368 ||||| ||||| |||||||| || ||||||||||| | || || |||||||| ||||| Sbjct: 2333 gtgtccttgaacggatctcccacggtatcaccagtcacagctgctttgtgagcttcactt 2274 Query: 369 cctttaccaccaagtgc 385 ||||| || |||||||| Sbjct: 2273 cctttgcccccaagtgc 2257
>dbj|AK220927.1| Arabidopsis thaliana mRNA for vacuolar-pyrophosphatase like protein, complete cds, clone: RAFL22-50-C13 Length = 1137 Score = 50.1 bits (25), Expect = 0.005 Identities = 64/77 (83%) Strand = Plus / Minus Query: 309 gtgtctttgaatggatctccaaccgtatcaccagtaattgcagccttgtgagcctcactg 368 ||||| ||||| |||||||| || ||||||||||| | || || |||||||| ||||| Sbjct: 832 gtgtccttgaacggatctcccacggtatcaccagtcacagctgctttgtgagcttcactt 773 Query: 369 cctttaccaccaagtgc 385 ||||| || |||||||| Sbjct: 772 cctttgcccccaagtgc 756
>gb|AY054485.1| Arabidopsis thaliana Similar to vacuolar H+-pyrophosphatase (At1g78920; F9K20.2) mRNA, complete cds Length = 3080 Score = 50.1 bits (25), Expect = 0.005 Identities = 64/77 (83%) Strand = Plus / Minus Query: 309 gtgtctttgaatggatctccaaccgtatcaccagtaattgcagccttgtgagcctcactg 368 ||||| ||||| |||||||| || ||||||||||| | || || |||||||| ||||| Sbjct: 2784 gtgtccttgaacggatctcccacggtatcaccagtcacagctgctttgtgagcttcactt 2725 Query: 369 cctttaccaccaagtgc 385 ||||| || |||||||| Sbjct: 2724 cctttgcccccaagtgc 2708
>emb|BX815888.1|CNS0ABNT Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH15ZB05 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 567 Score = 50.1 bits (25), Expect = 0.005 Identities = 64/77 (83%) Strand = Plus / Minus Query: 309 gtgtctttgaatggatctccaaccgtatcaccagtaattgcagccttgtgagcctcactg 368 ||||| ||||| |||||||| || ||||||||||| | || || |||||||| ||||| Sbjct: 282 gtgtccttgaacggatctcccacggtatcaccagtcacagctgctttgtgagcttcactt 223 Query: 369 cctttaccaccaagtgc 385 ||||| || |||||||| Sbjct: 222 cctttgcccccaagtgc 206
>emb|BX816636.1|CNS0AAKC Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH5ZE09 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 3011 Score = 50.1 bits (25), Expect = 0.005 Identities = 64/77 (83%) Strand = Plus / Minus Query: 309 gtgtctttgaatggatctccaaccgtatcaccagtaattgcagccttgtgagcctcactg 368 ||||| ||||| |||||||| || ||||||||||| | || || |||||||| ||||| Sbjct: 2759 gtgtccttgaacggatctcccacggtatcaccagtcacagctgctttgtgagcttcactt 2700 Query: 369 cctttaccaccaagtgc 385 ||||| || |||||||| Sbjct: 2699 cctttgcccccaagtgc 2683
>gb|AF182813.1|AF182813 Arabidopsis thaliana vacuolar-type H+-translocating inorganic pyrophosphatase (AVP2) mRNA, complete cds Length = 2403 Score = 50.1 bits (25), Expect = 0.005 Identities = 64/77 (83%) Strand = Plus / Minus Query: 309 gtgtctttgaatggatctccaaccgtatcaccagtaattgcagccttgtgagcctcactg 368 ||||| ||||| |||||||| || ||||||||||| | || || |||||||| ||||| Sbjct: 2327 gtgtccttgaacggatctcccacggtatcaccagtcacagctgctttgtgagcttcactt 2268 Query: 369 cctttaccaccaagtgc 385 ||||| || |||||||| Sbjct: 2267 cctttgcccccaagtgc 2251
>dbj|AB034696.1| Arabidopsis thaliana AVPL1 mRNA for vacuolar-pyrophosphatase like protein, complete cds Length = 2991 Score = 50.1 bits (25), Expect = 0.005 Identities = 64/77 (83%) Strand = Plus / Minus Query: 309 gtgtctttgaatggatctccaaccgtatcaccagtaattgcagccttgtgagcctcactg 368 ||||| ||||| |||||||| || ||||||||||| | || || |||||||| ||||| Sbjct: 2704 gtgtccttgaacggatctcccacggtatcaccagtcacagctgctttgtgagcttcactt 2645 Query: 369 cctttaccaccaagtgc 385 ||||| || |||||||| Sbjct: 2644 cctttgcccccaagtgc 2628
>dbj|D88820.1| Acetabularia mediterranea mRNA for inorganic pyrophosphatase, complete cds Length = 3104 Score = 44.1 bits (22), Expect = 0.33 Identities = 28/30 (93%) Strand = Plus / Minus Query: 312 tctttgaatggatctccaaccgtatcacca 341 |||||||||||||| ||||| ||||||||| Sbjct: 2881 tctttgaatggatcaccaacggtatcacca 2852
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 42.1 bits (21), Expect = 1.3 Identities = 39/45 (86%) Strand = Plus / Minus Query: 293 gatcgaaggccccgccgtgtctttgaatggatctccaaccgtatc 337 ||||||||| || || ||||| |||||||||||||| || ||||| Sbjct: 5138620 gatcgaagggccggcggtgtccttgaatggatctcccacggtatc 5138576
>gb|AC157991.5| Mus musculus chromosome 18, clone RP23-335B10, complete sequence Length = 198636 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 tctgtcacagcatatatatt 35 |||||||||||||||||||| Sbjct: 190345 tctgtcacagcatatatatt 190364
>gb|AC102155.10| Mus musculus chromosome 18, clone RP23-334J12, complete sequence Length = 189666 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 tctgtcacagcatatatatt 35 |||||||||||||||||||| Sbjct: 108288 tctgtcacagcatatatatt 108269
>gb|AC116130.15| Mus musculus chromosome 17, clone RP23-98F21, complete sequence Length = 228842 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 ctgcctttaccaccaagtgc 385 |||||||||||||||||||| Sbjct: 126443 ctgcctttaccaccaagtgc 126462
>gb|AC153972.6| Mus musculus 10 BAC RP24-383P4 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 182933 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 cactgcctttaccaccaagt 383 |||||||||||||||||||| Sbjct: 174810 cactgcctttaccaccaagt 174829
>gb|AC132608.2| Mus musculus BAC clone RP23-451E12 from chromosome 18, complete sequence Length = 201478 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 tctgtcacagcatatatatt 35 |||||||||||||||||||| Sbjct: 185109 tctgtcacagcatatatatt 185090
>emb|AL031687.17|HS998H6 Human DNA sequence from clone RP5-998H6 on chromosome 20q13.1 Contains the CDH22 gene for cadherin-like 22, a novel gene and two CpG islands, complete sequence Length = 147815 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 334 tatcaccagtaattgcagcc 353 |||||||||||||||||||| Sbjct: 66314 tatcaccagtaattgcagcc 66295
>gb|AC067747.7| Homo sapiens chromosome 10 clone RP11-406H21, complete sequence Length = 147280 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 tgaacctctcctttcaatgg 124 |||||||||||||||||||| Sbjct: 50030 tgaacctctcctttcaatgg 50011
>dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138 Length = 504369 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 294 atcgaaggccccgccgtgtctttg 317 |||||||||||| ||||||||||| Sbjct: 171830 atcgaaggcccctccgtgtctttg 171807
>gb|AC159504.5| Mus musculus 10 BAC RP23-302J6 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 201259 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 cactgcctttaccaccaagt 383 |||||||||||||||||||| Sbjct: 64673 cactgcctttaccaccaagt 64692
>gb|AF243083.1|F243081S03 Homo sapiens intrinsic factor-vitamin B12 receptor (CUBN) gene, exons 5 and 6 Length = 1728 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 tgaacctctcctttcaatgg 124 |||||||||||||||||||| Sbjct: 440 tgaacctctcctttcaatgg 421
>gb|AF532114.1| Mus musculus strain 129/SvJ BAC clone citb544e14 from the MHC region, complete sequence Length = 153869 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 366 ctgcctttaccaccaagtgc 385 |||||||||||||||||||| Sbjct: 101412 ctgcctttaccaccaagtgc 101393
>gb|AC069275.3|AC069275 Homo sapiens chromosome 3 clone RP11-194C9 map 3p, complete sequence Length = 151142 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 tgtcacagcatatatattct 37 |||||||||||||||||||| Sbjct: 91041 tgtcacagcatatatattct 91060
>gb|AC023472.4|AC023472 Homo sapiens chromosome 3 clone RP11-156B21 map 3p, complete sequence Length = 167220 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 tgtcacagcatatatattct 37 |||||||||||||||||||| Sbjct: 54326 tgtcacagcatatatattct 54345
>gb|AC104098.5| Mus musculus BAC clone RP24-372H3 from 5, complete sequence Length = 180886 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 346 ttgcagccttgtgagcctca 365 |||||||||||||||||||| Sbjct: 127489 ttgcagccttgtgagcctca 127508
>gb|AC069276.4| Homo sapiens chromosome 3 clone RP11-470E10 map 3p, complete sequence Length = 184058 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 tgtcacagcatatatattct 37 |||||||||||||||||||| Sbjct: 11455 tgtcacagcatatatattct 11436
>gb|AC018832.5| Homo sapiens chromosome 3 clone RP11-481O7 map 3p, complete sequence Length = 185496 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 tgtcacagcatatatattct 37 |||||||||||||||||||| Sbjct: 19991 tgtcacagcatatatattct 20010 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,837,601 Number of Sequences: 3902068 Number of extensions: 2837601 Number of successful extensions: 51054 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 51000 Number of HSP's gapped (non-prelim): 58 length of query: 386 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 364 effective length of database: 17,147,199,772 effective search space: 6241580717008 effective search space used: 6241580717008 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)