ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl32f02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY596586.1| Saccharum officinarum clone SCCCRZ2002H08, comple... 90 7e-15
2ref|XM_463541.1| Oryza sativa (japonica cultivar-group), predic... 82 2e-12
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
4dbj|AP003561.2| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
5dbj|AK119636.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 2e-12
6dbj|AK100713.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 2e-12
7gb|AY104480.1| Zea mays PCO099563 mRNA sequence 82 2e-12
8emb|CT009521.5| M.truncatula DNA sequence from clone MTH2-81E13 ... 54 4e-04
9emb|BX248137.9| Zebrafish DNA sequence from clone DKEY-19L19, co... 44 0.39
10gb|AC169379.4| Sorghum bicolor clone SB_BBc0088B22, complete seq... 44 0.39
11gb|AC121264.8| Mus musculus chromosome 9, clone RP24-233F22, com... 42 1.5
12emb|CR940310.6| M.truncatula DNA sequence from clone MTH2-5D8 on... 42 1.5
13gb|AC003119.1|HUAC003119 Human Chromosome 16 BAC clone CIT987SK-... 42 1.5
14emb|X89383.1|RNSNF1KIN R.norvegicus mRNA for SNF1-related kinase 42 1.5
15gb|AF387809.2| Mus musculus strain BALB/c SNF-1 related kinase (... 42 1.5
16gb|AC162794.4| Mus musculus chromosome 3, clone RP24-120B22, com... 42 1.5
17gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 42 1.5
18dbj|AK053203.1| Mus musculus 0 day neonate lung cDNA, RIKEN full... 42 1.5
19gb|BC094658.1| Mus musculus SNF related kinase, mRNA (cDNA clone... 42 1.5
20ref|NM_138833.1| Rattus norvegicus SNF related kinase (Snrk), mRNA 42 1.5
21ref|XM_579653.1| PREDICTED: Rattus norvegicus hypothetical LOC36... 42 1.5
22ref|XM_579652.1| PREDICTED: Rattus norvegicus SNF related kinase... 42 1.5
23dbj|AK211321.1| Mus musculus cDNA, clone:Y2G0121F20, strand:minu... 42 1.5
24ref|NM_212200.1| Eremothecium gossypii AFR517Cp (AFR517C), mRNA 42 1.5
25gb|BC020189.1| Mus musculus SNF related kinase, mRNA (cDNA clone... 42 1.5
26ref|NM_133741.1| Mus musculus SNF related kinase (Snrk), mRNA 42 1.5
27gb|AC120394.10| Mus musculus chromosome 9, clone RP24-325N9, com... 42 1.5
28gb|AC104930.9| Mus musculus chromosome 7, clone RP24-224C21, com... 40 6.1
29gb|AY347745.1| Physcomitrella patens Snf1 related kinase 1 (SNF1... 40 6.1
30ref|XM_993959.1| PREDICTED: Mus musculus golgi autoantigen, golg... 40 6.1
31ref|XM_001001861.1| PREDICTED: Mus musculus golgi autoantigen, g... 40 6.1
32ref|XM_916950.2| PREDICTED: Mus musculus golgi autoantigen, golg... 40 6.1
33ref|XM_901689.2| PREDICTED: Mus musculus golgi autoantigen, golg... 40 6.1
34ref|XM_148244.7| PREDICTED: Mus musculus golgi autoantigen, golg... 40 6.1
35ref|XM_901694.2| PREDICTED: Mus musculus golgi autoantigen, golg... 40 6.1
36emb|CR382370.13| Zebrafish DNA sequence from clone DKEY-22O12 in... 40 6.1
37emb|CR388412.9| Zebrafish DNA sequence from clone CH211-69G13 in... 40 6.1
38emb|AL590240.5| Human DNA sequence from clone RP11-266I3 on chro... 40 6.1
39emb|AL513082.10| Human DNA sequence from clone RP11-229N15 on ch... 40 6.1
40emb|BX908783.8| Zebrafish DNA sequence from clone DKEY-86M2 in l... 40 6.1
41emb|BX323796.14| Zebrafish DNA sequence from clone DKEY-106N21 i... 40 6.1
42emb|BX649627.10| Zebrafish DNA sequence from clone DKEY-78B7 in ... 40 6.1
43emb|BX511176.6| Zebrafish DNA sequence from clone CH211-8C17 in ... 40 6.1
44gb|AC154763.2| Mus musculus BAC clone RP24-422J16 from chromosom... 40 6.1
45emb|CR556722.7| Zebrafish DNA sequence from clone CH211-195N12 i... 40 6.1
46emb|BX000435.21| Zebrafish DNA sequence from clone DKEY-12L8 in ... 40 6.1
47gb|AC020906.6| Homo sapiens chromosome 19 clone CTB-83J15, compl... 40 6.1
48gb|AC150559.31| Medicago truncatula clone mth2-67j8, complete se... 40 6.1
49emb|AL935031.12| Zebrafish DNA sequence from clone CH211-93I23, ... 40 6.1
50emb|BX640577.17| Zebrafish DNA sequence from clone DKEY-117O14 i... 40 6.1
51gb|AC090573.6| Homo sapiens chromosome 8, clone RP11-440B23, com... 40 6.1
52dbj|AK155415.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 40 6.1
53gb|AC023034.9| Homo sapiens, clone RP11-499F3, complete sequence 40 6.1
54gb|AC155930.3| Mus musculus BAC clone RP23-412K9 from chromosome... 40 6.1
55dbj|AK020091.1| Mus musculus adult male medulla oblongata cDNA, ... 40 6.1
56gb|AC008394.3|AC008394 Homo sapiens chromosome 5 clone CTC_242N1... 40 6.1
57emb|BX000536.7| Zebrafish DNA sequence from clone CH211-10C6 in ... 40 6.1
58dbj|AB025638.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 6.1
59gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome 40 6.1
60emb|BX842613.7| Zebrafish DNA sequence from clone CH211-227J9 in... 40 6.1
61emb|BX004885.4| Zebrafish DNA sequence from clone CH211-103L6, c... 40 6.1
62gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 6.1
63emb|CR762424.33| Zebrafish DNA sequence from clone RP71-52E8 in ... 40 6.1 
>gb|AY596586.1| Saccharum officinarum clone SCCCRZ2002H08, complete sequence
          Length = 2841

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 81/93 (87%)
 Strand = Plus / Minus

                                                                        
Query: 359  tgggccgccacgtggtcttctggacgcagagcagcccttccttgcccgtggcgtaggtca 418
            ||||||||||| | | ||||| |||||||||||  || || |||||| ||| ||||||||
Sbjct: 2577 tgggccgccacatcgacttctcgacgcagagcaagccctcgttgcccttggtgtaggtca 2518

                                             
Query: 419  tgcgcacctcccactgcagggacttcgccatgc 451
            | ||||||||||||||||||||||| |||||||
Sbjct: 2517 ttcgcacctcccactgcagggacttggccatgc 2485
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>ref|XM_463541.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2421

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 98/117 (83%)
 Strand = Plus / Minus

                                                                        
Query: 338  acatgcttgcttcgatctccctgggccgccacgtggtcttctggacgcagagcagccctt 397
            |||||||||| ||||||||| ||||||||||| ||| ||| ||||| || || || || |
Sbjct: 2419 acatgcttgcctcgatctccttgggccgccacatggacttttggacacatagaagaccct 2360

                                                                     
Query: 398  ccttgcccgtggcgtaggtcatgcgcacctcccactgcagggacttcgccatgcctt 454
            | || ||| ||| |||||||||||| ||||||||||| || |||||  |||||||||
Sbjct: 2359 cgttacccttggtgtaggtcatgcgaacctcccactgaagcgactttaccatgcctt 2303
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 98/117 (83%)
 Strand = Plus / Plus

                                                                            
Query: 338      acatgcttgcttcgatctccctgggccgccacgtggtcttctggacgcagagcagccctt 397
                |||||||||| ||||||||| ||||||||||| ||| ||| ||||| || || || || |
Sbjct: 38379953 acatgcttgcctcgatctccttgggccgccacatggacttttggacacatagaagaccct 38380012

                                                                         
Query: 398      ccttgcccgtggcgtaggtcatgcgcacctcccactgcagggacttcgccatgcctt 454
                | || ||| ||| |||||||||||| ||||||||||| || |||||  |||||||||
Sbjct: 38380013 cgttacccttggtgtaggtcatgcgaacctcccactgaagcgactttaccatgcctt 38380069
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>dbj|AP003561.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1065E10
          Length = 183580

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 98/117 (83%)
 Strand = Plus / Plus

                                                                          
Query: 338    acatgcttgcttcgatctccctgggccgccacgtggtcttctggacgcagagcagccctt 397
              |||||||||| ||||||||| ||||||||||| ||| ||| ||||| || || || || |
Sbjct: 140778 acatgcttgcctcgatctccttgggccgccacatggacttttggacacatagaagaccct 140837

                                                                       
Query: 398    ccttgcccgtggcgtaggtcatgcgcacctcccactgcagggacttcgccatgcctt 454
              | || ||| ||| |||||||||||| ||||||||||| || |||||  |||||||||
Sbjct: 140838 cgttacccttggtgtaggtcatgcgaacctcccactgaagcgactttaccatgcctt 140894
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>dbj|AK119636.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-F03, full
            insert sequence
          Length = 2826

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 98/117 (83%)
 Strand = Plus / Minus

                                                                        
Query: 338  acatgcttgcttcgatctccctgggccgccacgtggtcttctggacgcagagcagccctt 397
            |||||||||| ||||||||| ||||||||||| ||| ||| ||||| || || || || |
Sbjct: 2557 acatgcttgcctcgatctccttgggccgccacatggacttttggacacatagaagaccct 2498

                                                                     
Query: 398  ccttgcccgtggcgtaggtcatgcgcacctcccactgcagggacttcgccatgcctt 454
            | || ||| ||| |||||||||||| ||||||||||| || |||||  |||||||||
Sbjct: 2497 cgttacccttggtgtaggtcatgcgaacctcccactgaagcgactttaccatgcctt 2441
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>dbj|AK100713.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023115H24, full
            insert sequence
          Length = 2988

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 98/117 (83%)
 Strand = Plus / Minus

                                                                        
Query: 338  acatgcttgcttcgatctccctgggccgccacgtggtcttctggacgcagagcagccctt 397
            |||||||||| ||||||||| ||||||||||| ||| ||| ||||| || || || || |
Sbjct: 2723 acatgcttgcctcgatctccttgggccgccacatggacttttggacacatagaagaccct 2664

                                                                     
Query: 398  ccttgcccgtggcgtaggtcatgcgcacctcccactgcagggacttcgccatgcctt 454
            | || ||| ||| |||||||||||| ||||||||||| || |||||  |||||||||
Sbjct: 2663 cgttacccttggtgtaggtcatgcgaacctcccactgaagcgactttaccatgcctt 2607
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>gb|AY104480.1| Zea mays PCO099563 mRNA sequence
          Length = 2194

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 80/93 (86%)
 Strand = Plus / Minus

                                                                        
Query: 359  tgggccgccacgtggtcttctggacgcagagcagcccttccttgcccgtggcgtaggtca 418
            ||||||||||| | | ||||| |||||||||||| || ||  ||||| ||| ||||||||
Sbjct: 1882 tgggccgccacatcgacttctcgacgcagagcaggccctcgctgcccttggtgtaggtca 1823

                                             
Query: 419  tgcgcacctcccactgcagggacttcgccatgc 451
            | |||||||||||||||| |||||| |||||||
Sbjct: 1822 tccgcacctcccactgcacggacttggccatgc 1790
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>emb|CT009521.5| M.truncatula DNA sequence from clone MTH2-81E13 on chromosome 3,
             complete sequence
          Length = 56728

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 69/83 (83%)
 Strand = Plus / Minus

                                                                         
Query: 361   ggccgccacgtggtcttctggacgcagagcagcccttccttgcccgtggcgtaggtcatg 420
             |||||||| |||| ||||||||| || | ||  || |||||  || ||| ||||||||||
Sbjct: 16445 ggccgccaggtggacttctggacacataacaaaccctccttatccttggagtaggtcatg 16386

                                    
Query: 421   cgcacctcccactgcagggactt 443
             || ||||||||||||| ||||||
Sbjct: 16385 cgaacctcccactgcatggactt 16363
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>emb|BX248137.9| Zebrafish DNA sequence from clone DKEY-19L19, complete sequence
          Length = 209896

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 145    cattacattcattttacaacaaatgt 170
              |||| |||||||||||||||||||||
Sbjct: 176545 catttcattcattttacaacaaatgt 176520
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>gb|AC169379.4| Sorghum bicolor clone SB_BBc0088B22, complete sequence
          Length = 105215

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 349   tcgatctccctgggccgccacgtggtcttc 378
             ||||||||| ||||||||||||| ||||||
Sbjct: 95322 tcgatctccgtgggccgccacgtcgtcttc 95293
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>gb|AC121264.8| Mus musculus chromosome 9, clone RP24-233F22, complete sequence
          Length = 194261

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 383   cgcagagcagcccttccttgc 403
             |||||||||||||||||||||
Sbjct: 40255 cgcagagcagcccttccttgc 40235
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>emb|CR940310.6| M.truncatula DNA sequence from clone MTH2-5D8 on chromosome 3, complete
             sequence
          Length = 121689

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 200   gaaaaacacatacatgattctacag 224
             ||||||||||| |||||||||||||
Sbjct: 37638 gaaaaacacattcatgattctacag 37614
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>gb|AC003119.1|HUAC003119 Human Chromosome 16 BAC clone CIT987SK-27D10, complete sequence
          Length = 88036

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 173   tccaagcaaaagaaagaatga 193
             |||||||||||||||||||||
Sbjct: 23224 tccaagcaaaagaaagaatga 23204
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>emb|X89383.1|RNSNF1KIN R.norvegicus mRNA for SNF1-related kinase
          Length = 3004

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 383  cgcagagcagcccttccttgc 403
            |||||||||||||||||||||
Sbjct: 2355 cgcagagcagcccttccttgc 2335
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>gb|AF387809.2| Mus musculus strain BALB/c SNF-1 related kinase (Snrk) mRNA, complete
            cds
          Length = 4708

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 383  cgcagagcagcccttccttgc 403
            |||||||||||||||||||||
Sbjct: 2360 cgcagagcagcccttccttgc 2340
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>gb|AC162794.4| Mus musculus chromosome 3, clone RP24-120B22, complete sequence
          Length = 139773

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 176   aagcaaaagaaagaatgaaag 196
             |||||||||||||||||||||
Sbjct: 81804 aagcaaaagaaagaatgaaag 81784
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>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI,
               complete sequence
          Length = 1813164

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 176     aagcaaaagaaagaatgaaaggccgaaaa 204
               ||||||||||||||| |||||||| ||||
Sbjct: 1363005 aagcaaaagaaagaaagaaaggccaaaaa 1362977
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>dbj|AK053203.1| Mus musculus 0 day neonate lung cDNA, RIKEN full-length enriched
            library, clone:E030034B15 product:SNF-1 RELATED KINASE
            homolog [Mus musculus], full insert sequence
          Length = 1992

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 383  cgcagagcagcccttccttgc 403
            |||||||||||||||||||||
Sbjct: 1315 cgcagagcagcccttccttgc 1295
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>gb|BC094658.1| Mus musculus SNF related kinase, mRNA (cDNA clone MGC:101984
            IMAGE:5721174), complete cds
          Length = 4740

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 383  cgcagagcagcccttccttgc 403
            |||||||||||||||||||||
Sbjct: 2388 cgcagagcagcccttccttgc 2368
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>ref|NM_138833.1| Rattus norvegicus SNF related kinase (Snrk), mRNA
          Length = 3004

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 383  cgcagagcagcccttccttgc 403
            |||||||||||||||||||||
Sbjct: 2355 cgcagagcagcccttccttgc 2335
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>ref|XM_579653.1| PREDICTED: Rattus norvegicus hypothetical LOC367880 (LOC367880), mRNA
          Length = 2806

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 383  cgcagagcagcccttccttgc 403
            |||||||||||||||||||||
Sbjct: 2160 cgcagagcagcccttccttgc 2140
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>ref|XM_579652.1| PREDICTED: Rattus norvegicus SNF related kinase (Snrk), mRNA
          Length = 2270

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 383  cgcagagcagcccttccttgc 403
            |||||||||||||||||||||
Sbjct: 1621 cgcagagcagcccttccttgc 1601
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>dbj|AK211321.1| Mus musculus cDNA, clone:Y2G0121F20, strand:minus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000063498, based on BLAT search
          Length = 400

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 383 cgcagagcagcccttccttgc 403
           |||||||||||||||||||||
Sbjct: 99  cgcagagcagcccttccttgc 79
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>ref|NM_212200.1| Eremothecium gossypii AFR517Cp (AFR517C), mRNA
          Length = 2616

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 176  aagcaaaagaaagaatgaaaggccgaaaa 204
            ||||||||||||||| |||||||| ||||
Sbjct: 1333 aagcaaaagaaagaaagaaaggccaaaaa 1361
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>gb|BC020189.1| Mus musculus SNF related kinase, mRNA (cDNA clone MGC:28970
            IMAGE:4482701), complete cds
          Length = 3101

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 383  cgcagagcagcccttccttgc 403
            |||||||||||||||||||||
Sbjct: 2402 cgcagagcagcccttccttgc 2382
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>ref|NM_133741.1| Mus musculus SNF related kinase (Snrk), mRNA
          Length = 4708

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 383  cgcagagcagcccttccttgc 403
            |||||||||||||||||||||
Sbjct: 2360 cgcagagcagcccttccttgc 2340
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>gb|AC120394.10| Mus musculus chromosome 9, clone RP24-325N9, complete sequence
          Length = 206641

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 383    cgcagagcagcccttccttgc 403
              |||||||||||||||||||||
Sbjct: 184055 cgcagagcagcccttccttgc 184035
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>gb|AC104930.9| Mus musculus chromosome 7, clone RP24-224C21, complete sequence
          Length = 156052

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 372   ggtcttctggacgcagagcagccc 395
             |||||||||||| |||||||||||
Sbjct: 34857 ggtcttctggacacagagcagccc 34880
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>gb|AY347745.1| Physcomitrella patens Snf1 related kinase 1 (SNF1b) gene, complete
            cds
          Length = 5107

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 154  cattttacaacaaatgttgtccaa 177
            |||||||||| |||||||||||||
Sbjct: 2937 cattttacaagaaatgttgtccaa 2914
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>ref|XM_993959.1| PREDICTED: Mus musculus golgi autoantigen, golgin subfamily b,
           macrogolgin 1 (Golgb1), mRNA
          Length = 10907

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 375 cttctggacgcagagcagcccttccttg 402
           |||||||| |||||||||||| ||||||
Sbjct: 475 cttctggaggcagagcagcccctccttg 448
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>ref|XM_001001861.1| PREDICTED: Mus musculus golgi autoantigen, golgin subfamily b,
            macrogolgin 1, transcript variant 9 (Golgb1), mRNA
          Length = 13115

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 375  cttctggacgcagagcagcccttccttg 402
            |||||||| |||||||||||| ||||||
Sbjct: 2770 cttctggaggcagagcagcccctccttg 2743
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>ref|XM_916950.2| PREDICTED: Mus musculus golgi autoantigen, golgin subfamily b,
           macrogolgin 1, transcript variant 7 (Golgb1), mRNA
          Length = 10927

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 375 cttctggacgcagagcagcccttccttg 402
           |||||||| |||||||||||| ||||||
Sbjct: 582 cttctggaggcagagcagcccctccttg 555
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>ref|XM_901689.2| PREDICTED: Mus musculus golgi autoantigen, golgin subfamily b,
           macrogolgin 1, transcript variant 4 (Golgb1), mRNA
          Length = 11008

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 375 cttctggacgcagagcagcccttccttg 402
           |||||||| |||||||||||| ||||||
Sbjct: 576 cttctggaggcagagcagcccctccttg 549
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>ref|XM_148244.7| PREDICTED: Mus musculus golgi autoantigen, golgin subfamily b,
           macrogolgin 1, transcript variant 1 (Golgb1), mRNA
          Length = 11104

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 375 cttctggacgcagagcagcccttccttg 402
           |||||||| |||||||||||| ||||||
Sbjct: 672 cttctggaggcagagcagcccctccttg 645
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>ref|XM_901694.2| PREDICTED: Mus musculus golgi autoantigen, golgin subfamily b,
           macrogolgin 1, transcript variant 6 (Golgb1), mRNA
          Length = 10907

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 375 cttctggacgcagagcagcccttccttg 402
           |||||||| |||||||||||| ||||||
Sbjct: 475 cttctggaggcagagcagcccctccttg 448
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>emb|CR382370.13| Zebrafish DNA sequence from clone DKEY-22O12 in linkage group 1, complete
              sequence
          Length = 257504

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 134    ttacagtacagcattacatt 153
              ||||||||||||||||||||
Sbjct: 229746 ttacagtacagcattacatt 229765
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>emb|CR388412.9| Zebrafish DNA sequence from clone CH211-69G13 in linkage group 5,
             complete sequence
          Length = 158289

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 134   ttacagtacagcattacatt 153
             ||||||||||||||||||||
Sbjct: 45457 ttacagtacagcattacatt 45438
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>emb|AL590240.5| Human DNA sequence from clone RP11-266I3 on chromosome X Contains a
            likely ortholog of mouse hepatoma-derived growth factor
            related protein 3 pseudogene (HDGFRP3), a novel protein
            similar to PAGE-5 protein (LOC203569), a novel protein
            similar to PAGE-5 protein (LOC139795), gene FLJ20434, a
            cytochrome c oxidase I (MTCO1) pseudogene, a G antigen,
            family D pseudogene and a CpG island, complete sequence
          Length = 130005

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 176  aagcaaaagaaagaatgaaa 195
            ||||||||||||||||||||
Sbjct: 6596 aagcaaaagaaagaatgaaa 6577
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>emb|AL513082.10| Human DNA sequence from clone RP11-229N15 on chromosome Xq24-25 Contains
              a ribosomal protein L3 (RPL3) pseudogene, complete sequence
          Length = 137154

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 174    ccaagcaaaagaaagaatga 193
              ||||||||||||||||||||
Sbjct: 103487 ccaagcaaaagaaagaatga 103468
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>emb|BX908783.8| Zebrafish DNA sequence from clone DKEY-86M2 in linkage group 25, complete
              sequence
          Length = 216800

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 134    ttacagtacagcattacatt 153
              ||||||||||||||||||||
Sbjct: 121961 ttacagtacagcattacatt 121980
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>emb|BX323796.14| Zebrafish DNA sequence from clone DKEY-106N21 in linkage group 25,
              complete sequence
          Length = 204383

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 134    ttacagtacagcattacatt 153
              ||||||||||||||||||||
Sbjct: 123959 ttacagtacagcattacatt 123940
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>emb|BX649627.10| Zebrafish DNA sequence from clone DKEY-78B7 in linkage group 3,
             complete sequence
          Length = 92147

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 134   ttacagtacagcattacatt 153
             ||||||||||||||||||||
Sbjct: 80765 ttacagtacagcattacatt 80746
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>emb|BX511176.6| Zebrafish DNA sequence from clone CH211-8C17 in linkage group 3, complete
              sequence
          Length = 116813

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 134    ttacagtacagcattacatt 153
              ||||||||||||||||||||
Sbjct: 103428 ttacagtacagcattacatt 103409
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>gb|AC154763.2| Mus musculus BAC clone RP24-422J16 from chromosome 16, complete
             sequence
          Length = 156818

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 375   cttctggacgcagagcagcccttccttg 402
             |||||||| |||||||||||| ||||||
Sbjct: 21425 cttctggaggcagagcagcccctccttg 21398
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>emb|CR556722.7| Zebrafish DNA sequence from clone CH211-195N12 in linkage group 13,
              complete sequence
          Length = 205873

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 230    caatgcatttgcctttttta 249
              ||||||||||||||||||||
Sbjct: 163844 caatgcatttgcctttttta 163863
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>emb|BX000435.21| Zebrafish DNA sequence from clone DKEY-12L8 in linkage group 1, complete
              sequence
          Length = 201673

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 134    ttacagtacagcattacatt 153
              ||||||||||||||||||||
Sbjct: 153044 ttacagtacagcattacatt 153025
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>gb|AC020906.6| Homo sapiens chromosome 19 clone CTB-83J15, complete sequence
          Length = 110184

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 422   gcacctcccactgcagggac 441
             ||||||||||||||||||||
Sbjct: 32046 gcacctcccactgcagggac 32027
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>gb|AC150559.31| Medicago truncatula clone mth2-67j8, complete sequence
          Length = 107641

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 241   ccttttttagcatcaacaagaatc 264
             ||||||| ||||||||||||||||
Sbjct: 97690 cctttttcagcatcaacaagaatc 97667
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>emb|AL935031.12| Zebrafish DNA sequence from clone CH211-93I23, complete sequence
          Length = 178457

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 230   caatgcatttgcctttttta 249
             ||||||||||||||||||||
Sbjct: 27275 caatgcatttgcctttttta 27294
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>emb|BX640577.17| Zebrafish DNA sequence from clone DKEY-117O14 in linkage group 14,
              complete sequence
          Length = 214178

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 134    ttacagtacagcattacatt 153
              ||||||||||||||||||||
Sbjct: 145384 ttacagtacagcattacatt 145403
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>gb|AC090573.6| Homo sapiens chromosome 8, clone RP11-440B23, complete sequence
          Length = 204032

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 172    gtccaagcaaaagaaagaat 191
              ||||||||||||||||||||
Sbjct: 107036 gtccaagcaaaagaaagaat 107055
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>dbj|AK155415.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630225N06
            product:hypothetical protein, full insert sequence
          Length = 1881

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 375  cttctggacgcagagcagcccttccttg 402
            |||||||| |||||||||||| ||||||
Sbjct: 1828 cttctggaggcagagcagcccctccttg 1801
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>gb|AC023034.9| Homo sapiens, clone RP11-499F3, complete sequence
          Length = 189732

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 177   agcaaaagaaagaatgaaag 196
             ||||||||||||||||||||
Sbjct: 68582 agcaaaagaaagaatgaaag 68601
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>gb|AC155930.3| Mus musculus BAC clone RP23-412K9 from chromosome 7, complete sequence
          Length = 187418

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 372   ggtcttctggacgcagagcagccc 395
             |||||||||||| |||||||||||
Sbjct: 32367 ggtcttctggacacagagcagccc 32344
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>dbj|AK020091.1| Mus musculus adult male medulla oblongata cDNA, RIKEN full-length
           enriched library, clone:6330407A06 product:similar to
           GIANTIN (GOLGI COMPLEX-ASSOCIATED PROTEIN OF 364 KDA)
           (GCP364) [Rattus norvegicus], full insert sequence
          Length = 507

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 375 cttctggacgcagagcagcccttccttg 402
           |||||||| |||||||||||| ||||||
Sbjct: 454 cttctggaggcagagcagcccctccttg 427
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>gb|AC008394.3|AC008394 Homo sapiens chromosome 5 clone CTC_242N15, complete sequence
          Length = 171545

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 217    ttctacagctgcacaatgcatttg 240
              |||||||||||||||||| |||||
Sbjct: 157682 ttctacagctgcacaatgtatttg 157659
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>emb|BX000536.7| Zebrafish DNA sequence from clone CH211-10C6 in linkage group 7,
             complete sequence
          Length = 199752

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 245   ttttagcatcaacaagaatcatgt 268
             |||| |||||||||||||||||||
Sbjct: 47092 ttttggcatcaacaagaatcatgt 47115
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>dbj|AB025638.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MWF20
          Length = 91193

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 176   aagcaaaagaaagaatgaaa 195
             ||||||||||||||||||||
Sbjct: 64454 aagcaaaagaaagaatgaaa 64435
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>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 146    attacattcattttacaacaaatg 169
              |||||||||||||||||| |||||
Sbjct: 381838 attacattcattttacaagaaatg 381861
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>emb|BX842613.7| Zebrafish DNA sequence from clone CH211-227J9 in linkage group 19,
             complete sequence
          Length = 166128

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 134   ttacagtacagcattacatt 153
             ||||||||||||||||||||
Sbjct: 90961 ttacagtacagcattacatt 90942
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>emb|BX004885.4| Zebrafish DNA sequence from clone CH211-103L6, complete sequence
          Length = 187201

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 134   ttacagtacagcattacatt 153
             ||||||||||||||||||||
Sbjct: 39594 ttacagtacagcattacatt 39613
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 413     aggtcatgcgcacctcccac 432
               ||||||||||||||||||||
Sbjct: 2645279 aggtcatgcgcacctcccac 2645298
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>emb|CR762424.33| Zebrafish DNA sequence from clone RP71-52E8 in linkage group 22,
             complete sequence
          Length = 178229

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 134   ttacagtacagcattacatt 153
             ||||||||||||||||||||
Sbjct: 16976 ttacagtacagcattacatt 16995


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,357,896
Number of Sequences: 3902068
Number of extensions: 4357896
Number of successful extensions: 91829
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91665
Number of HSP's gapped (non-prelim): 164
length of query: 454
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 432
effective length of database: 17,147,199,772
effective search space: 7407590301504
effective search space used: 7407590301504
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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