ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl32f01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FRIZ4_DROME (Q9NBW1) Protein frizzled-4 precursor (dFz4) 30 3.4
2TRI38_HUMAN (O00635) Tripartite motif protein 38 (RING finger pr... 29 7.6
3NADD_TREPA (O83723) Probable nicotinate-nucleotide adenylyltrans... 28 9.9

>FRIZ4_DROME (Q9NBW1) Protein frizzled-4 precursor (dFz4)|
          Length = 705

 Score = 30.0 bits (66), Expect = 3.4
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +3

Query: 225 SPVHEIGSPYDSDLNSRVACHPRLRGFHIVIVKAPCYNCER-ARDNRAHTM 374
           +PVH IG       + R+ CHP L+GF       P  +C++  R+N   TM
Sbjct: 111 APVHAIGPCRSLCESVRIRCHPVLQGFG--FPWPPALDCDKFPRENNHETM 159



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>TRI38_HUMAN (O00635) Tripartite motif protein 38 (RING finger protein 15) (Zinc|
           finger protein RoRet)
          Length = 465

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
 Frame = +3

Query: 228 PVHEIGSPYDS--DLNSRVACHPRLRGFHIVIV---KAPCYNCERARDNRAHTMATAEQV 392
           P  ++GS  ++  + +  ++C      FH+      +  C+ CERA  ++ HT A  E V
Sbjct: 73  PNKQLGSLIEALKETDQEMSCEEHGEQFHLFCEDEGQLICWRCERAPQHKGHTTALVEDV 132



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>NADD_TREPA (O83723) Probable nicotinate-nucleotide adenylyltransferase (EC|
           2.7.7.18) (Deamido-NAD(+) pyrophosphorylase)
           (Deamido-NAD(+) diphosphorylase) (Nicotinate
           mononucleotide adenylyltransferase) (NaMN
           adenylyltransferase)
          Length = 204

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 20/68 (29%), Positives = 27/68 (39%)
 Frame = +3

Query: 219 FVSPVHEIGSPYDSDLNSRVACHPRLRGFHIVIVKAPCYNCERARDNRAHTMATAEQVTH 398
           FVSP  E             + H R+R  H+ I   P ++ E     R     TAE V H
Sbjct: 39  FVSPFKE--------KEGSASAHDRVRMLHLAIGTTPYFSVEECEIRRGGISYTAETVQH 90

Query: 399 APSLKHKY 422
              ++ KY
Sbjct: 91  ---VREKY 95


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,423,177
Number of Sequences: 219361
Number of extensions: 1349894
Number of successful extensions: 2660
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2660
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3362826254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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