ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl32e12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY107337.1| Zea mays PCO064147 mRNA sequence 129 7e-27
2emb|AL732345.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 119 7e-24
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 113 4e-22
4dbj|AK102910.1| Oryza sativa (japonica cultivar-group) cDNA clon... 113 4e-22
5emb|AL606651.3|OSJN00092 Oryza sativa genomic DNA, chromosome 4,... 113 4e-22
6ref|XM_474407.1| Oryza sativa (japonica cultivar-group), predic... 107 3e-20
7dbj|AK073897.1| Oryza sativa (japonica cultivar-group) cDNA clon... 105 1e-19
8gb|AY111562.1| Zea mays CL51463_1 mRNA sequence 54 3e-04
9gb|AY104073.1| Zea mays PCO099302 mRNA sequence 54 3e-04
10gb|AC007277.2|AC007277 Homo sapiens BAC clone RP11-244E6 from 2,... 42 1.3
11ref|NM_121300.2| Arabidopsis thaliana unknown protein AT5G12970 ... 40 5.2
12gb|AY842481.1| Homo sapiens growth associated protein 43 (GAP43)... 40 5.2
13gb|AC091455.12| Mus musculus chromosome 1, clone RP23-23O9, comp... 40 5.2
14gb|AC157991.5| Mus musculus chromosome 18, clone RP23-335B10, co... 40 5.2
15gb|AC132914.7| Mus musculus chromosome 1, clone RP24-318M2, comp... 40 5.2
16gb|AC102155.10| Mus musculus chromosome 18, clone RP23-334J12, c... 40 5.2
17gb|BC070747.1| Xenopus laevis hypothetical protein MGC83751, mRN... 40 5.2
18emb|CT030278.1| Xenopus tropicalis finished cDNA, clone TEgg068n01 40 5.2
19gb|AC162866.5| Mus musculus chromosome 1, clone RP23-90B23, comp... 40 5.2
20emb|X77646.2|TMPLA2ANI Trimeresurus mucrosquamatus phospholipase... 40 5.2
21emb|AL353013.1|ATT24H18 Arabidopsis thaliana DNA chromosome 5, B... 40 5.2
22emb|CR925699.6| Zebrafish DNA sequence from clone RP71-18J1 in l... 40 5.2
23gb|AC012598.16| Homo sapiens 3 BAC RP11-237K10 (Roswell Park Can... 40 5.2
24gb|AC087465.5| Homo sapiens chromosome 15, clone RP11-94P14, com... 40 5.2
25ref|NM_207096.1| Danio rerio wingless-type MMTV integration site... 40 5.2
26emb|BX830559.1|CNS09YQ0 Arabidopsis thaliana Full-length cDNA Co... 40 5.2
27gb|BC066432.1| Danio rerio wingless-type MMTV integration site f... 40 5.2 
>gb|AY107337.1| Zea mays PCO064147 mRNA sequence
          Length = 1264

 Score =  129 bits (65), Expect = 7e-27
 Identities = 146/173 (84%)
 Strand = Plus / Minus

                                                                        
Query: 180  tctagggattacaacgataaggccaccagatagtagcatcttcacagcatactgtccgtc 239
            ||||||||||||||||||||| ||||||| |||| || | || | ||||||  ||| |||
Sbjct: 1078 tctagggattacaacgataagaccaccaggtagtggcttatttatagcatagagtcagtc 1019

                                                                        
Query: 240  ctcgctggcaaacgcctgaagaagtttaccggcgttgaaggcaacctgtgcctgaacctt 299
            || |||||||| || |||||||||||||| ||   ||| |||||||| || |||||||||
Sbjct: 1018 cttgctggcaaccgtctgaagaagtttactggtactgagggcaacctatgtctgaacctt 959

                                                                 
Query: 300  gggtgcctcatggcatagaaccctcctaatgctgcgagaacctggagcggtgt 352
            |||||||||||  ||||||||||||||||||| || | ||| || ||||||||
Sbjct: 958  gggtgcctcatcacatagaaccctcctaatgcagcaataacttgaagcggtgt 906
to top
>emb|AL732345.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0306F12, complete
             sequence
          Length = 84361

 Score =  119 bits (60), Expect = 7e-24
 Identities = 162/196 (82%)
 Strand = Plus / Minus

                                                                         
Query: 190   acaacgataaggccaccagatagtagcatcttcacagcatactgtccgtcctcgctggca 249
             |||| |||||||||||||||| | |||   || | ||||| ||||| ||||| |||||||
Sbjct: 60289 acaatgataaggccaccagatggcagctattttatagcatgctgtcggtccttgctggca 60230

                                                                         
Query: 250   aacgcctgaagaagtttaccggcgttgaaggcaacctgtgcctgaaccttgggtgcctca 309
               || |||||||| || || ||||||||||||||||| |  |||||||| ||||||||||
Sbjct: 60229 gtcgtctgaagaaattcactggcgttgaaggcaacctatatctgaacctcgggtgcctca 60170

                                                                         
Query: 310   tggcatagaaccctcctaatgctgcgagaacctggagcggtgtgacgtagagcactatcg 369
             || ||||||||||| | |||||||| ||||| ||||| ||||| || || || ||||| |
Sbjct: 60169 tgacatagaaccctgccaatgctgcaagaacttggagtggtgtaacatacaggactattg 60110

                             
Query: 370   cggctatgaaacagaa 385
             | ||||||| ||||||
Sbjct: 60109 ctgctatgagacagaa 60094
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  113 bits (57), Expect = 4e-22
 Identities = 156/189 (82%)
 Strand = Plus / Minus

                                                                            
Query: 190      acaacgataaggccaccagatagtagcatcttcacagcatactgtccgtcctcgctggca 249
                |||| |||||||||||||||| | |||   || | ||||| ||||| ||||| |||||||
Sbjct: 34954907 acaatgataaggccaccagatggcagctattttatagcatgctgtcggtccttgctggca 34954848

                                                                            
Query: 250      aacgcctgaagaagtttaccggcgttgaaggcaacctgtgcctgaaccttgggtgcctca 309
                  || |||||||| || || ||||||||||||||||| |  |||||||| ||||||||||
Sbjct: 34954847 gtcgtctgaagaaattcactggcgttgaaggcaacctatatctgaacctcgggtgcctca 34954788

                                                                            
Query: 310      tggcatagaaccctcctaatgctgcgagaacctggagcggtgtgacgtagagcactatcg 369
                || ||||||||||| | |||||||| ||||| ||||| ||||| || || || ||||| |
Sbjct: 34954787 tgacatagaaccctgccaatgctgcaagaacttggagtggtgtaacatacaggactattg 34954728

                         
Query: 370      cggctatga 378
                | |||||||
Sbjct: 34954727 ctgctatga 34954719
to top
>dbj|AK102910.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033113J04, full
            insert sequence
          Length = 3717

 Score =  113 bits (57), Expect = 4e-22
 Identities = 156/189 (82%)
 Strand = Plus / Minus

                                                                        
Query: 190  acaacgataaggccaccagatagtagcatcttcacagcatactgtccgtcctcgctggca 249
            |||| |||||||||||||||| | |||   || | ||||| ||||| ||||| |||||||
Sbjct: 3497 acaatgataaggccaccagatggcagctattttatagcatgctgtcggtccttgctggca 3438

                                                                        
Query: 250  aacgcctgaagaagtttaccggcgttgaaggcaacctgtgcctgaaccttgggtgcctca 309
              || |||||||| || || ||||||||||||||||| |  |||||||| ||||||||||
Sbjct: 3437 gtcgtctgaagaaattcactggcgttgaaggcaacctatatctgaacctcgggtgcctca 3378

                                                                        
Query: 310  tggcatagaaccctcctaatgctgcgagaacctggagcggtgtgacgtagagcactatcg 369
            || ||||||||||| | |||||||| ||||| ||||| ||||| || || || ||||| |
Sbjct: 3377 tgacatagaaccctgccaatgctgcaagaacttggagtggtgtaacatacaggactattg 3318

                     
Query: 370  cggctatga 378
            | |||||||
Sbjct: 3317 ctgctatga 3309
to top
>emb|AL606651.3|OSJN00092 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088H09,
             complete sequence
          Length = 145391

 Score =  113 bits (57), Expect = 4e-22
 Identities = 156/189 (82%)
 Strand = Plus / Minus

                                                                         
Query: 190   acaacgataaggccaccagatagtagcatcttcacagcatactgtccgtcctcgctggca 249
             |||| |||||||||||||||| | |||   || | ||||| ||||| ||||| |||||||
Sbjct: 13959 acaatgataaggccaccagatggcagctattttatagcatgctgtcggtccttgctggca 13900

                                                                         
Query: 250   aacgcctgaagaagtttaccggcgttgaaggcaacctgtgcctgaaccttgggtgcctca 309
               || |||||||| || || ||||||||||||||||| |  |||||||| ||||||||||
Sbjct: 13899 gtcgtctgaagaaattcactggcgttgaaggcaacctatatctgaacctcgggtgcctca 13840

                                                                         
Query: 310   tggcatagaaccctcctaatgctgcgagaacctggagcggtgtgacgtagagcactatcg 369
             || ||||||||||| | |||||||| ||||| ||||| ||||| || || || ||||| |
Sbjct: 13839 tgacatagaaccctgccaatgctgcaagaacttggagtggtgtaacatacaggactattg 13780

                      
Query: 370   cggctatga 378
             | |||||||
Sbjct: 13779 ctgctatga 13771
to top
>ref|XM_474407.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3036

 Score =  107 bits (54), Expect = 3e-20
 Identities = 129/154 (83%)
 Strand = Plus / Minus

                                                                        
Query: 225  agcatactgtccgtcctcgctggcaaacgcctgaagaagtttaccggcgttgaaggcaac 284
            ||||| ||||| ||||| |||||||  || |||||||| || || |||||||||||||||
Sbjct: 3032 agcatgctgtcggtccttgctggcagtcgtctgaagaaattcactggcgttgaaggcaac 2973

                                                                        
Query: 285  ctgtgcctgaaccttgggtgcctcatggcatagaaccctcctaatgctgcgagaacctgg 344
            || |  |||||||| |||||||||||| ||||||||||| | |||||||| ||||| |||
Sbjct: 2972 ctatatctgaacctcgggtgcctcatgacatagaaccctgccaatgctgcaagaacttgg 2913

                                              
Query: 345  agcggtgtgacgtagagcactatcgcggctatga 378
            || ||||| || || || ||||| || |||||||
Sbjct: 2912 agtggtgtaacatacaggactattgctgctatga 2879
to top
>dbj|AK073897.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033075A06, full
            insert sequence
          Length = 3730

 Score =  105 bits (53), Expect = 1e-19
 Identities = 155/189 (82%)
 Strand = Plus / Minus

                                                                        
Query: 190  acaacgataaggccaccagatagtagcatcttcacagcatactgtccgtcctcgctggca 249
            |||| |||||||||||||||| | |||   || | ||||| ||||| | ||| |||||||
Sbjct: 3519 acaatgataaggccaccagatggcagctattttatagcatgctgtcggcccttgctggca 3460

                                                                        
Query: 250  aacgcctgaagaagtttaccggcgttgaaggcaacctgtgcctgaaccttgggtgcctca 309
              || |||||||| || || ||||||||||||||||| |  |||||||| ||||||||||
Sbjct: 3459 gtcgtctgaagaaattcactggcgttgaaggcaacctatatctgaacctcgggtgcctca 3400

                                                                        
Query: 310  tggcatagaaccctcctaatgctgcgagaacctggagcggtgtgacgtagagcactatcg 369
            || ||||||||||| | |||||||| ||||| ||||| ||||| || || || ||||| |
Sbjct: 3399 tgacatagaaccctgccaatgctgcaagaacttggagtggtgtaacatacaggactattg 3340

                     
Query: 370  cggctatga 378
            | |||||||
Sbjct: 3339 ctgctatga 3331
to top
>gb|AY111562.1| Zea mays CL51463_1 mRNA sequence
          Length = 612

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                      
Query: 223 acagcatactgtccgtcctcgctggcaaacgcctgaagaagtt 265
           ||||||| ||||| |||||||| |||| |||||||||||||||
Sbjct: 353 acagcatgctgtcagtcctcgccggcagacgcctgaagaagtt 395
to top
>gb|AY104073.1| Zea mays PCO099302 mRNA sequence
          Length = 1254

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                      
Query: 223 acagcatactgtccgtcctcgctggcaaacgcctgaagaagtt 265
           ||||||| ||||| |||||||| |||| |||||||||||||||
Sbjct: 989 acagcatgctgtcggtcctcgccggcagacgcctgaagaagtt 947
to top
>gb|AC007277.2|AC007277 Homo sapiens BAC clone RP11-244E6 from 2, complete sequence
          Length = 180221

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 309   atggcatagaaccctcctaat 329
             |||||||||||||||||||||
Sbjct: 15003 atggcatagaaccctcctaat 14983
to top
>ref|NM_121300.2| Arabidopsis thaliana unknown protein AT5G12970 mRNA, complete cds
          Length = 2557

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 286  tgtgcctgaaccttgggtgcctca 309
            |||||||||||||||| |||||||
Sbjct: 2466 tgtgcctgaaccttggatgcctca 2443
to top
>gb|AY842481.1| Homo sapiens growth associated protein 43 (GAP43) gene, complete cds
          Length = 100848

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 371   ggctatgaaacagaatagca 390
             ||||||||||||||||||||
Sbjct: 85341 ggctatgaaacagaatagca 85360
to top
>gb|AC091455.12| Mus musculus chromosome 1, clone RP23-23O9, complete sequence
          Length = 257924

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 327   aatgctgcgagaacctggag 346
             ||||||||||||||||||||
Sbjct: 52476 aatgctgcgagaacctggag 52495
to top
>gb|AC157991.5| Mus musculus chromosome 18, clone RP23-335B10, complete sequence
          Length = 198636

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 164    acagacatggagtaattcta 183
              ||||||||||||||||||||
Sbjct: 133750 acagacatggagtaattcta 133769
to top
>gb|AC132914.7| Mus musculus chromosome 1, clone RP24-318M2, complete sequence
          Length = 157264

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 129    aacagtcacaaataataacacagc 152
              |||||||||||||||||| |||||
Sbjct: 129658 aacagtcacaaataataaaacagc 129635
to top
>gb|AC102155.10| Mus musculus chromosome 18, clone RP23-334J12, complete sequence
          Length = 189666

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 164    acagacatggagtaattcta 183
              ||||||||||||||||||||
Sbjct: 164883 acagacatggagtaattcta 164864
to top
>gb|BC070747.1| Xenopus laevis hypothetical protein MGC83751, mRNA (cDNA clone
           MGC:83751 IMAGE:6640465), complete cds
          Length = 2200

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 gacagacatggagtaattct 182
           ||||||||||||||||||||
Sbjct: 923 gacagacatggagtaattct 904
to top
>emb|CT030278.1| Xenopus tropicalis finished cDNA, clone TEgg068n01
          Length = 2184

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 gacagacatggagtaattct 182
           ||||||||||||||||||||
Sbjct: 896 gacagacatggagtaattct 877
to top
>gb|AC162866.5| Mus musculus chromosome 1, clone RP23-90B23, complete sequence
          Length = 230597

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 327   aatgctgcgagaacctggag 346
             ||||||||||||||||||||
Sbjct: 21289 aatgctgcgagaacctggag 21270
to top
>emb|X77646.2|TMPLA2ANI Trimeresurus mucrosquamatus phospholipase A2 antiplatelet protein
           mRNA
          Length = 445

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 270 ggcgttgaaggcaacctgtg 289
           ||||||||||||||||||||
Sbjct: 53  ggcgttgaaggcaacctgtg 72
to top
>emb|AL353013.1|ATT24H18 Arabidopsis thaliana DNA chromosome 5, BAC clone T24H18 (ESSA project)
          Length = 90020

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 286   tgtgcctgaaccttgggtgcctca 309
             |||||||||||||||| |||||||
Sbjct: 57053 tgtgcctgaaccttggatgcctca 57030
to top
>emb|CR925699.6| Zebrafish DNA sequence from clone RP71-18J1 in linkage group 4, complete
              sequence
          Length = 150030

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 16     gatatttcatcaacatgctt 35
              ||||||||||||||||||||
Sbjct: 139743 gatatttcatcaacatgctt 139762
to top
>gb|AC012598.16| Homo sapiens 3 BAC RP11-237K10 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 163538

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 371    ggctatgaaacagaatagca 390
              ||||||||||||||||||||
Sbjct: 140912 ggctatgaaacagaatagca 140893
to top
>gb|AC087465.5| Homo sapiens chromosome 15, clone RP11-94P14, complete sequence
          Length = 163320

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 34    ttccaaaacctggcaagtca 53
             ||||||||||||||||||||
Sbjct: 22717 ttccaaaacctggcaagtca 22698
to top
>ref|NM_207096.1| Danio rerio wingless-type MMTV integration site family, member 16
            (wnt16), mRNA
          Length = 2005

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 16   gatatttcatcaacatgctt 35
            ||||||||||||||||||||
Sbjct: 1314 gatatttcatcaacatgctt 1295
to top
>emb|BX830559.1|CNS09YQ0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB90ZB04 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 2560

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 286  tgtgcctgaaccttgggtgcctca 309
            |||||||||||||||| |||||||
Sbjct: 2470 tgtgcctgaaccttggatgcctca 2447
to top
>gb|BC066432.1| Danio rerio wingless-type MMTV integration site family, member 16,
            mRNA (cDNA clone MGC:77293 IMAGE:6965366), complete cds
          Length = 2005

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 16   gatatttcatcaacatgctt 35
            ||||||||||||||||||||
Sbjct: 1314 gatatttcatcaacatgctt 1295


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,883,089
Number of Sequences: 3902068
Number of extensions: 2883089
Number of successful extensions: 80210
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80144
Number of HSP's gapped (non-prelim): 61
length of query: 392
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 370
effective length of database: 17,147,199,772
effective search space: 6344463915640
effective search space used: 6344463915640
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top