Clone Name | rbastl32e10 |
---|---|
Clone Library Name | barley_pub |
>MSH2_MAIZE (Q9XGC9) DNA mismatch repair protein MSH2 (MUS1)| Length = 942 Score = 97.8 bits (242), Expect = 6e-21 Identities = 44/60 (73%), Positives = 51/60 (85%) Frame = -3 Query: 320 KRVFSPDDVTRGTARARLLLEDFAALPLDEVDGSKATEMVAKLKSDFEKDAASNPWLHQF 141 KRVFSPDD+TRG ARARL LE+FAALP+DE+DGSK EM K+K+D +KDAA NPWL QF Sbjct: 882 KRVFSPDDITRGAARARLFLEEFAALPMDEMDGSKILEMATKMKADLQKDAADNPWLQQF 941
>MSH2_ARATH (O24617) DNA mismatch repair protein MSH2 (AtMsh2)| Length = 937 Score = 58.2 bits (139), Expect = 5e-09 Identities = 26/56 (46%), Positives = 39/56 (69%) Frame = -3 Query: 305 PDDVTRGTARARLLLEDFAALPLDEVDGSKATEMVAKLKSDFEKDAASNPWLHQFL 138 PD+V+RG RA L++FAA+PLD+++ + + V ++K + EKDAA WL QFL Sbjct: 882 PDEVSRGAERAHKFLKEFAAIPLDKMELKDSLQRVREMKDELEKDAADCHWLRQFL 937
>YS97_CAEEL (Q09966) Putative G-protein coupled receptor B0244.7| Length = 319 Score = 28.1 bits (61), Expect = 5.8 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = -2 Query: 297 CDEGNCSGSPFVRGFCCIAS 238 CD GNC+G + G CIA+ Sbjct: 199 CDYGNCAGPVLIFGIVCIAT 218
>PNCB_METAC (Q8TMW6) Nicotinate phosphoribosyltransferase (EC 2.4.2.11)| (NAPRTase) Length = 404 Score = 27.7 bits (60), Expect = 7.5 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = -1 Query: 148 TSSSEWNGKEWIADPSVTARQLGT 77 T EWNGKEW + S T+ + T Sbjct: 133 TIEKEWNGKEWDGNISATSESILT 156
>MLP28_ARATH (Q9SSK9) MLP-like protein 28| Length = 335 Score = 27.7 bits (60), Expect = 7.5 Identities = 12/32 (37%), Positives = 22/32 (68%) Frame = -3 Query: 236 DEVDGSKATEMVAKLKSDFEKDAASNPWLHQF 141 DEV ++A+ +V KL++D E A+++ + H F Sbjct: 12 DEVKKTEASSLVGKLETDVEIKASADKFHHMF 43
>RFCL_METTH (O26342) Replication factor C large subunit (RFC large subunit)| (Clamp loader large subunit) (mthRFC large subunit) Length = 479 Score = 27.7 bits (60), Expect = 7.5 Identities = 17/52 (32%), Positives = 25/52 (48%) Frame = +2 Query: 8 QKDLVENLVDNRFCLLALRKGKDRPKLTRSNRRISDPFLSIPFRGTGVARDY 163 +KD NL D + A+ K +D K+ + R DP L + F V R+Y Sbjct: 220 EKDATSNLFD---AVRAVLKSRDVSKVREAMRVDDDPTLVLEFIAENVPREY 268
>ZBTB3_HUMAN (Q9H5J0) Zinc finger and BTB domain-containing protein 3| Length = 574 Score = 27.7 bits (60), Expect = 7.5 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%) Frame = -1 Query: 190 NQTSRKTQPVIPGYTSSSEWNGKEW--IADPSVTAR 89 + TSR TQP + +S W EW A PS T R Sbjct: 197 SSTSRGTQPSLASAETSGHWGKGEWKGSAAPSPTVR 232
>YHDT_BACSU (O07589) Hypothetical UPF0053 protein yhdT| Length = 461 Score = 27.3 bits (59), Expect = 9.9 Identities = 16/46 (34%), Positives = 24/46 (52%) Frame = -3 Query: 275 ARLLLEDFAALPLDEVDGSKATEMVAKLKSDFEKDAASNPWLHQFL 138 ARLL F P E DGS + E + L S+ K+ NP ++++ Sbjct: 161 ARLLCGMFGLKPASEHDGSHSEEELRMLLSESLKNGEINPSEYKYV 206 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,321,473 Number of Sequences: 219361 Number of extensions: 684049 Number of successful extensions: 1634 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 1618 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1633 length of database: 80,573,946 effective HSP length: 82 effective length of database: 62,586,344 effective search space used: 1502072256 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)