>ZC3H6_HUMAN (P61129) Zinc finger CCCH-type domain-containing protein 6|
          Length = 1189

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
 Frame = +2

Query: 26  PGEIYLPCHINRLQNPTYFYILGH-HHNTDNTSLPN------YVGSYCSYQTTKYYNTPQ 184
           PGE+ L  +   LQNP  FY   +  H+  N   PN      + G +   Q     ++P 
Sbjct: 579 PGEMQLNTNYESLQNPAEFYDNYYAQHSIHNFQPPNNSGDGMWHGEFAQQQPPVVQDSPN 638

Query: 185 L-RAS*ENNTRPYLNPMATTGILTRWRRSPFIVISPK 292
               S  ++TR    P+   G+L   +R+ F+ ++ +
Sbjct: 639 HGSGSDGSSTRTGHGPLPVPGLLPAVQRALFVRLTQR 675

>CUS1_YEAST (Q02554) Protein CUS1|
          Length = 436

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +2

Query: 53  INRLQNPTYFYILGHHHNTDNTSLPNYVGSYCSYQTTKYYNTPQ 184
           I  L+   Y  I+ +HH+       NY G+  S++T ++ N+ +
Sbjct: 337 ITNLKGDVYGKIIPNHHSRSKKQGRNYFGALISFETPEFENSKE 380

>RRPL_BUNYW (P20470) RNA-directed RNA polymerase (EC 2.7.7.48) (L protein)|
          Length = 2238

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 17  VWIPGEIYLPCHINRLQNPTYFYILGHH 100
           +W PG++ L  +IN++  P YF   G H
Sbjct: 731 IWFPGKVNLKEYINQIYLPFYFNAKGLH 758

>YN53_CAEEL (P34587) Hypothetical protein ZC21.3|
          Length = 321

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 101 HNTDNTSLPNYVGSYCSYQTTKYYNTP 181
           ++ D+ S  + V S C YQT + YNTP
Sbjct: 279 YSADSISCCSQVSSTCCYQTQQGYNTP 305

>HHAT_MOUSE (Q8BMT9) Protein-cysteine N-palmitoyltransferase HHAT (EC 2.3.1.-)|
           (Hedgehog acyltransferase) (Skinny hedgehog protein)
          Length = 499

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
 Frame = -2

Query: 239 WLPWGSNRVVYCSLMML*AEECCNIL*FGRNNKSRRNSVMMY----CLCYDGAPG 87
           W+ WG  R+V+  +  +   +   +L      K R   VM+Y    C C  GAPG
Sbjct: 63  WMEWGKRRLVWLFIGHMAVSQLATLL----TKKHRPWIVMVYGMWACWCVLGAPG 113

>MC6ZB_XENLA (Q7ZY18) Zygotic DNA replication licensing factor mcm6-B (Zygotic|
           minichromosome maintenance protein 6-B) (zMCM6-B)
           (zMCM6b)
          Length = 825

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 109 RQYIITELRRLLLFLPNYKILQHSSAQSIIREQYTTLFEPHGN 237
           R Y + E+RR LLF   +K      ++  I EQY  L +  G+
Sbjct: 566 RVYTLDEVRRYLLFARQFKPKISKESEDFIVEQYKRLRQRDGS 608

>TGB2_SHVX (Q04582) TGB2 protein (Triple gene block 2 protein) (TGBp2) (12 kDa|
           protein) (ORF 3 protein)
          Length = 103

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +2

Query: 101 HNTDNTSLPNYVGSYCSYQTTKYYNTPQLRAS*ENNTRPYLNPMATT 241
           H  DNT    + G YC       Y+ P+  +S  NN  P++  +A T
Sbjct: 36  HVGDNTHNLPHGGQYCDGNKRVLYSGPKSGSSPTNNLWPFITVIALT 82

>YPC2_CAEEL (Q11179) Putative serine/threonine-protein kinase C05D10.2 in|
           chromosome III (EC 2.7.11.24)
          Length = 470

 Score = 23.9 bits (50), Expect(2) = 6.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 227 PMATTGILTRWRRSPFIVISPK 292
           P  T  + TRW RSP I+++ K
Sbjct: 175 PDLTEYVATRWYRSPEILLAAK 196



 Score = 22.3 bits (46), Expect(2) = 6.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 106 HRQYIITELRRLLLFLPNYKIL 171
           H+QYI+ +L R + FL +  +L
Sbjct: 113 HKQYIMCQLFRAIRFLHSGNVL 134

>VGL2_EBV (P03218) Probable membrane glycoprotein|
          Length = 248

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 11/57 (19%)
 Frame = +3

Query: 102 ITQTIHHYRITSALIVPTKLQNITTLLSSEHHKRTI-----HDPI------*TPWQP 239
           +TQ +H   I +  I PT L + TT  S   H+R +     H P+        PW+P
Sbjct: 147 LTQRMHLTVIPATTIAPTTLVSHTTSTSHRPHRRPVSKRPTHKPVTLGPFPIDPWRP 203

>MCM6Z_XENTR (Q6P1V8) Zygotic DNA replication licensing factor mcm6 (Zygotic|
           minichromosome maintenance protein 6) (zMCM6)
          Length = 823

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +1

Query: 109 RQYIITELRRLLLFLPNYKILQHSSAQSIIREQYTTLFEPHG 234
           R Y + E+RR LLF   +K      ++  I EQY  L +  G
Sbjct: 566 RVYTLDEVRRYLLFARQFKPKISKESEDFIVEQYKRLRQRDG 607

>Y072_NPVOP (O10325) Hypothetical 6.3 kDa protein (ORF75)|
          Length = 55

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -3

Query: 325 PHDEDGDRYLQFRRD 281
           P D DGDRYLQF  +
Sbjct: 31  PEDNDGDRYLQFNNN 45

>SYI_FRATT (Q5NGD0) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 935

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 99  IITQTIHHYRITSALIVPTKLQNITTLLSSEHHKRTIHDPI 221
           ++ QT+  Y I +A I+ T   N  T + +EH   + H PI
Sbjct: 277 LVEQTLKRYAIENAQIIATTTGNKLTGIMAEHPFYSRHVPI 317

>MC6ZA_XENLA (Q498J7) Zygotic DNA replication licensing factor mcm6-A (Zygotic|
           minichromosome maintenance protein 6-A) (zMCM6-A)
           (zMCM6a)
          Length = 823

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +1

Query: 109 RQYIITELRRLLLFLPNYKILQHSSAQSIIREQYTTLFEPHGN 237
           R Y + E+RR LLF   +K      +   I EQY  L +  G+
Sbjct: 566 RVYTVDEVRRYLLFARQFKPKISKESADFIVEQYKRLRQRDGS 608

>DBPA_ECOLI (P21693) ATP-independent RNA helicase dbpA (EC 3.6.1.-)|
          Length = 457

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +1

Query: 127 ELRRLLLFLPNYKILQHSSAQSIIREQYTTLFEPH 231
           ELRRL  FLPN KIL     Q    ++ +    PH
Sbjct: 90  ELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPH 124

>STNB_DROME (Q24212) Protein stoned-B (StonedB) (Stn-B)|
          Length = 1262

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 199 REQYTTLFE-PHGNHWDPD*VAPVTLHRDLAETVGTGHRPRRE 324
           +E   +LFE PH     P    P  LH DL ET+G G  P +E
Sbjct: 298 KEDILSLFEQPHVPLSQPA-SKPDLLHDDLDETIGEGEPPEQE 339


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,597,761
Number of Sequences: 219361
Number of extensions: 1186674
Number of successful extensions: 2741
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2741
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 1391514312
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)