ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl32e08 |
|---|---|
| Clone Library Name | barley_pub |
>LEUD2_THEMA (Q9WZ25) 3-isopropylmalate dehydratase small subunit 2 (EC| 4.2.1.33) (Isopropylmalate isomerase 2) (Alpha-IPM isomerase 2) (IPMI 2) Length = 166 Score = 41.2 bits (95), Expect = 0.001 Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%) Frame = -1 Query: 433 ECKTGDVVTVDLDNSVLINHTSGKQYKLKPIGD-AGPVIEAGGIFAYARK 287 E + GD+ VDL+N V+ N T GK+Y+++P + ++EAGG Y K Sbjct: 113 EFEEGDIAEVDLENGVVRNLTKGKEYRIRPYPEFLMKIMEAGGWLEYCLK 162
>LEUD_THETN (Q8RDK1) 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 161 Score = 39.3 bits (90), Expect = 0.004 Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 1/46 (2%) Frame = -1 Query: 421 GDVVTVDLDNSVLINHTSGKQYKLKPIGD-AGPVIEAGGIFAYARK 287 GD+V+VD+DN ++ N T G ++K +P + +I+ GG+ Y R+ Sbjct: 113 GDIVSVDVDNGIIRNVTKGTEFKAQPFPEFIKEIIKYGGLINYVRE 158
>LEUD1_THEMA (Q9WYC8) 3-isopropylmalate dehydratase small subunit 1 (EC| 4.2.1.33) (Isopropylmalate isomerase 1) (Alpha-IPM isomerase 1) (IPMI 1) Length = 166 Score = 38.1 bits (87), Expect = 0.010 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Frame = -1 Query: 433 ECKTGDVVTVDLDNSVLINHTSGKQYKLKPIGD-AGPVIEAGGIFAYARKTG 281 E GD + +DL+N VL N T+GK+Y+ PI +++ GI Y +K G Sbjct: 110 EINQGDELEIDLENGVLKNLTTGKEYRFTPIPKFLLEILKEDGIVNYLKKHG 161
>LEUD2_METMA (Q8PWT6) 3-isopropylmalate dehydratase small subunit 2 (EC| 4.2.1.33) (Isopropylmalate isomerase 2) (Alpha-IPM isomerase 2) (IPMI 2) Length = 162 Score = 38.1 bits (87), Expect = 0.010 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Frame = -1 Query: 421 GDVVTVDLDNSVLINHTSGKQYKLKPIGD-AGPVIEAGGIFAYARK 287 GD + VD+ V+ N T G+ Y+ P+ D +++ GG+ YARK Sbjct: 112 GDELEVDISTGVIQNRTKGETYQATPLPDFVREIVDEGGLIEYARK 157
>LEUD2_ARCFU (O28513) 3-isopropylmalate dehydratase small subunit 2 (EC| 4.2.1.33) (Isopropylmalate isomerase 2) (Alpha-IPM isomerase 2) (IPMI 2) Length = 165 Score = 37.0 bits (84), Expect = 0.022 Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Frame = -1 Query: 424 TGDVVTVDLDNSVLINHTSGKQYKLKPIGDAG-PVIEAGGIFAYARKTGMI 275 +GD + VDL +++N T G + ++KPI + ++ GG+ +Y +K G I Sbjct: 113 SGDELEVDLGKGLVVNRTKGIEIRVKPIPEVMLKILHEGGLVSYVKKHGDI 163
>LEUD_AQUAE (O67399) 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 168 Score = 36.2 bits (82), Expect = 0.037 Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 1/53 (1%) Frame = -1 Query: 442 ASKECKTGDVVTVDLDNSVLINHTSGKQYK-LKPIGDAGPVIEAGGIFAYARK 287 A E + GD + VDL+ V+ N +GK+Y+ K + +++AGG+ AYA++ Sbjct: 111 AVDEIEHGDEIEVDLEKGVIKNLRTGKEYQATKFPKELQDILKAGGLMAYAKE 163
>LEUD1_METTH (O26917) 3-isopropylmalate dehydratase small subunit 1 (EC| 4.2.1.33) (Isopropylmalate isomerase 1) (Alpha-IPM isomerase 1) (IPMI 1) Length = 170 Score = 35.8 bits (81), Expect = 0.049 Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Frame = -1 Query: 442 ASKECKTGDVVTVDLDNSVLINHTSGKQYKLKPIGD-AGPVIEAGGIFAYARKT 284 A + GD V++DL + + N T+G +Y++KP D ++E GG+ + KT Sbjct: 107 AKVDADDGDEVSIDLRSGQIRNLTAGSEYRMKPFNDYMLSILEDGGLVNHYLKT 160
>LEUD2_METAC (Q8TU71) 3-isopropylmalate dehydratase small subunit 2 (EC| 4.2.1.33) (Isopropylmalate isomerase 2) (Alpha-IPM isomerase 2) (IPMI 2) Length = 162 Score = 35.0 bits (79), Expect = 0.083 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Frame = -1 Query: 421 GDVVTVDLDNSVLINHTSGKQYKLKPIGD-AGPVIEAGGIFAYARK 287 GD + VDL + N T G+ Y+ P+ D +++ GG+ YARK Sbjct: 112 GDELEVDLSTGDIQNITKGETYQATPLPDFVREIVDEGGLIEYARK 157
>LEUD1_METJA (Q58667) 3-isopropylmalate dehydratase small subunit 1 (EC| 4.2.1.33) (Isopropylmalate isomerase 1) (Alpha-IPM isomerase 1) (IPMI 1) Length = 170 Score = 33.9 bits (76), Expect = 0.18 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Frame = -1 Query: 433 ECKTGDVVTVDLDNSVLINHTSGKQYKLK-PIGDAGPVIEAGGIFAYARKTGMI 275 E K GD+V +DLD ++ K K + P G ++ AGG+ Y +K +I Sbjct: 109 EIKDGDIVEIDLDKEEIVITNKNKTIKCETPKGLEREILAAGGLVNYLKKRKLI 162
>BPA1_STRAU (P33912) Non-haem bromoperoxidase BPO-A1 (EC 1.11.1.-) (Bromide| peroxidase) (BPO1) Length = 274 Score = 30.0 bits (66), Expect = 2.7 Identities = 23/78 (29%), Positives = 34/78 (43%) Frame = +3 Query: 54 FHGCNTQYNKVQHSRA*YYWYKAMSK**QNCWTITPPEKCKDSYS*TSLTCHPQALN*SD 233 F N NKV +WY AM++ TI +C D++ T T + L D Sbjct: 162 FFSANRPGNKVTQGNKDAFWYMAMAQ------TIEGGVRCVDAFGYTDFT---EDLKKFD 212 Query: 234 SRSSLLFVHADLDAIIPV 287 + L VH D D ++P+ Sbjct: 213 IPT--LVVHGDDDQVVPI 228
>LEUD_PYRAE (Q8ZW36) 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 161 Score = 29.6 bits (65), Expect = 3.5 Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Frame = -1 Query: 436 KECKTGDVVTVDLDNSVLINHTSGKQYKLKPI-GDAGPVIEAGGIFAYARKT 284 ++ K GD V +D++ ++ N T+G+ KP+ G +++AGG+ Y + + Sbjct: 109 EKVKDGDEVELDVEGGIVRNITTGEVIVGKPLRGLPLEILKAGGLLNYLKNS 160
>LEUD_WOLSU (Q7M887) 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 167 Score = 29.6 bits (65), Expect = 3.5 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Frame = -1 Query: 433 ECKTGDVVTVDLDNSVLINHTSGKQYKLKPIGD-AGPVIEAGGIFAYAR 290 E + GD + VD+ + N T + Y KPI ++E+GG+ +A+ Sbjct: 111 EIREGDTLEVDMAQGTIKNLTRNQTYAFKPIPPFMMELLESGGLIEHAK 159
>SYFB_DEHSC (Q3ZZD2) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 809 Score = 29.6 bits (65), Expect = 3.5 Identities = 18/51 (35%), Positives = 27/51 (52%) Frame = -1 Query: 430 CKTGDVVTVDLDNSVLINHTSGKQYKLKPIGDAGPVIEAGGIFAYARKTGM 278 CK GD V +VLI+ +GK+ LKP G +E+ G+ R+ G+ Sbjct: 83 CKVGDKVVFARTGAVLIDGHNGKEIVLKPAVLRG--VESCGMVCSERELGL 131
>SYFB_DEHE1 (Q3Z9I7) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 809 Score = 29.6 bits (65), Expect = 3.5 Identities = 18/51 (35%), Positives = 27/51 (52%) Frame = -1 Query: 430 CKTGDVVTVDLDNSVLINHTSGKQYKLKPIGDAGPVIEAGGIFAYARKTGM 278 CK GD V +VLI+ +GK+ LKP G +E+ G+ R+ G+ Sbjct: 83 CKAGDKVVFARTGAVLIDGHNGKEMVLKPAVLRG--VESCGMVCSERELGL 131
>LEUD_CLOAB (Q97EE1) 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 163 Score = 29.3 bits (64), Expect = 4.5 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = -1 Query: 442 ASKECKTGDVVTVDLDNSVLINHTSGKQYKLKPIGD 335 A + TGD + VD ++ N T K+YK +P D Sbjct: 108 AVNDASTGDKLEVDFIEGIIKNVTLNKEYKAQPFPD 143
>FLGM_SHIFL (P0AEM5) Negative regulator of flagellin synthesis (Anti-sigma-28| factor) Length = 97 Score = 28.9 bits (63), Expect = 5.9 Identities = 18/54 (33%), Positives = 33/54 (61%) Frame = -2 Query: 375 THPASSTS*SLLVMQARLLRPGGSSLMLGRLE*SRPNLREQKVSLICCQIS*AL 214 T ++STS +L QA+L++PG S + L R+E + +R ++ + +I+ AL Sbjct: 33 TTASTSTSVTLSDAQAKLMQPGSSDINLERVEALKLAIRNGELKMDTGKIADAL 86
>FLGM_ECOLI (P0AEM4) Negative regulator of flagellin synthesis (Anti-sigma-28| factor) Length = 97 Score = 28.9 bits (63), Expect = 5.9 Identities = 18/54 (33%), Positives = 33/54 (61%) Frame = -2 Query: 375 THPASSTS*SLLVMQARLLRPGGSSLMLGRLE*SRPNLREQKVSLICCQIS*AL 214 T ++STS +L QA+L++PG S + L R+E + +R ++ + +I+ AL Sbjct: 33 TTASTSTSVTLSDAQAKLMQPGSSDINLERVEALKLAIRNGELKMDTGKIADAL 86
>NPY5R_RAT (Q63634) Neuropeptide Y receptor type 5 (NPY5-R) (NPY-Y5 receptor)| (Y5 receptor) Length = 456 Score = 28.9 bits (63), Expect = 5.9 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = +1 Query: 220 STNLTADQAYFLFTQIWTRSF 282 S NLTA+ YFL +WT F Sbjct: 159 SNNLTANHGYFLIATVWTLGF 179
>NPY5R_CANFA (O62729) Neuropeptide Y receptor type 5 (NPY5-R) (NPY-Y5 receptor)| (Y5 receptor) (NPYY5) Length = 446 Score = 28.9 bits (63), Expect = 5.9 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = +1 Query: 220 STNLTADQAYFLFTQIWTRSF 282 S NLTA+ YFL +WT F Sbjct: 148 SNNLTANHGYFLIATVWTLGF 168
>NPY5R_HUMAN (Q15761) Neuropeptide Y receptor type 5 (NPY5-R) (NPY-Y5 receptor)| (Y5 receptor) (NPYY5) Length = 455 Score = 28.9 bits (63), Expect = 5.9 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = +1 Query: 220 STNLTADQAYFLFTQIWTRSF 282 S NLTA+ YFL +WT F Sbjct: 158 SNNLTANHGYFLIATVWTLGF 178
>NPY5R_MOUSE (O70342) Neuropeptide Y receptor type 5 (NPY5-R) (NPY-Y5 receptor)| (Y5 receptor) Length = 466 Score = 28.9 bits (63), Expect = 5.9 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = +1 Query: 220 STNLTADQAYFLFTQIWTRSF 282 S NLTA+ YFL +WT F Sbjct: 169 SNNLTANHGYFLIATVWTLGF 189
>SNAA2_ARATH (Q9SPE6) Alpha-soluble NSF attachment protein 2 (Alpha-SNAP2)| (N-ethylmaleimide-sensitive factor attachment protein, alpha 2) Length = 289 Score = 28.5 bits (62), Expect = 7.7 Identities = 12/30 (40%), Positives = 19/30 (63%) Frame = +1 Query: 40 CKQDYSMGVTLNTTKFSTLEPSITGTRQCQ 129 CK D + +T K+ L+P+ TGTR+C+ Sbjct: 205 CKADV-VSITNALEKYQDLDPTFTGTRECK 233 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,499,402 Number of Sequences: 219361 Number of extensions: 1120665 Number of successful extensions: 2726 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 2662 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2723 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
