ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl32e08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_507518.1| PREDICTED Oryza sativa (japonica cultivar-group... 190 3e-45
2ref|XM_467111.1| Oryza sativa (japonica cultivar-group), mRNA 190 3e-45
3ref|XM_507517.1| PREDICTED Oryza sativa (japonica cultivar-group... 190 3e-45
4ref|XM_506891.2| PREDICTED Oryza sativa (japonica cultivar-group... 190 3e-45
5gb|AY363174.1| Oryza sativa (japonica cultivar-group) 3-isopropy... 190 3e-45
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 190 3e-45
7dbj|AP004676.3| Oryza sativa (japonica cultivar-group) genomic D... 190 3e-45
8dbj|AP005006.3| Oryza sativa (japonica cultivar-group) genomic D... 190 3e-45
9dbj|AK120006.1| Oryza sativa (japonica cultivar-group) cDNA clon... 190 3e-45
10dbj|AK106107.1| Oryza sativa (japonica cultivar-group) cDNA clon... 190 3e-45
11dbj|AK103778.1| Oryza sativa (japonica cultivar-group) cDNA clon... 190 3e-45
12dbj|AK061544.1| Oryza sativa (japonica cultivar-group) cDNA clon... 190 3e-45
13emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chro... 190 3e-45
14gb|BT016386.1| Zea mays clone Contig219 mRNA sequence 143 6e-31
15gb|BT009140.1| Triticum aestivum clone wl1n.pk0048.a6:fis, full ... 143 6e-31
16gb|AY109732.1| Zea mays CL1042_1 mRNA sequence 143 6e-31
17gb|DQ002408.1| Zea mays gypsy retrotransposon huck, and copia re... 56 1e-04
18gb|DQ002407.1| Zea mays copia retrotransposon opie1, gypsy retro... 56 1e-04
19ref|NM_129870.2| Arabidopsis thaliana hydro-lyase AT2G43090 mRNA... 50 0.006
20gb|AY063029.1| Arabidopsis thaliana putative 3-isopropylmalate d... 50 0.006
21gb|AY035158.1| Arabidopsis thaliana putative 3-isopropylmalate d... 50 0.006
22gb|AC006224.4| Arabidopsis thaliana chromosome 2 clone MFL8 map ... 50 0.006
23gb|AC004450.3| Arabidopsis thaliana chromosome 2 clone F14B2 map... 50 0.006
24emb|BX822010.1|CNS0A8AQ Arabidopsis thaliana Full-length cDNA Co... 50 0.006
25emb|BX821264.1|CNS0A860 Arabidopsis thaliana Full-length cDNA Co... 50 0.006
26gb|BT014469.1| Lycopersicon esculentum clone 133817F, mRNA sequence 48 0.024
27gb|AY087084.1| Arabidopsis thaliana clone 31507 mRNA, complete s... 42 1.5
28emb|BX324157.4| Zebrafish DNA sequence from clone DKEY-15N1 in l... 40 5.9
29dbj|AP003035.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 5.9
30gb|AC109606.11| Mus musculus strain C57BL/6J chromosome 5 clone ... 40 5.9

>ref|XM_507518.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1003_B06.26
           mRNA
          Length = 1311

 Score =  190 bits (96), Expect = 3e-45
 Identities = 159/180 (88%)
 Strand = Plus / Minus

                                                                       
Query: 257 tcacgcagatttggacgcgatcattccagtcttccgagcataagcgaagatccccccggc 316
           ||||||||| ||||| ||||||||||| |||||||| ||||| || |||||||| || ||
Sbjct: 816 tcacgcagacttggatgcgatcattccggtcttccgggcataggcaaagatcccgcctgc 757

                                                                       
Query: 317 ctcaataaccgggcctgcatcaccaataggcttcagcttgtactgcttgccggatgtgtg 376
           |||||||||||| || ||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 756 ctcaataaccggcccggcatcgccgataggcttcagcttgtactgcttgccggatgtgtg 697

                                                                       
Query: 377 gttaatcaagaccgagttatcgaggtcgactgtgaccacatccccggtcttgcactcctt 436
           ||| |||| |||  | ||||| || || || |||||||||||||||||||||||||||||
Sbjct: 696 gttgatcatgacgcaattatcaagttccaccgtgaccacatccccggtcttgcactcctt 637



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>ref|XM_467111.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1081

 Score =  190 bits (96), Expect = 3e-45
 Identities = 159/180 (88%)
 Strand = Plus / Minus

                                                                       
Query: 257 tcacgcagatttggacgcgatcattccagtcttccgagcataagcgaagatccccccggc 316
           ||||||||| ||||| ||||||||||| |||||||| ||||| || |||||||| || ||
Sbjct: 807 tcacgcagacttggatgcgatcattccggtcttccgggcataggcaaagatcccgcctgc 748

                                                                       
Query: 317 ctcaataaccgggcctgcatcaccaataggcttcagcttgtactgcttgccggatgtgtg 376
           |||||||||||| || ||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 747 ctcaataaccggcccggcatcgccgataggcttcagcttgtactgcttgccggatgtgtg 688

                                                                       
Query: 377 gttaatcaagaccgagttatcgaggtcgactgtgaccacatccccggtcttgcactcctt 436
           ||| |||| |||  | ||||| || || || |||||||||||||||||||||||||||||
Sbjct: 687 gttgatcatgacgcaattatcaagttccaccgtgaccacatccccggtcttgcactcctt 628



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>ref|XM_507517.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1003_B06.26
           mRNA
          Length = 1092

 Score =  190 bits (96), Expect = 3e-45
 Identities = 159/180 (88%)
 Strand = Plus / Minus

                                                                       
Query: 257 tcacgcagatttggacgcgatcattccagtcttccgagcataagcgaagatccccccggc 316
           ||||||||| ||||| ||||||||||| |||||||| ||||| || |||||||| || ||
Sbjct: 785 tcacgcagacttggatgcgatcattccggtcttccgggcataggcaaagatcccgcctgc 726

                                                                       
Query: 317 ctcaataaccgggcctgcatcaccaataggcttcagcttgtactgcttgccggatgtgtg 376
           |||||||||||| || ||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 725 ctcaataaccggcccggcatcgccgataggcttcagcttgtactgcttgccggatgtgtg 666

                                                                       
Query: 377 gttaatcaagaccgagttatcgaggtcgactgtgaccacatccccggtcttgcactcctt 436
           ||| |||| |||  | ||||| || || || |||||||||||||||||||||||||||||
Sbjct: 665 gttgatcatgacgcaattatcaagttccaccgtgaccacatccccggtcttgcactcctt 606



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>ref|XM_506891.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1003_B06.26
           mRNA
          Length = 1141

 Score =  190 bits (96), Expect = 3e-45
 Identities = 159/180 (88%)
 Strand = Plus / Minus

                                                                       
Query: 257 tcacgcagatttggacgcgatcattccagtcttccgagcataagcgaagatccccccggc 316
           ||||||||| ||||| ||||||||||| |||||||| ||||| || |||||||| || ||
Sbjct: 819 tcacgcagacttggatgcgatcattccggtcttccgggcataggcaaagatcccgcctgc 760

                                                                       
Query: 317 ctcaataaccgggcctgcatcaccaataggcttcagcttgtactgcttgccggatgtgtg 376
           |||||||||||| || ||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 759 ctcaataaccggcccggcatcgccgataggcttcagcttgtactgcttgccggatgtgtg 700

                                                                       
Query: 377 gttaatcaagaccgagttatcgaggtcgactgtgaccacatccccggtcttgcactcctt 436
           ||| |||| |||  | ||||| || || || |||||||||||||||||||||||||||||
Sbjct: 699 gttgatcatgacgcaattatcaagttccaccgtgaccacatccccggtcttgcactcctt 640



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>gb|AY363174.1| Oryza sativa (japonica cultivar-group) 3-isopropylmalate
           dehydratase small subunit (IPMDHSU) mRNA, complete cds
          Length = 1063

 Score =  190 bits (96), Expect = 3e-45
 Identities = 159/180 (88%)
 Strand = Plus / Minus

                                                                       
Query: 257 tcacgcagatttggacgcgatcattccagtcttccgagcataagcgaagatccccccggc 316
           ||||||||| ||||| ||||||||||| |||||||| ||||| || |||||||| || ||
Sbjct: 792 tcacgcagacttggatgcgatcattccggtcttccgggcataggcaaagatcccgcctgc 733

                                                                       
Query: 317 ctcaataaccgggcctgcatcaccaataggcttcagcttgtactgcttgccggatgtgtg 376
           |||||||||||| || ||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 732 ctcaataaccggcccggcatcgccgataggcttcagcttgtactgcttgccggatgtgtg 673

                                                                       
Query: 377 gttaatcaagaccgagttatcgaggtcgactgtgaccacatccccggtcttgcactcctt 436
           ||| |||| |||  | ||||| || || || |||||||||||||||||||||||||||||
Sbjct: 672 gttgatcatgacgcaattatcaagttccaccgtgaccacatccccggtcttgcactcctt 613



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  190 bits (96), Expect = 3e-45
 Identities = 159/180 (88%)
 Strand = Plus / Plus

                                                                            
Query: 257      tcacgcagatttggacgcgatcattccagtcttccgagcataagcgaagatccccccggc 316
                ||||||||| ||||| ||||||||||| |||||||| ||||| || |||||||| || ||
Sbjct: 26486955 tcacgcagacttggatgcgatcattccggtcttccgggcataggcaaagatcccgcctgc 26487014

                                                                            
Query: 317      ctcaataaccgggcctgcatcaccaataggcttcagcttgtactgcttgccggatgtgtg 376
                |||||||||||| || ||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 26487015 ctcaataaccggcccggcatcgccgataggcttcagcttgtactgcttgccggatgtgtg 26487074

                                                                            
Query: 377      gttaatcaagaccgagttatcgaggtcgactgtgaccacatccccggtcttgcactcctt 436
                ||| |||| |||  | ||||| || || || |||||||||||||||||||||||||||||
Sbjct: 26487075 gttgatcatgacgcaattatcaagttccaccgtgaccacatccccggtcttgcactcctt 26487134



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>dbj|AP004676.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1003_B06
          Length = 131956

 Score =  190 bits (96), Expect = 3e-45
 Identities = 159/180 (88%)
 Strand = Plus / Plus

                                                                         
Query: 257   tcacgcagatttggacgcgatcattccagtcttccgagcataagcgaagatccccccggc 316
             ||||||||| ||||| ||||||||||| |||||||| ||||| || |||||||| || ||
Sbjct: 86871 tcacgcagacttggatgcgatcattccggtcttccgggcataggcaaagatcccgcctgc 86930

                                                                         
Query: 317   ctcaataaccgggcctgcatcaccaataggcttcagcttgtactgcttgccggatgtgtg 376
             |||||||||||| || ||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 86931 ctcaataaccggcccggcatcgccgataggcttcagcttgtactgcttgccggatgtgtg 86990

                                                                         
Query: 377   gttaatcaagaccgagttatcgaggtcgactgtgaccacatccccggtcttgcactcctt 436
             ||| |||| |||  | ||||| || || || |||||||||||||||||||||||||||||
Sbjct: 86991 gttgatcatgacgcaattatcaagttccaccgtgaccacatccccggtcttgcactcctt 87050



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>dbj|AP005006.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0519E06
          Length = 170634

 Score =  190 bits (96), Expect = 3e-45
 Identities = 159/180 (88%)
 Strand = Plus / Plus

                                                                         
Query: 257   tcacgcagatttggacgcgatcattccagtcttccgagcataagcgaagatccccccggc 316
             ||||||||| ||||| ||||||||||| |||||||| ||||| || |||||||| || ||
Sbjct: 29336 tcacgcagacttggatgcgatcattccggtcttccgggcataggcaaagatcccgcctgc 29395

                                                                         
Query: 317   ctcaataaccgggcctgcatcaccaataggcttcagcttgtactgcttgccggatgtgtg 376
             |||||||||||| || ||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 29396 ctcaataaccggcccggcatcgccgataggcttcagcttgtactgcttgccggatgtgtg 29455

                                                                         
Query: 377   gttaatcaagaccgagttatcgaggtcgactgtgaccacatccccggtcttgcactcctt 436
             ||| |||| |||  | ||||| || || || |||||||||||||||||||||||||||||
Sbjct: 29456 gttgatcatgacgcaattatcaagttccaccgtgaccacatccccggtcttgcactcctt 29515



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>dbj|AK120006.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-186-A03, full
           insert sequence
          Length = 1311

 Score =  190 bits (96), Expect = 3e-45
 Identities = 159/180 (88%)
 Strand = Plus / Minus

                                                                       
Query: 257 tcacgcagatttggacgcgatcattccagtcttccgagcataagcgaagatccccccggc 316
           ||||||||| ||||| ||||||||||| |||||||| ||||| || |||||||| || ||
Sbjct: 816 tcacgcagacttggatgcgatcattccggtcttccgggcataggcaaagatcccgcctgc 757

                                                                       
Query: 317 ctcaataaccgggcctgcatcaccaataggcttcagcttgtactgcttgccggatgtgtg 376
           |||||||||||| || ||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 756 ctcaataaccggcccggcatcgccgataggcttcagcttgtactgcttgccggatgtgtg 697

                                                                       
Query: 377 gttaatcaagaccgagttatcgaggtcgactgtgaccacatccccggtcttgcactcctt 436
           ||| |||| |||  | ||||| || || || |||||||||||||||||||||||||||||
Sbjct: 696 gttgatcatgacgcaattatcaagttccaccgtgaccacatccccggtcttgcactcctt 637



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>dbj|AK106107.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-D01, full
           insert sequence
          Length = 1141

 Score =  190 bits (96), Expect = 3e-45
 Identities = 159/180 (88%)
 Strand = Plus / Minus

                                                                       
Query: 257 tcacgcagatttggacgcgatcattccagtcttccgagcataagcgaagatccccccggc 316
           ||||||||| ||||| ||||||||||| |||||||| ||||| || |||||||| || ||
Sbjct: 819 tcacgcagacttggatgcgatcattccggtcttccgggcataggcaaagatcccgcctgc 760

                                                                       
Query: 317 ctcaataaccgggcctgcatcaccaataggcttcagcttgtactgcttgccggatgtgtg 376
           |||||||||||| || ||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 759 ctcaataaccggcccggcatcgccgataggcttcagcttgtactgcttgccggatgtgtg 700

                                                                       
Query: 377 gttaatcaagaccgagttatcgaggtcgactgtgaccacatccccggtcttgcactcctt 436
           ||| |||| |||  | ||||| || || || |||||||||||||||||||||||||||||
Sbjct: 699 gttgatcatgacgcaattatcaagttccaccgtgaccacatccccggtcttgcactcctt 640



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>dbj|AK103778.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033145B21, full
           insert sequence
          Length = 1092

 Score =  190 bits (96), Expect = 3e-45
 Identities = 159/180 (88%)
 Strand = Plus / Minus

                                                                       
Query: 257 tcacgcagatttggacgcgatcattccagtcttccgagcataagcgaagatccccccggc 316
           ||||||||| ||||| ||||||||||| |||||||| ||||| || |||||||| || ||
Sbjct: 785 tcacgcagacttggatgcgatcattccggtcttccgggcataggcaaagatcccgcctgc 726

                                                                       
Query: 317 ctcaataaccgggcctgcatcaccaataggcttcagcttgtactgcttgccggatgtgtg 376
           |||||||||||| || ||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 725 ctcaataaccggcccggcatcgccgataggcttcagcttgtactgcttgccggatgtgtg 666

                                                                       
Query: 377 gttaatcaagaccgagttatcgaggtcgactgtgaccacatccccggtcttgcactcctt 436
           ||| |||| |||  | ||||| || || || |||||||||||||||||||||||||||||
Sbjct: 665 gttgatcatgacgcaattatcaagttccaccgtgaccacatccccggtcttgcactcctt 606



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>dbj|AK061544.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-A03, full
           insert sequence
          Length = 1081

 Score =  190 bits (96), Expect = 3e-45
 Identities = 159/180 (88%)
 Strand = Plus / Minus

                                                                       
Query: 257 tcacgcagatttggacgcgatcattccagtcttccgagcataagcgaagatccccccggc 316
           ||||||||| ||||| ||||||||||| |||||||| ||||| || |||||||| || ||
Sbjct: 807 tcacgcagacttggatgcgatcattccggtcttccgggcataggcaaagatcccgcctgc 748

                                                                       
Query: 317 ctcaataaccgggcctgcatcaccaataggcttcagcttgtactgcttgccggatgtgtg 376
           |||||||||||| || ||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 747 ctcaataaccggcccggcatcgccgataggcttcagcttgtactgcttgccggatgtgtg 688

                                                                       
Query: 377 gttaatcaagaccgagttatcgaggtcgactgtgaccacatccccggtcttgcactcctt 436
           ||| |||| |||  | ||||| || || || |||||||||||||||||||||||||||||
Sbjct: 687 gttgatcatgacgcaattatcaagttccaccgtgaccacatccccggtcttgcactcctt 628



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>emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chromosome 2
          Length = 339972

 Score =  190 bits (96), Expect = 3e-45
 Identities = 159/180 (88%)
 Strand = Plus / Plus

                                                                          
Query: 257    tcacgcagatttggacgcgatcattccagtcttccgagcataagcgaagatccccccggc 316
              ||||||||| ||||| ||||||||||| |||||||| ||||| || |||||||| || ||
Sbjct: 192640 tcacgcagacttggatgcgatcattccggtcttccgggcataggcaaagatcccgcctgc 192699

                                                                          
Query: 317    ctcaataaccgggcctgcatcaccaataggcttcagcttgtactgcttgccggatgtgtg 376
              |||||||||||| || ||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 192700 ctcaataaccggcccggcatcgccgataggcttcagcttgtactgcttgccggatgtgtg 192759

                                                                          
Query: 377    gttaatcaagaccgagttatcgaggtcgactgtgaccacatccccggtcttgcactcctt 436
              ||| |||| |||  | ||||| || || || |||||||||||||||||||||||||||||
Sbjct: 192760 gttgatcatgacgcaattatcaagttccaccgtgaccacatccccggtcttgcactcctt 192819



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>gb|BT016386.1| Zea mays clone Contig219 mRNA sequence
          Length = 1075

 Score =  143 bits (72), Expect = 6e-31
 Identities = 150/176 (85%)
 Strand = Plus / Minus

                                                                       
Query: 261 gcagatttggacgcgatcattccagtcttccgagcataagcgaagatccccccggcctca 320
           |||| ||| ||||| |||||||| |||||||| || || || |||||||| || ||||||
Sbjct: 791 gcagctttcgacgcaatcattcctgtcttccgggcgtaggcaaagatccctcccgcctca 732

                                                                       
Query: 321 ataaccgggcctgcatcaccaataggcttcagcttgtactgcttgccggatgtgtggtta 380
           || || ||||| ||||||||||| || ||||||||||||| |||||| || |||||||||
Sbjct: 731 attacagggccagcatcaccaattggtttcagcttgtactccttgccagaggtgtggtta 672

                                                                   
Query: 381 atcaagaccgagttatcgaggtcgactgtgaccacatccccggtcttgcactcctt 436
           || || || |||||| | ||||| || |||||||||||||| ||||||||||||||
Sbjct: 671 ataaaaacggagttagcaaggtccacggtgaccacatcccctgtcttgcactcctt 616



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>gb|BT009140.1| Triticum aestivum clone wl1n.pk0048.a6:fis, full insert mRNA
           sequence
          Length = 1005

 Score =  143 bits (72), Expect = 6e-31
 Identities = 150/176 (85%)
 Strand = Plus / Minus

                                                                       
Query: 261 gcagatttggacgcgatcattccagtcttccgagcataagcgaagatccccccggcctca 320
           |||| ||| ||||| |||||||| |||||||| || || || |||||||| || ||||||
Sbjct: 728 gcagctttcgacgcaatcattcctgtcttccgggcgtaggcaaagatccctcccgcctca 669

                                                                       
Query: 321 ataaccgggcctgcatcaccaataggcttcagcttgtactgcttgccggatgtgtggtta 380
           || || ||||| ||||||||||| || ||||||||||||| |||||| || |||||||||
Sbjct: 668 attacagggccagcatcaccaattggtttcagcttgtactccttgccagaggtgtggtta 609

                                                                   
Query: 381 atcaagaccgagttatcgaggtcgactgtgaccacatccccggtcttgcactcctt 436
           || || || |||||| | ||||| || |||||||||||||| ||||||||||||||
Sbjct: 608 ataaaaacggagttagcaaggtccacggtgaccacatcccctgtcttgcactcctt 553



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>gb|AY109732.1| Zea mays CL1042_1 mRNA sequence
          Length = 1085

 Score =  143 bits (72), Expect = 6e-31
 Identities = 150/176 (85%)
 Strand = Plus / Minus

                                                                       
Query: 261 gcagatttggacgcgatcattccagtcttccgagcataagcgaagatccccccggcctca 320
           |||| ||| ||||| |||||||| |||||||| || || || |||||||| |||||||||
Sbjct: 753 gcagctttcgacgcaatcattcctgtcttccgggcgtaggcaaagatccctccggcctca 694

                                                                       
Query: 321 ataaccgggcctgcatcaccaataggcttcagcttgtactgcttgccggatgtgtggtta 380
           || || ||||| ||||||||||| || ||||||||||||| |||||| || |||||||||
Sbjct: 693 attacagggccagcatcaccaattggtttcagcttgtactccttgccagaggtgtggtta 634

                                                                   
Query: 381 atcaagaccgagttatcgaggtcgactgtgaccacatccccggtcttgcactcctt 436
           || ||  | |||||| | ||||| || |||||||||||||| ||||||||||||||
Sbjct: 633 ataaaagcggagttagcaaggtccacggtgaccacatcccctgtcttgcactcctt 578



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>gb|DQ002408.1| Zea mays gypsy retrotransposon huck, and copia retrotransposon ji,
             complete sequence; and helitron Mo17_14594, complete
             sequence
          Length = 57607

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 79/96 (82%)
 Strand = Plus / Minus

                                                                         
Query: 271   acgcgatcattccagtcttccgagcataagcgaagatccccccggcctcaataaccgggc 330
             |||| |||||||  |||||||| ||||| || |||||||| || |||||| | || || |
Sbjct: 48981 acgcaatcattcatgtcttccgggcataggcaaagatccctcccgcctcagttacaggac 48922

                                                 
Query: 331   ctgcatcaccaataggcttcagcttgtactgcttgc 366
             | ||||||||||| || ||||| ||||||| |||||
Sbjct: 48921 cagcatcaccaattggtttcaggttgtactccttgc 48886



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>gb|DQ002407.1| Zea mays copia retrotransposon opie1, gypsy retrotransposon grande1,
             xilon1 retrotransposon, helitron B73_14578, gypsy
             retrotransposon huck1 and ruda retrotransposon, complete
             sequence
          Length = 152384

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 79/96 (82%)
 Strand = Plus / Minus

                                                                         
Query: 271   acgcgatcattccagtcttccgagcataagcgaagatccccccggcctcaataaccgggc 330
             |||| |||||||  |||||||| ||||| || |||||||| || |||||| | || || |
Sbjct: 95737 acgcaatcattcatgtcttccgggcataggcaaagatccctcccgcctcagttacaggac 95678

                                                 
Query: 331   ctgcatcaccaataggcttcagcttgtactgcttgc 366
             | ||||||||||| || ||||| ||||||| |||||
Sbjct: 95677 cagcatcaccaattggtttcaggttgtactccttgc 95642



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>ref|NM_129870.2| Arabidopsis thaliana hydro-lyase AT2G43090 mRNA, complete cds
          Length = 1046

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 70/85 (82%)
 Strand = Plus / Minus

                                                                       
Query: 276 atcattccagtcttccgagcataagcgaagatccccccggcctcaataaccgggcctgca 335
           ||||||||||  |||| ||||||||| || || || || || ||||| || || || |||
Sbjct: 767 atcattccagctttcctagcataagcaaatataccaccagcatcaatcactggtccagca 708

                                    
Query: 336 tcaccaataggcttcagcttgtact 360
           |||||||| ||||| ||||||||||
Sbjct: 707 tcaccaatcggcttaagcttgtact 683



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>gb|AY063029.1| Arabidopsis thaliana putative 3-isopropylmalate dehydratase, small
           subunit (At2g43090) mRNA, complete cds
          Length = 787

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 70/85 (82%)
 Strand = Plus / Minus

                                                                       
Query: 276 atcattccagtcttccgagcataagcgaagatccccccggcctcaataaccgggcctgca 335
           ||||||||||  |||| ||||||||| || || || || || ||||| || || || |||
Sbjct: 737 atcattccagctttcctagcataagcaaatataccaccagcatcaatcactggtccagca 678

                                    
Query: 336 tcaccaataggcttcagcttgtact 360
           |||||||| ||||| ||||||||||
Sbjct: 677 tcaccaatcggcttaagcttgtact 653



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>gb|AY035158.1| Arabidopsis thaliana putative 3-isopropylmalate dehydratase, small
           subunit (At2g43090) mRNA, complete cds
          Length = 970

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 70/85 (82%)
 Strand = Plus / Minus

                                                                       
Query: 276 atcattccagtcttccgagcataagcgaagatccccccggcctcaataaccgggcctgca 335
           ||||||||||  |||| ||||||||| || || || || || ||||| || || || |||
Sbjct: 767 atcattccagctttcctagcataagcaaatataccaccagcatcaatcactggtccagca 708

                                    
Query: 336 tcaccaataggcttcagcttgtact 360
           |||||||| ||||| ||||||||||
Sbjct: 707 tcaccaatcggcttaagcttgtact 683



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>gb|AC006224.4| Arabidopsis thaliana chromosome 2 clone MFL8 map CIC10F02, complete
            sequence
          Length = 45714

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 70/85 (82%)
 Strand = Plus / Plus

                                                                        
Query: 276  atcattccagtcttccgagcataagcgaagatccccccggcctcaataaccgggcctgca 335
            ||||||||||  |||| ||||||||| || || || || || ||||| || || || |||
Sbjct: 9026 atcattccagctttcctagcataagcaaatataccaccagcatcaatcactggtccagca 9085

                                     
Query: 336  tcaccaataggcttcagcttgtact 360
            |||||||| ||||| ||||||||||
Sbjct: 9086 tcaccaatcggcttaagcttgtact 9110



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>gb|AC004450.3| Arabidopsis thaliana chromosome 2 clone F14B2 map CIC10F02, complete
            sequence
          Length = 90283

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 70/85 (82%)
 Strand = Plus / Minus

                                                                        
Query: 276  atcattccagtcttccgagcataagcgaagatccccccggcctcaataaccgggcctgca 335
            ||||||||||  |||| ||||||||| || || || || || ||||| || || || |||
Sbjct: 8756 atcattccagctttcctagcataagcaaatataccaccagcatcaatcactggtccagca 8697

                                     
Query: 336  tcaccaataggcttcagcttgtact 360
            |||||||| ||||| ||||||||||
Sbjct: 8696 tcaccaatcggcttaagcttgtact 8672



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>emb|BX822010.1|CNS0A8AQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL91ZH07 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 957

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 70/85 (82%)
 Strand = Plus / Minus

                                                                       
Query: 276 atcattccagtcttccgagcataagcgaagatccccccggcctcaataaccgggcctgca 335
           ||||||||||  |||| ||||||||| || || || || || ||||| || || || |||
Sbjct: 746 atcattccagctttcctagcataagcaaatataccaccagcatcaatcactggtccagca 687

                                    
Query: 336 tcaccaataggcttcagcttgtact 360
           |||||||| ||||| ||||||||||
Sbjct: 686 tcaccaatcggcttaagcttgtact 662



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>emb|BX821264.1|CNS0A860 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL30ZD05 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 917

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 70/85 (82%)
 Strand = Plus / Minus

                                                                       
Query: 276 atcattccagtcttccgagcataagcgaagatccccccggcctcaataaccgggcctgca 335
           ||||||||||  |||| ||||||||| || || || || || ||||| || || || |||
Sbjct: 754 atcattccagctttcctagcataagcaaatataccaccagcatcaatcactggtccagca 695

                                    
Query: 336 tcaccaataggcttcagcttgtact 360
           |||||||| ||||| ||||||||||
Sbjct: 694 tcaccaatcggcttaagcttgtact 670



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>gb|BT014469.1| Lycopersicon esculentum clone 133817F, mRNA sequence
          Length = 1346

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 63/76 (82%)
 Strand = Plus / Minus

                                                                       
Query: 276 atcattccagtcttccgagcataagcgaagatccccccggcctcaataaccgggcctgca 335
           |||||||||| ||| |  ||||||||||| || || || || ||||| || || || |||
Sbjct: 800 atcattccagcctttcttgcataagcgaaaatgccaccagcttcaatgacaggaccagca 741

                           
Query: 336 tcaccaataggcttca 351
           ||||||||||||||||
Sbjct: 740 tcaccaataggcttca 725



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>gb|AY087084.1| Arabidopsis thaliana clone 31507 mRNA, complete sequence
          Length = 945

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 69/85 (81%)
 Strand = Plus / Minus

                                                                       
Query: 276 atcattccagtcttccgagcataagcgaagatccccccggcctcaataaccgggcctgca 335
           ||||||||||  |||| ||||||||| || || || || || ||||| || || || |||
Sbjct: 767 atcattccagctttcctagcataagcaaatataccaccagcatcaatcactggtccagca 708

                                    
Query: 336 tcaccaataggcttcagcttgtact 360
           |||||||| ||||| ||||| ||||
Sbjct: 707 tcaccaatcggcttaagcttatact 683



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>emb|BX324157.4| Zebrafish DNA sequence from clone DKEY-15N1 in linkage group 3,
            complete sequence
          Length = 272769

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 423  gtcttgcactccttgctggc 442
            ||||||||||||||||||||
Sbjct: 5358 gtcttgcactccttgctggc 5377



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>dbj|AP003035.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-482L11, complete
              sequence
          Length = 170638

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 126    tcaaagtagtagcaaaactg 145
              ||||||||||||||||||||
Sbjct: 126110 tcaaagtagtagcaaaactg 126129



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>gb|AC109606.11| Mus musculus strain C57BL/6J chromosome 5 clone rp23-113m20, complete
             sequence
          Length = 210959

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 218   gctcaactaatctgacagca 237
             ||||||||||||||||||||
Sbjct: 65291 gctcaactaatctgacagca 65272


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,890,949
Number of Sequences: 3902068
Number of extensions: 2890949
Number of successful extensions: 46874
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46811
Number of HSP's gapped (non-prelim): 63
length of query: 442
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 420
effective length of database: 17,147,199,772
effective search space: 7201823904240
effective search space used: 7201823904240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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