ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl32e07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YCF19_CYACA (Q9TM45) Hypothetical 10.5 kDa protein ycf19 29 4.2
2YCF19_PORPU (P51353) Hypothetical 10.8 kDa protein ycf19 (ORF95) 28 7.2
3HPPA_THETN (Q8RCX1) Pyrophosphate-energized proton pump (EC 3.6.... 28 9.4
4CAPS_DROME (Q9NHE5) Calcium-dependent secretion activator (dCAPS) 28 9.4
5YLD2_CAEEL (Q03567) Hypothetical protein C38C10.2 in chromosome III 28 9.4
6Y328_MYCGE (Q49419) Hypothetical protein MG328 28 9.4

>YCF19_CYACA (Q9TM45) Hypothetical 10.5 kDa protein ycf19|
          Length = 91

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 267 LFIVPLLLSLALGWNTATRLHLNPLLSTSDITSPY 163
           ++IV +LL ++LGW      +  P  S S ++ PY
Sbjct: 18  IYIVLILLRMSLGWFPNINWYSQPFYSLSQLSDPY 52



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>YCF19_PORPU (P51353) Hypothetical 10.8 kDa protein ycf19 (ORF95)|
          Length = 95

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -3

Query: 291 LGSSSK-ENLFIVPLLLSLALGWNTATRLHLNPLLSTSDITSPY 163
           LGS +    ++++ +LL L+L W      +  P  S + IT PY
Sbjct: 12  LGSIANFSEIYLILILLKLSLAWFPTVNWYNEPFCSLNRITDPY 55



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>HPPA_THETN (Q8RCX1) Pyrophosphate-energized proton pump (EC 3.6.1.1)|
           (Pyrophosphate-energized inorganic pyrophosphatase)
           (H+-PPase) (Membrane-bound proton-translocating
           pyrophosphatase)
          Length = 711

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -1

Query: 188 RPATSLAHIDIGKGPSVVVGAYIYICIVYL 99
           +P  S   +DIGK P V +GA+I   IVYL
Sbjct: 521 KPIDSWFPVDIGK-PEVFIGAFIGAMIVYL 549



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>CAPS_DROME (Q9NHE5) Calcium-dependent secretion activator (dCAPS)|
          Length = 1436

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 20/59 (33%), Positives = 27/59 (45%)
 Frame = +3

Query: 186 SRAADSDVAVSRCSSLEQEKAKEEQ*TGSPLMTNQVQKSRLCFVVFRRLVGRCGSYPFN 362
           SRA      +S   SL  EK +  +  G      + +K R+   VF   + RC SYPFN
Sbjct: 128 SRANSLPRPLSPSPSLTSEKHETAEPHGKHEREEEERKRRIQLYVF---ISRCISYPFN 183



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>YLD2_CAEEL (Q03567) Hypothetical protein C38C10.2 in chromosome III|
          Length = 493

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -3

Query: 177 ITSPY*Y--WQGSFGGSRRVYIYMYSLPVFPNDVISL 73
           +TSP  +  W G F G    Y  + SLP F  DV+ L
Sbjct: 268 LTSPAVWACWAGHFAGDWGAYTMLVSLPSFLKDVLGL 304



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>Y328_MYCGE (Q49419) Hypothetical protein MG328|
          Length = 756

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 183 WSRAADSDVAVSRCSSLEQEKAKEEQ*TGSPLMTNQVQ 296
           W+R+ D+D   ++ S  EQ+KA +E+  G  +   Q+Q
Sbjct: 462 WTRSKDNDFNNTKNSFEEQKKALDEKLNGLTIQNQQLQ 499


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,214,273
Number of Sequences: 219361
Number of extensions: 1163923
Number of successful extensions: 2919
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2919
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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