Clone Name | rbastl32e07 |
---|---|
Clone Library Name | barley_pub |
>emb|AL845160.8| Mouse DNA sequence from clone RP23-303O15 on chromosome 2, complete sequence Length = 170074 Score = 44.1 bits (22), Expect = 0.37 Identities = 31/34 (91%) Strand = Plus / Plus Query: 241 agaaagcaaaagaggaacaatgaacaggttctcc 274 ||||| ||||| |||||||||||||||| ||||| Sbjct: 129288 agaaaacaaaacaggaacaatgaacaggatctcc 129321
>emb|AL096707.13|HSJ729N16 Human DNA sequence from clone RP4-729N16 on chromosome 10, complete sequence Length = 154469 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 71 aaaagggaaattacgtcattaggaa 95 ||||||||||||| ||||||||||| Sbjct: 18414 aaaagggaaattatgtcattaggaa 18438
>emb|AL844596.5| Mouse DNA sequence from clone RP23-35J22 on chromosome 2, complete sequence Length = 128775 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 233 agagcaagagaaagcaaaaga 253 ||||||||||||||||||||| Sbjct: 73806 agagcaagagaaagcaaaaga 73826
>ref|NM_101054.2| Arabidopsis thaliana hydrolase, hydrolyzing O-glycosyl compounds AT1G11820 mRNA, complete cds Length = 1559 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 aacaggttctcctttgatga 282 |||||||||||||||||||| Sbjct: 822 aacaggttctcctttgatga 841
>gb|AC161435.7| Mus musculus chromosome 8, clone RP23-78L21, complete sequence Length = 219937 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 aaggtaaaaagggaaattac 84 |||||||||||||||||||| Sbjct: 4879 aaggtaaaaagggaaattac 4898
>gb|AC120144.11| Mus musculus chromosome 8, clone RP24-427K8, complete sequence Length = 210003 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 aaggtaaaaagggaaattac 84 |||||||||||||||||||| Sbjct: 103208 aaggtaaaaagggaaattac 103227
>gb|AC139324.4| Mus musculus chromosome 18 clone RP24-393N23, complete sequence Length = 180267 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 agcaagagaaagcaaaagag 254 |||||||||||||||||||| Sbjct: 138155 agcaagagaaagcaaaagag 138174
>gb|AC158548.10| Mus musculus chromosome 5, clone RP23-258F17, complete sequence Length = 227065 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 aagagaaagcaaaagaggaa 257 |||||||||||||||||||| Sbjct: 78197 aagagaaagcaaaagaggaa 78216
>gb|AC150651.3| Bos taurus BAC CH240-451E16 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 174648 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 239 agagaaagcaaaagaggaacaatg 262 ||||||||||||||||||| |||| Sbjct: 14864 agagaaagcaaaagaggaaaaatg 14887
>emb|CR751601.8| Zebrafish DNA sequence from clone CH211-162E3 in linkage group 14, complete sequence Length = 141943 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 305 tctttgttttgttgttttca 324 |||||||||||||||||||| Sbjct: 78714 tctttgttttgttgttttca 78733
>gb|AC132244.3| Mus musculus BAC clone RP24-419I10 from chromosome 14, complete sequence Length = 185581 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 tcgtctttgttttgttgttt 321 |||||||||||||||||||| Sbjct: 50208 tcgtctttgttttgttgttt 50227
>gb|AC121997.3| Mus musculus BAC clone RP24-312G4 from chromosome 14, complete sequence Length = 143266 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 tcgtctttgttttgttgttt 321 |||||||||||||||||||| Sbjct: 132292 tcgtctttgttttgttgttt 132311
>gb|AC117243.3| Mus musculus BAC clone RP24-198D9 from 9, complete sequence Length = 168127 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 tttgttttgttgttttcagg 326 |||||||||||||||||||| Sbjct: 143841 tttgttttgttgttttcagg 143860
>emb|AL606804.11| Human DNA sequence from clone RP11-978I15 on chromosome 1 Contains the 3' end of the CIAS1 gene for cold autoinflammatory syndrome 1, the gene for a novel 7 transmembrane receptor (rhodopsin family) protein, a 7 transmembrane receptor (rhodopsin family) pseudogene, two novel genes (LOC148823, LOC148824), the OR2C3 gene for olfactory receptor family 2 subfamily C member 3, the 3' end of a novel gene, the OR2G2 for olfactory receptor family 2 subfamily G member 2, the OR2G3 for olfactory receptor family 2 subfamily G member 3, the gene for a novel protein similar to Olfactory receptor 5AV1 (LOC127617) and three CpG islands, complete sequence Length = 185467 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 aaggtaaaaagggaaattac 84 |||||||||||||||||||| Sbjct: 137980 aaggtaaaaagggaaattac 137999
>emb|AL356732.10| Human DNA sequence from clone RP11-190K16 on chromosome 13 Contains an ADP-ribosylation factor pseudogene and part of a novel gene (FLJ22153), complete sequence Length = 77950 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 agcctagagcaagagaaagc 247 |||||||||||||||||||| Sbjct: 8674 agcctagagcaagagaaagc 8693
>gb|AC175313.5| Mus musculus chromosome 5, clone wi1-1204C16, complete sequence Length = 38414 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 306 ctttgttttgttgttttcag 325 |||||||||||||||||||| Sbjct: 22992 ctttgttttgttgttttcag 23011
>gb|AC175314.3| Mus musculus chromosome 5, clone wi1-1538A18, complete sequence Length = 38195 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 306 ctttgttttgttgttttcag 325 |||||||||||||||||||| Sbjct: 33776 ctttgttttgttgttttcag 33757
>gb|AC141002.8| Homo sapiens 3 BAC RP11-572O6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 138981 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 agcaagagaaagcaaaagag 254 |||||||||||||||||||| Sbjct: 105076 agcaagagaaagcaaaagag 105095
>gb|AC067733.22| Homo sapiens 3 BAC RP11-148K3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 170124 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 228 agcctagagcaagagaaagc 247 |||||||||||||||||||| Sbjct: 118812 agcctagagcaagagaaagc 118793
>gb|AE014178.1| Mus musculus piebald deletion region section 6 of 11 of the complete sequence Length = 400029 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 tcgtctttgttttgttgttt 321 |||||||||||||||||||| Sbjct: 289514 tcgtctttgttttgttgttt 289533
>gb|AC023511.17| Homo sapiens 12 BAC RP11-776A13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 175631 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 233 agagcaagagaaagcaaaagagga 256 ||||||||||||||||| |||||| Sbjct: 8778 agagcaagagaaagcaagagagga 8801
>emb|BX571981.5| Zebrafish DNA sequence from clone DKEY-31J3 in linkage group 14, complete sequence Length = 258091 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 tctttgttttgttgttttca 324 |||||||||||||||||||| Sbjct: 189265 tctttgttttgttgttttca 189246
>emb|BX465854.7| Zebrafish DNA sequence from clone DKEY-208M10 in linkage group 12, complete sequence Length = 204314 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 243 aaagcaaaagaggaacaatg 262 |||||||||||||||||||| Sbjct: 101743 aaagcaaaagaggaacaatg 101762
>emb|BX465192.7| Zebrafish DNA sequence from clone CH211-202P4 in linkage group 12, complete sequence Length = 200890 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 aaagcaaaagaggaacaatg 262 |||||||||||||||||||| Sbjct: 160585 aaagcaaaagaggaacaatg 160566
>emb|BX842557.1|CNS0AELB Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS85ZD06 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1572 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 aacaggttctcctttgatga 282 |||||||||||||||||||| Sbjct: 822 aacaggttctcctttgatga 841
>gb|BT004271.1| Arabidopsis thaliana clone RAFL15-44-G06 (R50092) unknown protein (At1g11820) mRNA, complete cds Length = 1480 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 aacaggttctcctttgatga 282 |||||||||||||||||||| Sbjct: 431 aacaggttctcctttgatga 450
>dbj|BS000126.1| Pan troglodytes chromosome 22 clone:PTB-128A24, map 22, complete sequences Length = 207747 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 ctagagcaagagaaagcaaa 250 |||||||||||||||||||| Sbjct: 76486 ctagagcaagagaaagcaaa 76467
>dbj|BS000103.1| Pan troglodytes chromosome 22 clone:PTB-031J04, map 22, complete sequences Length = 164274 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 tttgttttgttgttttcagg 326 |||||||||||||||||||| Sbjct: 41186 tttgttttgttgttttcagg 41205
>gb|AC116483.10| Mus musculus chromosome 1, clone RP23-424K5, complete sequence Length = 194546 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 tttgttttgttgttttcagg 326 |||||||||||||||||||| Sbjct: 126477 tttgttttgttgttttcagg 126458
>dbj|AP001730.1| Homo sapiens genomic DNA, chromosome 21q, section 74/105 Length = 340000 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 ctagagcaagagaaagcaaa 250 |||||||||||||||||||| Sbjct: 239172 ctagagcaagagaaagcaaa 239153
>dbj|AP001693.1| Homo sapiens genomic DNA, chromosome 21q, section 37/105 Length = 340000 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 tttgttttgttgttttcagg 326 |||||||||||||||||||| Sbjct: 138318 tttgttttgttgttttcagg 138337
>emb|AL928949.12| Mouse DNA sequence from clone RP23-226K16 on chromosome 2, complete sequence Length = 200500 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 ctagagcaagagaaagcaaa 250 |||||||||||||||||||| Sbjct: 173893 ctagagcaagagaaagcaaa 173912
>gb|AC002131.1|F12F1 Arabidopsis thaliana chromosome 1 BAC F12F1 sequence, complete sequence Length = 123386 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 aacaggttctcctttgatga 282 |||||||||||||||||||| Sbjct: 122151 aacaggttctcctttgatga 122170
>gb|BC051779.1| Danio rerio ATPase, Ca++ transporting, cardiac muscle, fast twitch 1 like, mRNA (cDNA clone IMAGE:5413761), containing frame-shift errors Length = 3004 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 235 agcaagagaaagcaaaagaggaacaatg 262 ||||||||||| ||||||||||||||| Sbjct: 2875 agcaagagaaaaaaaaagaggaacaatg 2902
>emb|AL611924.14| Mouse DNA sequence from clone RP23-106K5 on chromosome 4, complete sequence Length = 164958 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 gtctttgttttgttgttttc 323 |||||||||||||||||||| Sbjct: 161481 gtctttgttttgttgttttc 161500
>emb|X03490.1|CTBR1G3 Chironomus tentans BR1 (Balbiani ring) gene 3' end Length = 2706 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 gtctttgttttgttgttttc 323 |||||||||||||||||||| Sbjct: 1405 gtctttgttttgttgttttc 1424
>emb|X05621.1|CPBR1G Chironomus pallidivittatus BR1 gene for giant secretory protein Length = 1321 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 gtctttgttttgttgttttc 323 |||||||||||||||||||| Sbjct: 1179 gtctttgttttgttgttttc 1198
>gb|M93145.1|HUMRSTETA Human tetranucleotide repeat DNA Length = 1101 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 tttgttttgttgttttcagg 326 |||||||||||||||||||| Sbjct: 546 tttgttttgttgttttcagg 565
>dbj|AP000159.1| Homo sapiens genomic DNA, chromosome 21q22.2, DSCR region, clone D47-S479, segment 11/16, complete sequence Length = 100000 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 ctagagcaagagaaagcaaa 250 |||||||||||||||||||| Sbjct: 86589 ctagagcaagagaaagcaaa 86570
>dbj|AP000018.2| Homo sapiens genomic DNA of 21q22.2 Down Syndrome region, segment 9/13 Length = 100000 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 ctagagcaagagaaagcaaa 250 |||||||||||||||||||| Sbjct: 20985 ctagagcaagagaaagcaaa 20966
>dbj|AP001348.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2 clone:f39G8, LL56-APP region, complete sequence Length = 18628 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 tttgttttgttgttttcagg 326 |||||||||||||||||||| Sbjct: 16886 tttgttttgttgttttcagg 16905
>dbj|AP001410.1| Homo sapiens genomic DNA, chromosome 21q22.2, clone:7A4, LB7T-ERG region, complete sequence Length = 39834 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 ctagagcaagagaaagcaaa 250 |||||||||||||||||||| Sbjct: 19679 ctagagcaagagaaagcaaa 19660 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,892,970 Number of Sequences: 3902068 Number of extensions: 3892970 Number of successful extensions: 84283 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 84205 Number of HSP's gapped (non-prelim): 78 length of query: 431 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 409 effective length of database: 17,147,199,772 effective search space: 7013204706748 effective search space used: 7013204706748 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)