Clone Name | rbastl32e05 |
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Clone Library Name | barley_pub |
>gb|AC108763.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBb0004A05, complete sequence Length = 157913 Score = 119 bits (60), Expect = 8e-24 Identities = 156/188 (82%) Strand = Plus / Minus Query: 280 ttgctcatgaatattgcaaccggctcaccaggggaaggcggattcttgtctagcagagaa 339 ||||||||||| ||||| || ||||||||||| |||||||| ||||||| |||| |||| Sbjct: 115528 ttgctcatgaagattgctactggctcaccaggagaaggcggggtcttgtccagcatagaa 115469 Query: 340 gcatgctttccagctttggcacgagcagctccatcaagtgccgacaggacctcaacatgc 399 |||||| |||||||| ||||||||||| ||||| || ||||||||||| |||| Sbjct: 115468 gcatgcacgccagctttagcacgagcagcctcatcagaagcagacaggacctctgcatgt 115409 Query: 400 tcaagacccaactgccttctgatcagctctaggttctcctcaagcacattaatttcacca 459 ||||| || | |||||| |||||||||| | ||||||||| || ||| | ||||||||| Sbjct: 115408 tcaaggcctacctgcctcttgatcagctccaagttctcctcgagaacactcatttcacca 115349 Query: 460 aaaggaag 467 |||||||| Sbjct: 115348 aaaggaag 115341
>dbj|AK099796.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013097H06, full insert sequence Length = 3673 Score = 119 bits (60), Expect = 8e-24 Identities = 156/188 (82%) Strand = Plus / Minus Query: 280 ttgctcatgaatattgcaaccggctcaccaggggaaggcggattcttgtctagcagagaa 339 ||||||||||| ||||| || ||||||||||| |||||||| ||||||| |||| |||| Sbjct: 3402 ttgctcatgaagattgctactggctcaccaggagaaggcggggtcttgtccagcatagaa 3343 Query: 340 gcatgctttccagctttggcacgagcagctccatcaagtgccgacaggacctcaacatgc 399 |||||| |||||||| ||||||||||| ||||| || ||||||||||| |||| Sbjct: 3342 gcatgcacgccagctttagcacgagcagcctcatcagaagcagacaggacctctgcatgt 3283 Query: 400 tcaagacccaactgccttctgatcagctctaggttctcctcaagcacattaatttcacca 459 ||||| || | |||||| |||||||||| | ||||||||| || ||| | ||||||||| Sbjct: 3282 tcaaggcctacctgcctcttgatcagctccaagttctcctcgagaacactcatttcacca 3223 Query: 460 aaaggaag 467 |||||||| Sbjct: 3222 aaaggaag 3215
>dbj|AK100624.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108I24, full insert sequence Length = 3669 Score = 119 bits (60), Expect = 8e-24 Identities = 156/188 (82%) Strand = Plus / Minus Query: 280 ttgctcatgaatattgcaaccggctcaccaggggaaggcggattcttgtctagcagagaa 339 ||||||||||| ||||| || ||||||||||| |||||||| ||||||| |||| |||| Sbjct: 3402 ttgctcatgaagattgctactggctcaccaggagaaggcggggtcttgtccagcatagaa 3343 Query: 340 gcatgctttccagctttggcacgagcagctccatcaagtgccgacaggacctcaacatgc 399 |||||| |||||||| ||||||||||| ||||| || ||||||||||| |||| Sbjct: 3342 gcatgcacgccagctttagcacgagcagcctcatcagaagcagacaggacctctgcatgt 3283 Query: 400 tcaagacccaactgccttctgatcagctctaggttctcctcaagcacattaatttcacca 459 ||||| || | |||||| |||||||||| | ||||||||| || ||| | ||||||||| Sbjct: 3282 tcaaggcctacctgcctcttgatcagctccaagttctcctcgagaacactcatttcacca 3223 Query: 460 aaaggaag 467 |||||||| Sbjct: 3222 aaaggaag 3215
>dbj|AK062108.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-B04, full insert sequence Length = 1434 Score = 119 bits (60), Expect = 8e-24 Identities = 156/188 (82%) Strand = Plus / Minus Query: 280 ttgctcatgaatattgcaaccggctcaccaggggaaggcggattcttgtctagcagagaa 339 ||||||||||| ||||| || ||||||||||| |||||||| ||||||| |||| |||| Sbjct: 1182 ttgctcatgaagattgctactggctcaccaggagaaggcggggtcttgtccagcatagaa 1123 Query: 340 gcatgctttccagctttggcacgagcagctccatcaagtgccgacaggacctcaacatgc 399 |||||| |||||||| ||||||||||| ||||| || ||||||||||| |||| Sbjct: 1122 gcatgcacgccagctttagcacgagcagcctcatcagaagcagacaggacctctgcatgt 1063 Query: 400 tcaagacccaactgccttctgatcagctctaggttctcctcaagcacattaatttcacca 459 ||||| || | |||||| |||||||||| | ||||||||| || ||| | ||||||||| Sbjct: 1062 tcaaggcctacctgcctcttgatcagctccaagttctcctcgagaacactcatttcacca 1003 Query: 460 aaaggaag 467 |||||||| Sbjct: 1002 aaaggaag 995
>ref|XM_450769.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3772 Score = 69.9 bits (35), Expect = 7e-09 Identities = 164/207 (79%) Strand = Plus / Minus Query: 261 ctggacttcaaactcctgcttgctcatgaatattgcaaccggctcaccaggggaaggcgg 320 |||| ||||||||||||||||||| ||||| ||||| || || |||||||| |||||||| Sbjct: 3412 ctgggcttcaaactcctgcttgctgatgaagattgctactggttcaccaggagaaggcgg 3353 Query: 321 attcttgtctagcagagaagcatgctttccagctttggcacgagcagctccatcaagtgc 380 ||||||| | || ||| |||| ||||| || ||||||| ||| ||||| || Sbjct: 3352 ggtcttgtccaacattgaaacatgagcaccagccttagcacgagttgcttcatcagaagc 3293 Query: 381 cgacaggacctcaacatgctcaagacccaactgccttctgatcagctctaggttctcctc 440 |||| |||||| ||||| ||||| || | |||||| |||||| ||| | |||||||| Sbjct: 3292 tgacaagacctctacatggtcaaggcctacctgcctcttgatcaactccaaattctcctc 3233 Query: 441 aagcacattaatttcaccaaaaggaag 467 || ||||| ||||||||||| ||||| Sbjct: 3232 gagaacattcatttcaccaaatggaag 3206
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 69.9 bits (35), Expect = 7e-09 Identities = 164/207 (79%) Strand = Plus / Plus Query: 261 ctggacttcaaactcctgcttgctcatgaatattgcaaccggctcaccaggggaaggcgg 320 |||| ||||||||||||||||||| ||||| ||||| || || |||||||| |||||||| Sbjct: 12677388 ctgggcttcaaactcctgcttgctgatgaagattgctactggttcaccaggagaaggcgg 12677447 Query: 321 attcttgtctagcagagaagcatgctttccagctttggcacgagcagctccatcaagtgc 380 ||||||| | || ||| |||| ||||| || ||||||| ||| ||||| || Sbjct: 12677448 ggtcttgtccaacattgaaacatgagcaccagccttagcacgagttgcttcatcagaagc 12677507 Query: 381 cgacaggacctcaacatgctcaagacccaactgccttctgatcagctctaggttctcctc 440 |||| |||||| ||||| ||||| || | |||||| |||||| ||| | |||||||| Sbjct: 12677508 tgacaagacctctacatggtcaaggcctacctgcctcttgatcaactccaaattctcctc 12677567 Query: 441 aagcacattaatttcaccaaaaggaag 467 || ||||| ||||||||||| ||||| Sbjct: 12677568 gagaacattcatttcaccaaatggaag 12677594 Score = 42.1 bits (21), Expect = 1.6 Identities = 45/53 (84%) Strand = Plus / Minus Query: 323 tcttgtctagcagagaagcatgctttccagctttggcacgagcagctccatca 375 ||||||| |||| ||| |||||| |||||||| |||||||||||| ||||| Sbjct: 19184554 tcttgtccagcatagaggcatgcacgccagctttagcacgagcagcttcatca 19184502 Score = 42.1 bits (21), Expect = 1.6 Identities = 42/49 (85%) Strand = Plus / Minus Query: 419 tgatcagctctaggttctcctcaagcacattaatttcaccaaaaggaag 467 |||||||||| | || |||||| || ||| | ||||||||||||||||| Sbjct: 19184459 tgatcagctccaagtcctcctcgagaacactcatttcaccaaaaggaag 19184411
>dbj|AP005838.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0041C07 Length = 179047 Score = 69.9 bits (35), Expect = 7e-09 Identities = 164/207 (79%) Strand = Plus / Plus Query: 261 ctggacttcaaactcctgcttgctcatgaatattgcaaccggctcaccaggggaaggcgg 320 |||| ||||||||||||||||||| ||||| ||||| || || |||||||| |||||||| Sbjct: 143326 ctgggcttcaaactcctgcttgctgatgaagattgctactggttcaccaggagaaggcgg 143385 Query: 321 attcttgtctagcagagaagcatgctttccagctttggcacgagcagctccatcaagtgc 380 ||||||| | || ||| |||| ||||| || ||||||| ||| ||||| || Sbjct: 143386 ggtcttgtccaacattgaaacatgagcaccagccttagcacgagttgcttcatcagaagc 143445 Query: 381 cgacaggacctcaacatgctcaagacccaactgccttctgatcagctctaggttctcctc 440 |||| |||||| ||||| ||||| || | |||||| |||||| ||| | |||||||| Sbjct: 143446 tgacaagacctctacatggtcaaggcctacctgcctcttgatcaactccaaattctcctc 143505 Query: 441 aagcacattaatttcaccaaaaggaag 467 || ||||| ||||||||||| ||||| Sbjct: 143506 gagaacattcatttcaccaaatggaag 143532
>dbj|AK068860.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169D12, full insert sequence Length = 3772 Score = 69.9 bits (35), Expect = 7e-09 Identities = 164/207 (79%) Strand = Plus / Minus Query: 261 ctggacttcaaactcctgcttgctcatgaatattgcaaccggctcaccaggggaaggcgg 320 |||| ||||||||||||||||||| ||||| ||||| || || |||||||| |||||||| Sbjct: 3412 ctgggcttcaaactcctgcttgctgatgaagattgctactggttcaccaggagaaggcgg 3353 Query: 321 attcttgtctagcagagaagcatgctttccagctttggcacgagcagctccatcaagtgc 380 ||||||| | || ||| |||| ||||| || ||||||| ||| ||||| || Sbjct: 3352 ggtcttgtccaacattgaaacatgagcaccagccttagcacgagttgcttcatcagaagc 3293 Query: 381 cgacaggacctcaacatgctcaagacccaactgccttctgatcagctctaggttctcctc 440 |||| |||||| ||||| ||||| || | |||||| |||||| ||| | |||||||| Sbjct: 3292 tgacaagacctctacatggtcaaggcctacctgcctcttgatcaactccaaattctcctc 3233 Query: 441 aagcacattaatttcaccaaaaggaag 467 || ||||| ||||||||||| ||||| Sbjct: 3232 gagaacattcatttcaccaaatggaag 3206
>emb|AL138767.15| Human DNA sequence from clone RP11-57C13 on chromosome 10 Contains the 3' end of the MINPP gene for multiple inositol polyphosphate histidine phosphatase 1, three novel genes, a ribosomal protein S26 (RPS26) pseudogene, the 5' end of the PAPSS2 gene for 3'-phosphoadenosine 5'-phosphosulfate synthase 2 and a CpG island, complete sequence Length = 111645 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 243 ttaatctgaagcttaaatctg 263 ||||||||||||||||||||| Sbjct: 43696 ttaatctgaagcttaaatctg 43716
>gb|AF386797.1| Entamoeba histolytica signal recognition particle 54 kDa subunit SRP54, proteasome alpha subunit, serine-threonine protein kinase YAK1, and serine-threonine protein kinase PK2 genes, complete cds Length = 7049 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 aagtaaacaaactagacattg 21 ||||||||||||||||||||| Sbjct: 5893 aagtaaacaaactagacattg 5873
>gb|AC116696.20| Mus musculus chromosome 3, clone RP24-425N23, complete sequence Length = 168053 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 agaatgcacattgtattctg 55 |||||||||||||||||||| Sbjct: 62501 agaatgcacattgtattctg 62482
>gb|AE014849.1| Plasmodium falciparum 3D7 chromosome 12, section 6 of 9 of the complete sequence Length = 250421 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 acattaatttcaccaaaagg 464 |||||||||||||||||||| Sbjct: 160847 acattaatttcaccaaaagg 160828
>ref|XM_417954.1| PREDICTED: Gallus gallus similar to RIKEN cDNA 1200009H11 (LOC419818), mRNA Length = 1413 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 caaagttctgtgagaagatt 244 |||||||||||||||||||| Sbjct: 512 caaagttctgtgagaagatt 531
>gb|AC122312.3| Mus musculus BAC clone RP23-298K16 from 19, complete sequence Length = 206657 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 catgttcccaacaggcgcgt 161 |||||||||||||||||||| Sbjct: 61574 catgttcccaacaggcgcgt 61555
>emb|AL133326.10| Human DNA sequence from clone RP3-398D13 on chromosome 6p24.3-25.3 Contains the 5' end of the F13A1 gene for coagulation factor XIII A chain precursor, a SNAP19 (sRNA activating protein complex 19kDa subunit) pseudogene and two putative novel gene, complete sequence Length = 147038 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 ttctttccatgttcccaaca 154 |||||||||||||||||||| Sbjct: 43804 ttctttccatgttcccaaca 43785
>emb|AL049814.6|HSDJ1C16 Human DNA sequence from clone RP1-1C16 on chromosome 6p12.2-21.1, complete sequence Length = 113693 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 ataaagcaagaatgcacatt 47 |||||||||||||||||||| Sbjct: 8955 ataaagcaagaatgcacatt 8974
>gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome Length = 2679306 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 441 aagcacattaatttcaccaa 460 |||||||||||||||||||| Sbjct: 1596135 aagcacattaatttcaccaa 1596116
>gb|AF418272.1|AF418272 Homo sapiens coagulation factor XIII, A1 polypeptide (F13A1) gene, complete cds Length = 178952 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 ttctttccatgttcccaaca 154 |||||||||||||||||||| Sbjct: 54994 ttctttccatgttcccaaca 55013
>emb|CR338830.1| Gallus gallus finished cDNA, clone ChEST974l3 Length = 887 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 caaagttctgtgagaagatt 244 |||||||||||||||||||| Sbjct: 406 caaagttctgtgagaagatt 425
>ref|XM_396214.2| PREDICTED: Apis mellifera similar to Rap1-interacting factor 1 (LOC412761), mRNA Length = 5973 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 aattggcaaaagcttggaaa 90 |||||||||||||||||||| Sbjct: 1721 aattggcaaaagcttggaaa 1740
>dbj|AB088221.1| Papaya leaf-distortion mosaic potyvirus genomic RNA, complete genome, strain:P Length = 10153 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 78 aaaagcttggaaactaagtt 97 |||||||||||||||||||| Sbjct: 4844 aaaagcttggaaactaagtt 4825
>emb|AL844144.10| Mouse DNA sequence from clone RP23-204D17 on chromosome 2, complete sequence Length = 178965 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 161 tcatgctggaatgaaaaggaggaa 184 ||||||||||| |||||||||||| Sbjct: 123412 tcatgctggaaagaaaaggaggaa 123389
>gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome Length = 2519802 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 441 aagcacattaatttcaccaa 460 |||||||||||||||||||| Sbjct: 1207568 aagcacattaatttcaccaa 1207587
>gb|AC160645.2| Gallus gallus BAC clone CH261-21L11 from chromosome unknown, complete sequence Length = 223748 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 ctggacttcaaactcctgct 280 |||||||||||||||||||| Sbjct: 188249 ctggacttcaaactcctgct 188230
>emb|AL583890.13| Mouse DNA sequence from clone RP23-212F17 on chromosome 3, complete sequence Length = 122919 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 51 ttctgtacttgccatctcaaaatt 74 ||||| |||||||||||||||||| Sbjct: 39713 ttctgcacttgccatctcaaaatt 39690 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,928,707 Number of Sequences: 3902068 Number of extensions: 4928707 Number of successful extensions: 79048 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 78939 Number of HSP's gapped (non-prelim): 109 length of query: 467 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 445 effective length of database: 17,147,199,772 effective search space: 7630503898540 effective search space used: 7630503898540 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)