Clone Name | rbastl32e04 |
---|---|
Clone Library Name | barley_pub |
>TT1_ARATH (Q8VWG3) TRANSPARENT TESTA 1 protein (Zinc finger protein TT1)| (TTL1) Length = 303 Score = 30.8 bits (68), Expect = 0.89 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 9/60 (15%) Frame = +1 Query: 124 RKQPATTNNTRPMIERARPRYY-IFGMSFH-------PPSSFRTCRCHYRRRQ-HRPFPC 276 RK P + T+P P Y + G H P FRT + HY+R+ H+PF C Sbjct: 172 RKGPESLKGTQPRAMLGIPCYCCVEGCRNHIDHPRSKPLKDFRTLQTHYKRKHGHKPFSC 231
>IL21R_HUMAN (Q9HBE5) Interleukin-21 receptor precursor (IL-21R) (Novel| interleukin receptor) Length = 538 Score = 29.6 bits (65), Expect = 2.0 Identities = 8/18 (44%), Positives = 15/18 (83%) Frame = -1 Query: 288 PRTWAREWAMLPPPIMAP 235 PR++ R+W ++PPP+ +P Sbjct: 516 PRSYLRQWVVIPPPLSSP 533
>FA53B_HUMAN (Q14153) Protein FAM53B| Length = 422 Score = 29.6 bits (65), Expect = 2.0 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = +1 Query: 55 PLRSTTPALIPSPTVLTTSTNRNRKQPATTNNTRPMIERARP 180 P ++TPA P ++ +R+R QP N+ + ++R RP Sbjct: 244 PSANSTPASTPELARRSSGLSRSRSQPCVLNDKKVGVKRRRP 285
>LSP2_DROME (Q24388) Larval serum protein 2 precursor (LSP-2) (Hexamerin 2)| Length = 701 Score = 29.6 bits (65), Expect = 2.0 Identities = 16/60 (26%), Positives = 23/60 (38%) Frame = +1 Query: 91 PTVLTTSTNRNRKQPATTNNTRPMIERARPRYYIFGMSFHPPSSFRTCRCHYRRRQHRPF 270 P LTT + N P +E + Y FG + H S + +R H+PF Sbjct: 448 PESLTTYFEHFDSDISNAVNVEPAVEGSADPLYTFGRNSHYKGSSYVIKARQQRLNHKPF 507
>POLN_EEVV3 (P36327) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)| [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1); Protease/triphosphatase/NTPase/helicase nsP2 (EC 3.4.22.-) (EC 3.1.3.33) (EC Length = 2485 Score = 29.3 bits (64), Expect = 2.6 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%) Frame = -1 Query: 216 RWMERHAKDVVS-RPCSLNHGSCVVGCCWLF 127 RW + + +D RP L V+GCCW F Sbjct: 393 RWAKEYKEDQEDERPLGLRDRQLVMGCCWAF 423
>POLN_EEVVC (Q8V294) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)| [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1); Protease/triphosphatase/NTPase/helicase nsP2 (EC 3.4.22.-) (EC 3.1.3.33) (EC Length = 2496 Score = 29.3 bits (64), Expect = 2.6 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%) Frame = -1 Query: 216 RWMERHAKDVVS-RPCSLNHGSCVVGCCWLF 127 RW + + +D RP L V+GCCW F Sbjct: 393 RWAKEYKEDQEDERPLGLRDRQLVMGCCWAF 423
>POLN_EEVVT (P27282) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)| [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1); Protease/triphosphatase/NTPase/helicase nsP2 (EC 3.4.22.-) (EC 3.1.3.33) (EC Length = 2492 Score = 29.3 bits (64), Expect = 2.6 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%) Frame = -1 Query: 216 RWMERHAKDVVS-RPCSLNHGSCVVGCCWLF 127 RW + + +D RP L V+GCCW F Sbjct: 393 RWAKEYKEDQEDERPLGLRDRQLVMGCCWAF 423
>POLN_EEVVP (P36328) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)| [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1); Protease/triphosphatase/NTPase/helicase nsP2 (EC 3.4.22.-) (EC 3.1.3.33) (EC Length = 2492 Score = 29.3 bits (64), Expect = 2.6 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%) Frame = -1 Query: 216 RWMERHAKDVVS-RPCSLNHGSCVVGCCWLF 127 RW + + +D RP L V+GCCW F Sbjct: 393 RWAKEYKEDQEDERPLGLRDRQLVMGCCWAF 423
>POLN_EEVVM (Q9WJC7) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)| [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1); Protease/triphosphatase/NTPase/helicase nsP2 (EC 3.4.22.-) (EC 3.1.3.33) (EC Length = 2498 Score = 29.3 bits (64), Expect = 2.6 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%) Frame = -1 Query: 216 RWMERHAKDVVS-RPCSLNHGSCVVGCCWLF 127 RW + + +D RP L V+GCCW F Sbjct: 393 RWAKEYKEDQEDERPLGLRDRQLVMGCCWAF 423
>GUNA_CALSA (P22534) Endoglucanase A precursor (EC 3.2.1.4)| (Endo-1,4-beta-glucanase A) (Cellulase A) Length = 1742 Score = 28.9 bits (63), Expect = 3.4 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 8/47 (17%) Frame = +1 Query: 52 TPLRSTTPALIPSPTVLTTSTN--------RNRKQPATTNNTRPMIE 168 TP ++TP + P+PT ++T N++ +TTN RP ++ Sbjct: 682 TPTPTSTPTVTPTPTPVSTPATSGQIKVLYANKETNSTTNTIRPWLK 728
>EDG3_MOUSE (Q9Z0U9) Sphingosine 1-phosphate receptor Edg-3 (S1P receptor| Edg-3) (Endothelial differentiation G-protein coupled receptor 3) (Sphingosine 1-phosphate receptor 3) (S1P3) (Lysophospholipid receptor B3) Length = 378 Score = 28.9 bits (63), Expect = 3.4 Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 3/66 (4%) Frame = -1 Query: 303 TLHCFPRTWAREWAMLPPPIMAPTCSERRRWMERHAKDVVSRPCSLNHGSCV---VGCCW 133 T P W + + A TCS +ERH + RP N V +G CW Sbjct: 104 TFSLSPTVWFLREGSMFVALGASTCSLLAIAIERHLTMIKMRPYDANKKHRVFLLIGMCW 163 Query: 132 LFSISV 115 L + S+ Sbjct: 164 LIAFSL 169
>FKS26_MOUSE (Q8R3L2) Protein FKSG26| Length = 676 Score = 28.9 bits (63), Expect = 3.4 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 2/41 (4%) Frame = +1 Query: 154 RPMIERARPRYYIFGMSFHPPSSFR--TCRCHYRRRQHRPF 270 R +IERA Y +FHP S TCR YRR ++R F Sbjct: 306 RDLIERA---LYSMECAFHPLFSLTSGTCRLDYRRPENRSF 343
>POLN_EEEVF (Q4QXJ8) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)| [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1); Protease/triphosphatase/NTPase/helicase nsP2 (EC 3.4.22.-) (EC 3.1.3.33) (EC Length = 2493 Score = 28.5 bits (62), Expect = 4.4 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%) Frame = -1 Query: 249 PIMAPTCSERRRWMERHAKDVVS-RPCSLNHGSCVVGCCWLF 127 P++A S RW H D+ + + S V+GCCW F Sbjct: 383 PVVAQAFS---RWAREHRADLEDEKGLGVRERSLVMGCCWAF 421
>PE55_LUCCU (Q95UE8) Peritrophin-55 precursor| Length = 220 Score = 28.1 bits (61), Expect = 5.8 Identities = 13/38 (34%), Positives = 19/38 (50%) Frame = +1 Query: 46 KITPLRSTTPALIPSPTVLTTSTNRNRKQPATTNNTRP 159 K TP+ +T P P P+ + T N+ P T T+P Sbjct: 124 KTTPIVTTAPPSTPVPSTIVT----NKPDPTTPKTTKP 157
>RFNG_HUMAN (Q9Y644) Beta-1,3-N-acetylglucosaminyltransferase radical fringe| (EC 2.4.1.222) (O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase) Length = 331 Score = 28.1 bits (61), Expect = 5.8 Identities = 15/47 (31%), Positives = 19/47 (40%) Frame = +1 Query: 55 PLRSTTPALIPSPTVLTTSTNRNRKQPATTNNTRPMIERARPRYYIF 195 P R P+L P + T R P R I RAR + +IF Sbjct: 47 PSRPAAPSLRPDDVFIAVKTTRKNHGPRLRLLLRTWISRARQQTFIF 93
>MAP4_HUMAN (P27816) Microtubule-associated protein 4 (MAP 4)| Length = 1152 Score = 28.1 bits (61), Expect = 5.8 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%) Frame = +1 Query: 22 AYLI*SRYKITPLRS---TTPALIPSPTVLTTSTNRNRKQPATTNNTRPMIERARPR 183 A ++ SR K TP+ S TTP + PT S+ R TN + P ++ R + Sbjct: 882 AGVVPSRVKATPMPSRPSTTPFIDKKPTSAKPSSTTPRLSRLATNTSAPDLKNVRSK 938
>LAP4_DROME (Q7KRY7) Protein lap4 (Protein scribble) (Protein smell-impaired)| Length = 1851 Score = 28.1 bits (61), Expect = 5.8 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = +1 Query: 43 YKITPLRSTTPALIPSPTVLTTSTNRNRKQPATTNN 150 YK L +TTP P PTV + +N N P++ N Sbjct: 1062 YKYNTLATTTPT--PKPTVPASISNNNNTLPSSKTN 1095
>ZN646_HUMAN (O15015) Zinc finger protein 646| Length = 1829 Score = 28.1 bits (61), Expect = 5.8 Identities = 17/72 (23%), Positives = 34/72 (47%) Frame = +1 Query: 73 PALIPSPTVLTTSTNRNRKQPATTNNTRPMIERARPRYYIFGMSFHPPSSFRTCRCHYRR 252 P++ P+P +L +T++ + P TT + RP + G ++ S R +R Sbjct: 436 PSVPPAPLLLAETTHKEEEDPTTTLDHRPY------KCSECGRAYRHRGSLVNHRHSHRT 489 Query: 253 RQHRPFPCPRPW 288 +++ CPR + Sbjct: 490 GEYQCSLCPRKY 501
>FA53B_MOUSE (Q8BGR5) Protein FAM53B| Length = 422 Score = 28.1 bits (61), Expect = 5.8 Identities = 13/42 (30%), Positives = 22/42 (52%) Frame = +1 Query: 55 PLRSTTPALIPSPTVLTTSTNRNRKQPATTNNTRPMIERARP 180 P ++TPA P ++ R+R QP N+ + ++R RP Sbjct: 245 PSANSTPASTPELARRSSGLARSRSQPCVLNDKKIGVKRRRP 286
>GLMS_SYNEL (Q8DJI6) Glucosamine--fructose-6-phosphate aminotransferase| [isomerizing] (EC 2.6.1.16) (Hexosephosphate aminotransferase) (D-fructose-6-phosphate amidotransferase) (GFAT) (L-glutamine-D-fructose-6-phosphate amidotransferase) (Glucosamine-6-ph Length = 625 Score = 28.1 bits (61), Expect = 5.8 Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 19/82 (23%) Frame = +1 Query: 64 STTPALIP----------------SPT---VLTTSTNRNRKQPATTNNTRPMIERARPRY 186 S TPA+IP +PT V +R RK P T N M+E+ ++ Sbjct: 195 SDTPAIIPYTRAVLPLENGELARLTPTGVEVYDFEGHRLRKTPRTLNWNPVMVEKQGFKH 254 Query: 187 YIFGMSFHPPSSFRTCRCHYRR 252 Y+ + P R C +Y R Sbjct: 255 YMLKEIYEQPGVVRACLENYLR 276
>GCSP_CHRVO (Q7NSJ5) Glycine dehydrogenase [decarboxylating] (EC 1.4.4.2)| (Glycine decarboxylase) (Glycine cleavage system P-protein) Length = 950 Score = 27.7 bits (60), Expect = 7.5 Identities = 17/55 (30%), Positives = 25/55 (45%) Frame = -1 Query: 300 LHCFPRTWAREWAMLPPPIMAPTCSERRRWMERHAKDVVSRPCSLNHGSCVVGCC 136 L P RE A+L P+ SE M R+ K + +R ++NH +G C Sbjct: 451 LDAIPAALKRESAILTHPVFNTHHSEHE--MLRYMKKLENRDLAMNHSMISLGSC 503
>EDG3_HUMAN (Q99500) Sphingosine 1-phosphate receptor Edg-3 (S1P receptor| Edg-3) (Endothelial differentiation G-protein coupled receptor 3) (Sphingosine 1-phosphate receptor 3) (S1P3) Length = 378 Score = 27.7 bits (60), Expect = 7.5 Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 3/66 (4%) Frame = -1 Query: 303 TLHCFPRTWAREWAMLPPPIMAPTCSERRRWMERHAKDVVSRPCSLNHGSCV---VGCCW 133 T P W + + A TCS +ERH + RP N V +G CW Sbjct: 103 TFSLSPTVWFLREGSMFVALGASTCSLLAIAIERHLTMIKMRPYDANKRHRVFLLIGMCW 162 Query: 132 LFSISV 115 L + ++ Sbjct: 163 LIAFTL 168
>MTR1L_HUMAN (Q13585) Melatonin-related receptor (G protein-coupled receptor 50)| (H9) Length = 613 Score = 27.7 bits (60), Expect = 7.5 Identities = 13/20 (65%), Positives = 15/20 (75%) Frame = +1 Query: 58 LRSTTPALIPSPTVLTTSTN 117 L S T A +P PTV+TTSTN Sbjct: 575 LESDTIADLPDPTVVTTSTN 594
>ESC1_SCHPO (Q04635) Protein esc1| Length = 413 Score = 27.7 bits (60), Expect = 7.5 Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 1/90 (1%) Frame = +1 Query: 55 PLRSTTPALIPSPTVLTTSTNRNRKQPATTNNTRPMIERARPRYYIFGMSFHPPSSFRTC 234 PLR + +P+ +ST + +Q T+N+ P+ + P + G + PP + Sbjct: 18 PLRQMSQPTTSAPSNSASSTPYSPQQVPLTHNSYPL---STPSSFQHGQTRLPPINCLA- 73 Query: 235 RCHYRRRQHRPFPCPRPW-KTVERPASEEP 321 PF P+PW PAS P Sbjct: 74 ---------EPFNRPQPWHSNSAAPASSSP 94
>NFASC_CHICK (O42414) Neurofascin precursor| Length = 1369 Score = 27.7 bits (60), Expect = 7.5 Identities = 14/41 (34%), Positives = 19/41 (46%) Frame = +1 Query: 52 TPLRSTTPALIPSPTVLTTSTNRNRKQPATTNNTRPMIERA 174 TP T P IP+ + TT+T +T +T ERA Sbjct: 1081 TPTTETPPTEIPTTAIPTTTTTTTTTAASTVASTTTTAERA 1121
>KI18A_HUMAN (Q8NI77) Kinesin family member 18A| Length = 898 Score = 27.7 bits (60), Expect = 7.5 Identities = 10/27 (37%), Positives = 19/27 (70%) Frame = +1 Query: 73 PALIPSPTVLTTSTNRNRKQPATTNNT 153 P+++PS +TT+ R RK ++T+N+ Sbjct: 814 PSMVPSYMAMTTAAKRKRKLTSSTSNS 840
>RS19A_DROME (P39018) 40S ribosomal protein S19a| Length = 155 Score = 27.7 bits (60), Expect = 7.5 Identities = 13/41 (31%), Positives = 22/41 (53%) Frame = +2 Query: 32 YDPDTRLLHCAQQLQRLFHLLPS*LRVRTEIENSQQQPTTH 154 YDPD + CA L+ L+H P+ + T+I +++ H Sbjct: 47 YDPDWFYVRCASILRHLYHRSPAGVGSITKIYGGRKRNGVH 87
>R1AB_CVMA5 (P16342) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7176 Score = 27.3 bits (59), Expect = 9.9 Identities = 8/13 (61%), Positives = 10/13 (76%) Frame = -3 Query: 151 CCWLLLAVFYFCS 113 CCW+L + F FCS Sbjct: 3646 CCWILASTFLFCS 3658
>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)| Length = 5179 Score = 27.3 bits (59), Expect = 9.9 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = +1 Query: 52 TPLRSTTPALIPSPTVLTTSTNRNRKQPATTNNT 153 TP +TTP+ P PT +TT + P TT T Sbjct: 1714 TPSSTTTPS--PPPTTMTTPSPTTTPSPPTTTMT 1745
>TRX_DROME (P20659) Protein trithorax| Length = 3726 Score = 27.3 bits (59), Expect = 9.9 Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 5/80 (6%) Frame = +1 Query: 49 ITPLRSTTPALIPSPTVLTTSTNR-----NRKQPATTNNTRPMIERARPRYYIFGMSFHP 213 + P++ P+ S T T TNR R++PA +N P++ P + H Sbjct: 3049 VNPMQQQAPSTTSSST--TRPTNRVLPMQQRQEPAPLSNECPVVSSPTPPKPVEQPIIHQ 3106 Query: 214 PSSFRTCRCHYRRRQHRPFP 273 +S +C Y ++ P P Sbjct: 3107 MTSASVSKC-YAQKSTLPSP 3125
>DAN4_YEAST (P47179) Cell wall protein DAN4 precursor| Length = 1161 Score = 27.3 bits (59), Expect = 9.9 Identities = 14/34 (41%), Positives = 16/34 (47%) Frame = +1 Query: 52 TPLRSTTPALIPSPTVLTTSTNRNRKQPATTNNT 153 T STTP +PT TTST +TT T Sbjct: 218 TSTTSTTPTTSTTPTTSTTSTTSQTSTKSTTPTT 251
>TENA_HUMAN (P24821) Tenascin precursor (TN) (Hexabrachion) (Cytotactin)| (Neuronectin) (GMEM) (JI) (Miotendinous antigen) (Glioma-associated-extracellular matrix antigen) (GP 150-225) (Tenascin-C) (TN-C) Length = 2201 Score = 27.3 bits (59), Expect = 9.9 Identities = 9/21 (42%), Positives = 14/21 (66%) Frame = -1 Query: 198 AKDVVSRPCSLNHGSCVVGCC 136 ++++ PCS HG+CV G C Sbjct: 248 SREICPVPCSEEHGTCVDGLC 268
>R1AB_CVMJH (P19751) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7180 Score = 27.3 bits (59), Expect = 9.9 Identities = 8/13 (61%), Positives = 10/13 (76%) Frame = -3 Query: 151 CCWLLLAVFYFCS 113 CCW+L + F FCS Sbjct: 3650 CCWILASTFLFCS 3662
>DYI2_ANTCR (Q16959) Dynein intermediate chain 2, ciliary| Length = 702 Score = 27.3 bits (59), Expect = 9.9 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = -3 Query: 304 DAPLFSKDVGKGMGDAAAADNGTDMF*TKKVDGK 203 + P+F+ D+G +GD A A + +F DGK Sbjct: 573 NGPMFTFDLGSAVGDVAWAPYSSTVFAAVTADGK 606
>VGLC_HHV1K (P28986) Glycoprotein C precursor| Length = 511 Score = 27.3 bits (59), Expect = 9.9 Identities = 13/38 (34%), Positives = 15/38 (39%) Frame = +1 Query: 46 KITPLRSTTPALIPSPTVLTTSTNRNRKQPATTNNTRP 159 K TP +P P PT S + P NNT P Sbjct: 75 KTTPTEPASPPTTPKPTSTPKSPPTSTPDPKPKNNTTP 112
>VGLC_HHV11 (P10228) Glycoprotein C precursor| Length = 511 Score = 27.3 bits (59), Expect = 9.9 Identities = 13/38 (34%), Positives = 15/38 (39%) Frame = +1 Query: 46 KITPLRSTTPALIPSPTVLTTSTNRNRKQPATTNNTRP 159 K TP +P P PT S + P NNT P Sbjct: 75 KTTPTEPASPPTTPKPTSTPKSPPTSTPDPKPKNNTTP 112 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,016,261 Number of Sequences: 219361 Number of extensions: 905024 Number of successful extensions: 3169 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 2816 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3139 length of database: 80,573,946 effective HSP length: 82 effective length of database: 62,586,344 effective search space used: 1502072256 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)