ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl32d09 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_450107.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3007 Score = 87.7 bits (44), Expect = 3e-14 Identities = 92/108 (85%) Strand = Plus / Minus Query: 318 taaatctcacgtttctgcaccttctcaacttgctgatagcttcttgggccttcccctgca 377 |||||||||| |||| || | |||||||||| ||| |||||||| |||||||| || | Sbjct: 2665 taaatctcacagttctacatcgtctcaacttggcgattgcttcttgtgccttcccttgaa 2606 Query: 378 gaaggtccacatagatggatgctagcaatgccctagggttgttgggca 425 ||||||||||||| | |||||||||| |||||| ||||||||||||| Sbjct: 2605 gaaggtccacataaactgatgctagcactgccctggggttgttgggca 2558 Score = 60.0 bits (30), Expect = 6e-06 Identities = 148/183 (80%), Gaps = 17/183 (9%) Strand = Plus / Minus Query: 103 attacacccctgaatctgggaaagct---aaagaggtgacaggggg--agatctaaagtt 157 |||||||||||||||| ||||||||| |||| || || |||||| ||||||| |||| Sbjct: 2884 attacacccctgaatcagggaaagcttttaaagtggggaaagggggggagatctacagtt 2825 Query: 158 ---ctttttcttatgtatggtacacaggaaaacgttacgatctttcaggatgatcatcca 214 ||| ||||||||||||||||||| | ||| |||||||||| ||||||||| Sbjct: 2824 tttcttcttcttatgtatggtacacacaagaacattacgatcttc------gatcatcca 2771 Query: 215 catgggg-tcggggtccaactcaagaaatggcaattatcaactatagataaatcatcaaa 273 | ||||| || |||||||| | |||||||||||||||||||| || ||||||||||| Sbjct: 2770 cctgggggtcagggtccaaaagatgaaatggcaattatcaactacag--aaatcatcaaa 2713 Query: 274 agg 276 ||| Sbjct: 2712 agg 2710
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 87.7 bits (44), Expect = 3e-14 Identities = 92/108 (85%) Strand = Plus / Minus Query: 318 taaatctcacgtttctgcaccttctcaacttgctgatagcttcttgggccttcccctgca 377 |||||||||| |||| || | |||||||||| ||| |||||||| |||||||| || | Sbjct: 1732467 taaatctcacagttctacatcgtctcaacttggcgattgcttcttgtgccttcccttgaa 1732408 Query: 378 gaaggtccacatagatggatgctagcaatgccctagggttgttgggca 425 ||||||||||||| | |||||||||| |||||| ||||||||||||| Sbjct: 1732407 gaaggtccacataaactgatgctagcactgccctggggttgttgggca 1732360 Score = 60.0 bits (30), Expect = 6e-06 Identities = 148/183 (80%), Gaps = 17/183 (9%) Strand = Plus / Minus Query: 103 attacacccctgaatctgggaaagct---aaagaggtgacaggggg--agatctaaagtt 157 |||||||||||||||| ||||||||| |||| || || |||||| ||||||| |||| Sbjct: 1732686 attacacccctgaatcagggaaagcttttaaagtggggaaagggggggagatctacagtt 1732627 Query: 158 ---ctttttcttatgtatggtacacaggaaaacgttacgatctttcaggatgatcatcca 214 ||| ||||||||||||||||||| | ||| |||||||||| ||||||||| Sbjct: 1732626 tttcttcttcttatgtatggtacacacaagaacattacgatcttc------gatcatcca 1732573 Query: 215 catgggg-tcggggtccaactcaagaaatggcaattatcaactatagataaatcatcaaa 273 | ||||| || |||||||| | |||||||||||||||||||| || ||||||||||| Sbjct: 1732572 cctgggggtcagggtccaaaagatgaaatggcaattatcaactacag--aaatcatcaaa 1732515 Query: 274 agg 276 ||| Sbjct: 1732514 agg 1732512
>dbj|AP006062.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0415D04 Length = 176627 Score = 87.7 bits (44), Expect = 3e-14 Identities = 92/108 (85%) Strand = Plus / Minus Query: 318 taaatctcacgtttctgcaccttctcaacttgctgatagcttcttgggccttcccctgca 377 |||||||||| |||| || | |||||||||| ||| |||||||| |||||||| || | Sbjct: 119039 taaatctcacagttctacatcgtctcaacttggcgattgcttcttgtgccttcccttgaa 118980 Query: 378 gaaggtccacatagatggatgctagcaatgccctagggttgttgggca 425 ||||||||||||| | |||||||||| |||||| ||||||||||||| Sbjct: 118979 gaaggtccacataaactgatgctagcactgccctggggttgttgggca 118932 Score = 60.0 bits (30), Expect = 6e-06 Identities = 148/183 (80%), Gaps = 17/183 (9%) Strand = Plus / Minus Query: 103 attacacccctgaatctgggaaagct---aaagaggtgacaggggg--agatctaaagtt 157 |||||||||||||||| ||||||||| |||| || || |||||| ||||||| |||| Sbjct: 119258 attacacccctgaatcagggaaagcttttaaagtggggaaagggggggagatctacagtt 119199 Query: 158 ---ctttttcttatgtatggtacacaggaaaacgttacgatctttcaggatgatcatcca 214 ||| ||||||||||||||||||| | ||| |||||||||| ||||||||| Sbjct: 119198 tttcttcttcttatgtatggtacacacaagaacattacgatcttc------gatcatcca 119145 Query: 215 catgggg-tcggggtccaactcaagaaatggcaattatcaactatagataaatcatcaaa 273 | ||||| || |||||||| | |||||||||||||||||||| || ||||||||||| Sbjct: 119144 cctgggggtcagggtccaaaagatgaaatggcaattatcaactacag--aaatcatcaaa 119087 Query: 274 agg 276 ||| Sbjct: 119086 agg 119084
>dbj|AK103665.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033135J15, full insert sequence Length = 3007 Score = 87.7 bits (44), Expect = 3e-14 Identities = 92/108 (85%) Strand = Plus / Minus Query: 318 taaatctcacgtttctgcaccttctcaacttgctgatagcttcttgggccttcccctgca 377 |||||||||| |||| || | |||||||||| ||| |||||||| |||||||| || | Sbjct: 2665 taaatctcacagttctacatcgtctcaacttggcgattgcttcttgtgccttcccttgaa 2606 Query: 378 gaaggtccacatagatggatgctagcaatgccctagggttgttgggca 425 ||||||||||||| | |||||||||| |||||| ||||||||||||| Sbjct: 2605 gaaggtccacataaactgatgctagcactgccctggggttgttgggca 2558 Score = 60.0 bits (30), Expect = 6e-06 Identities = 148/183 (80%), Gaps = 17/183 (9%) Strand = Plus / Minus Query: 103 attacacccctgaatctgggaaagct---aaagaggtgacaggggg--agatctaaagtt 157 |||||||||||||||| ||||||||| |||| || || |||||| ||||||| |||| Sbjct: 2884 attacacccctgaatcagggaaagcttttaaagtggggaaagggggggagatctacagtt 2825 Query: 158 ---ctttttcttatgtatggtacacaggaaaacgttacgatctttcaggatgatcatcca 214 ||| ||||||||||||||||||| | ||| |||||||||| ||||||||| Sbjct: 2824 tttcttcttcttatgtatggtacacacaagaacattacgatcttc------gatcatcca 2771 Query: 215 catgggg-tcggggtccaactcaagaaatggcaattatcaactatagataaatcatcaaa 273 | ||||| || |||||||| | |||||||||||||||||||| || ||||||||||| Sbjct: 2770 cctgggggtcagggtccaaaagatgaaatggcaattatcaactacag--aaatcatcaaa 2713 Query: 274 agg 276 ||| Sbjct: 2712 agg 2710
>gb|AC138114.3| Mus musculus BAC clone RP24-247F6 from chromosome 6, complete sequence Length = 170688 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 35 aataaaggaatatcagaaggtatcat 60 |||||| ||||||||||||||||||| Sbjct: 147808 aataaaagaatatcagaaggtatcat 147833
>gb|AC132440.3| Mus musculus BAC clone RP23-239I24 from chromosome 8, complete sequence Length = 183218 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 258 tagataaatcatcaaaaggagg 279 |||||||||||||||||||||| Sbjct: 72606 tagataaatcatcaaaaggagg 72627
>gb|AC123732.9| Mus musculus chromosome 1, clone RP23-459I8, complete sequence Length = 158620 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 33 tgaataaaggaatatcagaag 53 ||||||||||||||||||||| Sbjct: 12766 tgaataaaggaatatcagaag 12746
>gb|AC102119.10| Mus musculus chromosome 19, clone RP23-173J6, complete sequence Length = 218170 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 285 ctcatctgctggctgctgcta 305 ||||||||||||||||||||| Sbjct: 217427 ctcatctgctggctgctgcta 217407
>gb|AC157797.5| Mus musculus chromosome 1, clone RP24-149G24, complete sequence Length = 157629 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 35 aataaaggaatatcagaaggtatcatcat 63 |||||||| || ||||||||||||||||| Sbjct: 114173 aataaagggatttcagaaggtatcatcat 114201
>gb|AC091331.14| Mus musculus chromosome 1, clone RP23-293F4, complete sequence Length = 236163 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 33 tgaataaaggaatatcagaag 53 ||||||||||||||||||||| Sbjct: 227599 tgaataaaggaatatcagaag 227579
>gb|AC165239.3| Mus musculus chromosome 19, clone RP24-73C2, complete sequence Length = 208461 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 285 ctcatctgctggctgctgcta 305 ||||||||||||||||||||| Sbjct: 67046 ctcatctgctggctgctgcta 67026
>emb|AL136097.10| Human DNA sequence from clone RP11-62C3 on chromosome 9q22.1-22.33 Contains a novel pseudogene, a novel gene, the IARS gene for isoleucine-tRNA synthetase, the gene for a novel protein (FLJ20736), the 5' end of a novel gene, a UPF0183 protein pseudogene, the NOL8 gene for nucleolar protein 8 and three CpG islands, complete sequence Length = 193488 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 54 gtatcatcatttcagtccaaa 74 ||||||||||||||||||||| Sbjct: 181591 gtatcatcatttcagtccaaa 181571
>emb|AL034376.10|HS529N6 Human DNA sequence from clone RP4-529N6 on chromosome 6p24.1-25.3 Contains a novel gene, complete sequence Length = 131819 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 151 taaagttctttttcttatgta 171 ||||||||||||||||||||| Sbjct: 95137 taaagttctttttcttatgta 95157
>gb|AC015801.25|AC015801 Homo sapiens chromosome 17, clone RP11-854A13, complete sequence Length = 185351 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 127 ctaaagaggtgacagggggagatct 151 ||||||||||||||||| ||||||| Sbjct: 92548 ctaaagaggtgacagggagagatct 92524
>dbj|AK174886.1| Ciona intestinalis cDNA, clone:citb030d06, full insert sequence Length = 576 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 156 ttctttttcttatgtatggta 176 ||||||||||||||||||||| Sbjct: 397 ttctttttcttatgtatggta 417
>gb|AC102777.12| Mus musculus chromosome 1, clone RP23-5K7, complete sequence Length = 195874 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 35 aataaaggaatatcagaaggtatcatcat 63 |||||||| || ||||||||||||||||| Sbjct: 116164 aataaagggatttcagaaggtatcatcat 116136
>gb|AF092354.1|AF092354 Terranatos dolichopterus 12s ribosomal RNA gene, partial sequence; tRNA-Xxx gene, complete sequence; and 16s ribosomal RNA gene, partial sequence Length = 543 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 261 ataaatcatcaaaaggaggca 281 ||||||||||||||||||||| Sbjct: 392 ataaatcatcaaaaggaggca 412
>gb|AC170255.8| Mus musculus chromosome 1, clone RP23-359K18, complete sequence Length = 226189 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 35 aataaaggaatatcagaaggtatcatcat 63 |||||||| || ||||||||||||||||| Sbjct: 169996 aataaagggatttcagaaggtatcatcat 170024
>gb|AC153899.3| Mus musculus BAC RP23-128C4 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 164582 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 ttttgcacattttctttcct 33 |||||||||||||||||||| Sbjct: 140863 ttttgcacattttctttcct 140882
>gb|CP000111.1| Prochlorococcus marinus str. MIT 9312, complete genome Length = 1709204 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 248 ttatcaactatagataaatcatca 271 ||||||||||||||||| |||||| Sbjct: 194640 ttatcaactatagataattcatca 194663
>gb|AC101689.12| Mus musculus chromosome 1, clone RP23-217C21, complete sequence Length = 189241 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 atgccttttgcacattttct 28 |||||||||||||||||||| Sbjct: 175955 atgccttttgcacattttct 175936
>gb|AC166488.5| Mus musculus chromosome 1, clone RP23-245C4, complete sequence Length = 194413 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 atgccttttgcacattttct 28 |||||||||||||||||||| Sbjct: 129583 atgccttttgcacattttct 129602
>gb|AC116895.12| Mus musculus chromosome 8, clone RP24-531C8, complete sequence Length = 170041 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 gttctttttcttatgtatgg 174 |||||||||||||||||||| Sbjct: 148277 gttctttttcttatgtatgg 148258
>gb|AC165164.4| Mus musculus BAC clone RP23-117C21 from chromosome 10, complete sequence Length = 189986 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 ctcatctgctggctgctgct 304 |||||||||||||||||||| Sbjct: 150492 ctcatctgctggctgctgct 150511
>ref|XM_588329.2| PREDICTED: Bos taurus similar to steroid receptor-interacting SNF2 domain protein (LOC511069), mRNA Length = 4412 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 306 cactactggtcttaaatctc 325 |||||||||||||||||||| Sbjct: 832 cactactggtcttaaatctc 813
>gb|AC109210.26| Mus musculus chromosome 7, clone RP23-9C7, complete sequence Length = 236592 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 agaaggtatcatcatttcag 68 |||||||||||||||||||| Sbjct: 53391 agaaggtatcatcatttcag 53372
>emb|AL136305.14| Human DNA sequence from clone RP1-259A10 on chromosome 6p22.1-23 Contains the gene for an ssDNA binding protein and a CpG island, complete sequence Length = 150520 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 13 cttttgcacattttctttcctgaa 36 |||||||||||||| ||||||||| Sbjct: 47922 cttttgcacattttttttcctgaa 47899
>emb|AL135790.7| Human DNA sequence from clone RP11-87N24 on chromosome 9p22.1-23 Contains a ribosomal protein S12 (RPS12) pseudogene, 2 novel genes, the 5' end of a variant of the PTPRD gene for protein tyrosine phosphatase, receptor type, D (HPTP, PTPD, HPTPD). and a CpG island, complete sequence Length = 176273 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 51 aaggtatcatcatttcagtccaaa 74 |||||||||||||| ||||||||| Sbjct: 75388 aaggtatcatcattccagtccaaa 75411
>emb|X55026.1|MTPACG Podospora anserina complete mitochondrial genome Length = 100314 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 ctgaataaaggaatatcaga 51 |||||||||||||||||||| Sbjct: 97789 ctgaataaaggaatatcaga 97808
>emb|X13164.1|MIPAND1B Podospora anserina mitochondrial ND1 gene exons 3 and 4 Length = 5803 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 ctgaataaaggaatatcaga 51 |||||||||||||||||||| Sbjct: 3121 ctgaataaaggaatatcaga 3140
>gb|AC160633.3| Mus musculus chromosome 8, clone RP23-407P24, complete sequence Length = 203628 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 155 gttctttttcttatgtatgg 174 |||||||||||||||||||| Sbjct: 18810 gttctttttcttatgtatgg 18829
>gb|AC159652.6| Mus musculus 10 BAC RP24-123H21 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 202827 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 252 caactatagataaatcatca 271 |||||||||||||||||||| Sbjct: 126371 caactatagataaatcatca 126390
>ref|NM_001013527.1| Danio rerio zgc:103605 (zgc:103605), mRNA Length = 2001 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 ccttttgcacattttctttc 31 |||||||||||||||||||| Sbjct: 1596 ccttttgcacattttctttc 1615
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 aattacacccctgaatctgg 121 |||||||||||||||||||| Sbjct: 20897954 aattacacccctgaatctgg 20897973
>gb|AC063932.14| Homo sapiens 3 BAC RP11-298A18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 186897 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 329 tttctgcaccttctcaactt 348 |||||||||||||||||||| Sbjct: 4445 tttctgcaccttctcaactt 4426
>gb|BC090903.1| Danio rerio zgc:103605, mRNA (cDNA clone MGC:103605 IMAGE:7250553), complete cds Length = 2001 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 ccttttgcacattttctttc 31 |||||||||||||||||||| Sbjct: 1596 ccttttgcacattttctttc 1615
>emb|AL928757.3|CNS08CBU Oryza sativa chromosome 12, . BAC OSJNBb0046O08 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 101075 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 aattacacccctgaatctgg 121 |||||||||||||||||||| Sbjct: 99681 aattacacccctgaatctgg 99700
>dbj|AK105692.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-C06, full insert sequence Length = 2509 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 aattacacccctgaatctgg 121 |||||||||||||||||||| Sbjct: 1719 aattacacccctgaatctgg 1738
>dbj|AK069805.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030L10, full insert sequence Length = 1829 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 aattacacccctgaatctgg 121 |||||||||||||||||||| Sbjct: 998 aattacacccctgaatctgg 1017
>gb|AC122197.4| Mus musculus BAC clone RP23-55A6 from 10, complete sequence Length = 232763 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 ctcatctgctggctgctgct 304 |||||||||||||||||||| Sbjct: 74566 ctcatctgctggctgctgct 74585
>emb|BX957287.9| Zebrafish DNA sequence from clone DKEYP-59A8 in linkage group 20, complete sequence Length = 154419 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 tgaataaaggaatatcagaa 52 |||||||||||||||||||| Sbjct: 132925 tgaataaaggaatatcagaa 132906
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 aattacacccctgaatctgg 121 |||||||||||||||||||| Sbjct: 20824168 aattacacccctgaatctgg 20824187
>emb|AL731880.3|CNS08C8J Oryza sativa chromosome 12, . BAC OSJNBa0035E02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 107819 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 aattacacccctgaatctgg 121 |||||||||||||||||||| Sbjct: 61041 aattacacccctgaatctgg 61022
>emb|Z50031.1|MTPCATND1 P.comata mitochondrial DNA for ND1 gene (strain ATCC36713) Length = 2683 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 ctgaataaaggaatatcaga 51 |||||||||||||||||||| Sbjct: 710 ctgaataaaggaatatcaga 729
>emb|AL845316.3| Mouse DNA sequence from clone RP23-348I7 on chromosome X, complete sequence Length = 197688 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 agttctttttcttatgtatg 173 |||||||||||||||||||| Sbjct: 53722 agttctttttcttatgtatg 53703
>dbj|AB034225.1| Flavobacterium aquatile gyrB gene for DNA gyrase B subunit, partial cds Length = 1422 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 tctttcctgaataaaggaat 45 |||||||||||||||||||| Sbjct: 271 tctttcctgaataaaggaat 290
>emb|AL591366.15| Mouse DNA sequence from clone RP23-80N1 on chromosome 11, complete sequence Length = 117612 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 68 gtccaaagaggggctctaaaactc 91 ||||||||||||| |||||||||| Sbjct: 77732 gtccaaagagggggtctaaaactc 77755 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,818,668 Number of Sequences: 3902068 Number of extensions: 4818668 Number of successful extensions: 88127 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87930 Number of HSP's gapped (non-prelim): 193 length of query: 428 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 406 effective length of database: 17,147,199,772 effective search space: 6961763107432 effective search space used: 6961763107432 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
