ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl32d07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_139077.1| Danio rerio NIMA (never in mitosis gene a)-rela... 42 1.5
2gb|AY558077.1| Saccharomyces cerevisiae clone FLH113455.01X YBL0... 42 1.5
3emb|X79489.1|SCDNCH2 S.cerevisiae genomic DNA, chromosome II fro... 42 1.5
4emb|Z35858.1|SCYBL097W S.cerevisiae chromosome II reading frame ... 42 1.5
5emb|CR392353.6| Zebrafish DNA sequence from clone CH211-9D19 in ... 42 1.5
6gb|AF407580.1| Danio rerio NIMA-related kinase 8 (nek8) mRNA, co... 42 1.5
7gb|AC104279.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.1
8gb|AC124992.14| Mus musculus chromosome 10, clone RP23-149L10, c... 40 6.1
9gb|AC125087.2| Mus musculus BAC clone RP24-143E18 from chromosom... 40 6.1
10gb|AC124685.5| Mus musculus BAC clone RP24-385O22 from chromosom... 40 6.1
11emb|AL138830.20| Human DNA sequence from clone RP3-399L15 on chr... 40 6.1
12gb|AC157572.4| Mus musculus BAC clone RP23-79O10 from chromosome... 40 6.1
13gb|AC019193.7| Homo sapiens BAC clone RP11-335L23 from 4, comple... 40 6.1
14dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
15emb|AL928689.7| Mouse DNA sequence from clone RP23-35P3 on chrom... 40 6.1

>ref|NM_139077.1| Danio rerio NIMA (never in mitosis gene a)-related kinase 8 (nek8),
            mRNA
          Length = 2816

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 264  ttctgtatttgcagtattaca 284
            |||||||||||||||||||||
Sbjct: 2606 ttctgtatttgcagtattaca 2626



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>gb|AY558077.1| Saccharomyces cerevisiae clone FLH113455.01X YBL097W gene, complete
            cds
          Length = 2188

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 312  tttttgtcagtagtatctcct 332
            |||||||||||||||||||||
Sbjct: 1241 tttttgtcagtagtatctcct 1221



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>emb|X79489.1|SCDNCH2 S.cerevisiae genomic DNA, chromosome II from Y element to ILS1 gene
          Length = 78600

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 312   tttttgtcagtagtatctcct 332
             |||||||||||||||||||||
Sbjct: 36184 tttttgtcagtagtatctcct 36164



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>emb|Z35858.1|SCYBL097W S.cerevisiae chromosome II reading frame ORF YBL097w
          Length = 2654

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 312  tttttgtcagtagtatctcct 332
            |||||||||||||||||||||
Sbjct: 1627 tttttgtcagtagtatctcct 1607



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>emb|CR392353.6| Zebrafish DNA sequence from clone CH211-9D19 in linkage group 11,
             complete sequence
          Length = 183599

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 264   ttctgtatttgcagtattaca 284
             |||||||||||||||||||||
Sbjct: 34488 ttctgtatttgcagtattaca 34508



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>gb|AF407580.1| Danio rerio NIMA-related kinase 8 (nek8) mRNA, complete cds
          Length = 2816

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 264  ttctgtatttgcagtattaca 284
            |||||||||||||||||||||
Sbjct: 2606 ttctgtatttgcagtattaca 2626



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>gb|AC104279.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1393_A07,
             complete sequence
          Length = 159932

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    tgtataaaccccaaaaaata 75
             ||||||||||||||||||||
Sbjct: 74408 tgtataaaccccaaaaaata 74389



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>gb|AC124992.14| Mus musculus chromosome 10, clone RP23-149L10, complete sequence
          Length = 194736

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 299    attggcactaggatttttgt 318
              ||||||||||||||||||||
Sbjct: 101535 attggcactaggatttttgt 101516



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>gb|AC125087.2| Mus musculus BAC clone RP24-143E18 from chromosome 14, complete sequence
          Length = 180794

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 351    agttcctgggtagtggtaag 370
              ||||||||||||||||||||
Sbjct: 149900 agttcctgggtagtggtaag 149919



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>gb|AC124685.5| Mus musculus BAC clone RP24-385O22 from chromosome 2, complete sequence
          Length = 174583

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 293   catggaattggcactaggat 312
             ||||||||||||||||||||
Sbjct: 62981 catggaattggcactaggat 63000



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>emb|AL138830.20| Human DNA sequence from clone RP3-399L15 on chromosome 6q21-22.2 Contains
              2 putative novel genes, complete sequence
          Length = 141924

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 160    aacataaattgaaaacctaa 179
              ||||||||||||||||||||
Sbjct: 111784 aacataaattgaaaacctaa 111803



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>gb|AC157572.4| Mus musculus BAC clone RP23-79O10 from chromosome 14, complete sequence
          Length = 242759

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 351    agttcctgggtagtggtaag 370
              ||||||||||||||||||||
Sbjct: 204677 agttcctgggtagtggtaag 204658



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>gb|AC019193.7| Homo sapiens BAC clone RP11-335L23 from 4, complete sequence
          Length = 177720

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 259    aaacgttctgtatttgcagt 278
              ||||||||||||||||||||
Sbjct: 134158 aaacgttctgtatttgcagt 134139



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 56       tgtataaaccccaaaaaata 75
                ||||||||||||||||||||
Sbjct: 17544603 tgtataaaccccaaaaaata 17544584



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>emb|AL928689.7| Mouse DNA sequence from clone RP23-35P3 on chromosome 2, complete
              sequence
          Length = 182529

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 293    catggaattggcactaggat 312
              ||||||||||||||||||||
Sbjct: 172432 catggaattggcactaggat 172451


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,221,786
Number of Sequences: 3902068
Number of extensions: 4221786
Number of successful extensions: 75442
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75398
Number of HSP's gapped (non-prelim): 44
length of query: 454
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 432
effective length of database: 17,147,199,772
effective search space: 7407590301504
effective search space used: 7407590301504
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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