Clone Name | rbastl32d07 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_139077.1| Danio rerio NIMA (never in mitosis gene a)-related kinase 8 (nek8), mRNA Length = 2816 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 264 ttctgtatttgcagtattaca 284 ||||||||||||||||||||| Sbjct: 2606 ttctgtatttgcagtattaca 2626
>gb|AY558077.1| Saccharomyces cerevisiae clone FLH113455.01X YBL097W gene, complete cds Length = 2188 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 312 tttttgtcagtagtatctcct 332 ||||||||||||||||||||| Sbjct: 1241 tttttgtcagtagtatctcct 1221
>emb|X79489.1|SCDNCH2 S.cerevisiae genomic DNA, chromosome II from Y element to ILS1 gene Length = 78600 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 312 tttttgtcagtagtatctcct 332 ||||||||||||||||||||| Sbjct: 36184 tttttgtcagtagtatctcct 36164
>emb|Z35858.1|SCYBL097W S.cerevisiae chromosome II reading frame ORF YBL097w Length = 2654 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 312 tttttgtcagtagtatctcct 332 ||||||||||||||||||||| Sbjct: 1627 tttttgtcagtagtatctcct 1607
>emb|CR392353.6| Zebrafish DNA sequence from clone CH211-9D19 in linkage group 11, complete sequence Length = 183599 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 264 ttctgtatttgcagtattaca 284 ||||||||||||||||||||| Sbjct: 34488 ttctgtatttgcagtattaca 34508
>gb|AF407580.1| Danio rerio NIMA-related kinase 8 (nek8) mRNA, complete cds Length = 2816 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 264 ttctgtatttgcagtattaca 284 ||||||||||||||||||||| Sbjct: 2606 ttctgtatttgcagtattaca 2626
>gb|AC104279.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1393_A07, complete sequence Length = 159932 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 tgtataaaccccaaaaaata 75 |||||||||||||||||||| Sbjct: 74408 tgtataaaccccaaaaaata 74389
>gb|AC124992.14| Mus musculus chromosome 10, clone RP23-149L10, complete sequence Length = 194736 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 attggcactaggatttttgt 318 |||||||||||||||||||| Sbjct: 101535 attggcactaggatttttgt 101516
>gb|AC125087.2| Mus musculus BAC clone RP24-143E18 from chromosome 14, complete sequence Length = 180794 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 agttcctgggtagtggtaag 370 |||||||||||||||||||| Sbjct: 149900 agttcctgggtagtggtaag 149919
>gb|AC124685.5| Mus musculus BAC clone RP24-385O22 from chromosome 2, complete sequence Length = 174583 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 catggaattggcactaggat 312 |||||||||||||||||||| Sbjct: 62981 catggaattggcactaggat 63000
>emb|AL138830.20| Human DNA sequence from clone RP3-399L15 on chromosome 6q21-22.2 Contains 2 putative novel genes, complete sequence Length = 141924 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 aacataaattgaaaacctaa 179 |||||||||||||||||||| Sbjct: 111784 aacataaattgaaaacctaa 111803
>gb|AC157572.4| Mus musculus BAC clone RP23-79O10 from chromosome 14, complete sequence Length = 242759 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 351 agttcctgggtagtggtaag 370 |||||||||||||||||||| Sbjct: 204677 agttcctgggtagtggtaag 204658
>gb|AC019193.7| Homo sapiens BAC clone RP11-335L23 from 4, complete sequence Length = 177720 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 aaacgttctgtatttgcagt 278 |||||||||||||||||||| Sbjct: 134158 aaacgttctgtatttgcagt 134139
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 tgtataaaccccaaaaaata 75 |||||||||||||||||||| Sbjct: 17544603 tgtataaaccccaaaaaata 17544584
>emb|AL928689.7| Mouse DNA sequence from clone RP23-35P3 on chromosome 2, complete sequence Length = 182529 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 catggaattggcactaggat 312 |||||||||||||||||||| Sbjct: 172432 catggaattggcactaggat 172451 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,221,786 Number of Sequences: 3902068 Number of extensions: 4221786 Number of successful extensions: 75442 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75398 Number of HSP's gapped (non-prelim): 44 length of query: 454 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 432 effective length of database: 17,147,199,772 effective search space: 7407590301504 effective search space used: 7407590301504 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)