ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl32c11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.20
2gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 0.20
3emb|AL928756.4|CNS08CBT Oryza sativa chromosome 12, . BAC OSJNBb... 42 0.20
4gb|AC123923.2| Mus musculus BAC clone RP24-228I17 from chromosom... 38 3.2
5emb|Z35637.1|CEC03C10 Caenorhabditis elegans Cosmid C03C10, comp... 38 3.2
6emb|AL390783.12| Human DNA sequence from clone RP11-109I13 on ch... 38 3.2
7gb|AC011356.6| Homo sapiens chromosome 5 clone CTC-359M8, comple... 38 3.2
8gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 255... 38 3.2

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 0.20
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 34      gaaggggaaagcaaatacaaaaggg 58
               ||||| |||||||||||||||||||
Sbjct: 2192856 gaaggcgaaagcaaatacaaaaggg 2192880



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 0.20
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 34      gaaggggaaagcaaatacaaaaggg 58
               ||||| |||||||||||||||||||
Sbjct: 2192800 gaaggcgaaagcaaatacaaaaggg 2192824



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>emb|AL928756.4|CNS08CBT Oryza sativa chromosome 12, . BAC OSJNBb0077O07 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 132703

 Score = 42.1 bits (21), Expect = 0.20
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 34    gaaggggaaagcaaatacaaaaggg 58
             ||||| |||||||||||||||||||
Sbjct: 75080 gaaggcgaaagcaaatacaaaaggg 75104



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>gb|AC123923.2| Mus musculus BAC clone RP24-228I17 from chromosome 1, complete sequence
          Length = 163182

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 24    attaaaatatgaaggggaa 42
             |||||||||||||||||||
Sbjct: 88489 attaaaatatgaaggggaa 88507



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>emb|Z35637.1|CEC03C10 Caenorhabditis elegans Cosmid C03C10, complete sequence
          Length = 31418

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 24   attaaaatatgaaggggaa 42
            |||||||||||||||||||
Sbjct: 6762 attaaaatatgaaggggaa 6744



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>emb|AL390783.12| Human DNA sequence from clone RP11-109I13 on chromosome 10 Contains part
              of the CACNB2 gene for calcium channel voltage-dependent
              beta 2 subunit and a novel gene, complete sequence
          Length = 177656

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 36     aggggaaagcaaatacaaa 54
              |||||||||||||||||||
Sbjct: 161970 aggggaaagcaaatacaaa 161988



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>gb|AC011356.6| Homo sapiens chromosome 5 clone CTC-359M8, complete sequence
          Length = 62242

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 36    aggggaaagcaaatacaaa 54
             |||||||||||||||||||
Sbjct: 31947 aggggaaagcaaatacaaa 31929



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>gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome
          Length = 2174500

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 35      aaggggaaagcaaatacaa 53
               |||||||||||||||||||
Sbjct: 1864772 aaggggaaagcaaatacaa 1864754


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 722,049
Number of Sequences: 3902068
Number of extensions: 722049
Number of successful extensions: 49076
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49035
Number of HSP's gapped (non-prelim): 41
length of query: 78
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 57
effective length of database: 17,151,101,840
effective search space: 977612804880
effective search space used: 977612804880
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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