ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl32c09 |
|---|---|
| Clone Library Name | barley_pub |
>ZNF81_HUMAN (P51508) Zinc finger protein 81 (HFZ20)| Length = 661 Score = 30.0 bits (66), Expect = 2.5 Identities = 12/31 (38%), Positives = 17/31 (54%) Frame = +1 Query: 229 KFPMGSCSSSCPEKGNLLTTRSHQHCKHNCH 321 KFP+G +++C E G + T RSH H Sbjct: 266 KFPIGEKANTCTEFGKIFTQRSHFFAPQKIH 296
>ACHA7_CHICK (P22770) Neuronal acetylcholine receptor protein, alpha-7 subunit| precursor Length = 502 Score = 30.0 bits (66), Expect = 2.5 Identities = 15/42 (35%), Positives = 19/42 (45%) Frame = -2 Query: 201 CIQDDRRIDFSRMSDCAYCKEKLGNGIVTFIGFRNALPVHCT 76 C RR S M ++ NG + +IGFR VHCT Sbjct: 357 CQHKQRRCSLSSMEMNTVSGQQCSNGNMLYIGFRGLDGVHCT 398
>RDRP_IAVI7 (P31341) RNA-directed RNA polymerase catalytic subunit (EC| 2.7.7.48) (Polymerase basic protein 1) (PB1) (RNA-directed RNA polymerase subunit P1) Length = 757 Score = 29.3 bits (64), Expect = 4.2 Identities = 15/47 (31%), Positives = 29/47 (61%) Frame = +2 Query: 41 YSYYQTSNFTNSVQCTGSAFLNPINVTMPFPSFSLQYAQSDILLKSI 181 + Y + +T + + TG+A LNPI+ +P + YAQ+D +L+++ Sbjct: 47 HQYSEKGKWTTNTE-TGAAQLNPIDGPLPEDNEPSGYAQTDCVLEAM 92
>SCD5_YEAST (P34758) Protein SCD5 (Protein FTB1)| Length = 872 Score = 29.3 bits (64), Expect = 4.2 Identities = 13/25 (52%), Positives = 18/25 (72%) Frame = +2 Query: 53 QTSNFTNSVQCTGSAFLNPINVTMP 127 Q +N ++S Q TG AFLN N+T+P Sbjct: 516 QFTNQSSSPQSTGPAFLNSPNITLP 540
>HEMA_IASE2 (P19701) Hemagglutinin precursor [Contains: Hemagglutinin HA1| chain; Hemagglutinin HA2 chain] Length = 564 Score = 28.9 bits (63), Expect = 5.5 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 5/50 (10%) Frame = +1 Query: 193 LYTPKKEHSIPFKFPMGSCSSSC-PEKGNLLTTRSHQHCKH----NCHKY 327 L + KK + P+GSC+S C ++G++ TT+ Q+ +C KY Sbjct: 273 LNSQKKSTILNTAVPIGSCTSKCHTDRGSISTTKPFQNISRISIGDCPKY 322
>YTHD3_MOUSE (Q8BYK6) YTH domain protein 3| Length = 585 Score = 28.9 bits (63), Expect = 5.5 Identities = 15/38 (39%), Positives = 22/38 (57%) Frame = +3 Query: 294 PSALQTQLPQIQNDQPGSQQQRAKPNSLDQPGSLRSRE 407 P +Q+QLPQ Q QP QQ+ P QP ++S++ Sbjct: 311 PPLVQSQLPQ-QQPQPPQPQQQQGPQPQAQPHQVQSQQ 347
>HEMA_IADCZ (P19696) Hemagglutinin precursor [Contains: Hemagglutinin HA1| chain; Hemagglutinin HA2 chain] Length = 564 Score = 28.5 bits (62), Expect = 7.2 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%) Frame = +1 Query: 193 LYTPKKEHSIPFKFPMGSCSSSC-PEKGNLLTTRSHQHCKH----NCHKY 327 L KK + P+GSC S C +KG+L TT+ Q+ +C +Y Sbjct: 273 LNNQKKSTILNTAIPIGSCVSKCHTDKGSLSTTKPFQNISRIAVGDCPRY 322
>RPO5_VARV (P33796) DNA-directed RNA polymerase 30 kDa polypeptide (EC| 2.7.7.6) Length = 259 Score = 28.5 bits (62), Expect = 7.2 Identities = 10/34 (29%), Positives = 20/34 (58%) Frame = -2 Query: 249 TGTHRKFKRYTMFFFRCIQDDRRIDFSRMSDCAY 148 +GT ++F RY +F +CI+ + ++ D +Y Sbjct: 111 SGTEKEFLRYLLFGIKCIKKGVEYNIDKIKDVSY 144
>RPO5_VACCV (P21603) DNA-directed RNA polymerase 30 kDa polypeptide (EC| 2.7.7.6) Length = 259 Score = 28.5 bits (62), Expect = 7.2 Identities = 10/34 (29%), Positives = 20/34 (58%) Frame = -2 Query: 249 TGTHRKFKRYTMFFFRCIQDDRRIDFSRMSDCAY 148 +GT ++F RY +F +CI+ + ++ D +Y Sbjct: 111 SGTEKEFLRYLLFGIKCIKKGVEYNIDKIKDVSY 144
>RPO5_VACCC (P21082) DNA-directed RNA polymerase 30 kDa polypeptide (EC| 2.7.7.6) Length = 259 Score = 28.5 bits (62), Expect = 7.2 Identities = 10/34 (29%), Positives = 20/34 (58%) Frame = -2 Query: 249 TGTHRKFKRYTMFFFRCIQDDRRIDFSRMSDCAY 148 +GT ++F RY +F +CI+ + ++ D +Y Sbjct: 111 SGTEKEFLRYLLFGIKCIKKGVEYNIDKIKDVSY 144
>RPO5_VACCA (O57187) DNA-directed RNA polymerase 30 kDa polypeptide (EC| 2.7.7.6) Length = 259 Score = 28.5 bits (62), Expect = 7.2 Identities = 10/34 (29%), Positives = 20/34 (58%) Frame = -2 Query: 249 TGTHRKFKRYTMFFFRCIQDDRRIDFSRMSDCAY 148 +GT ++F RY +F +CI+ + ++ D +Y Sbjct: 111 SGTEKEFLRYLLFGIKCIKKGVEYNIDKIKDVSY 144
>RBS_LACSA (Q40250) Ribulose bisphosphate carboxylase small chain, chloroplast| precursor (EC 4.1.1.39) (RuBisCO small subunit) Length = 181 Score = 28.1 bits (61), Expect = 9.4 Identities = 11/33 (33%), Positives = 16/33 (48%) Frame = -2 Query: 165 MSDCAYCKEKLGNGIVTFIGFRNALPVHCTEFV 67 M + CK++ N + IGF N V C F+ Sbjct: 141 MKEVGECKKEYPNAFIRVIGFDNIRQVQCISFI 173
>KBTB3_MOUSE (Q8BHI4) Kelch repeat and BTB domain-containing protein 3 (BTB and| kelch domain-containing protein 3) Length = 607 Score = 28.1 bits (61), Expect = 9.4 Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 6/46 (13%) Frame = +2 Query: 86 TGSAFLNPINVTMPFPSFS------LQYAQSDILLKSIRLSSCIHL 205 TG + NV M F S L A SD L+KSI L +C+HL Sbjct: 108 TGKTRITDDNVEMFFQLSSFLQVSFLSKACSDFLIKSISLVNCLHL 153
>HEMA_IATKM (P19702) Hemagglutinin precursor [Contains: Hemagglutinin HA1| chain; Hemagglutinin HA2 chain] Length = 564 Score = 28.1 bits (61), Expect = 9.4 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 5/50 (10%) Frame = +1 Query: 193 LYTPKKEHSIPFKFPMGSCSSSC-PEKGNLLTTRSHQHCKH----NCHKY 327 L + KK + P+GSC S C ++G++ TT+ Q+ +C KY Sbjct: 273 LNSQKKSTILNTAVPIGSCVSKCHTDRGSITTTKPFQNISRISIGDCPKY 322
>HEMA_IAGRE (P19698) Hemagglutinin precursor [Contains: Hemagglutinin HA1| chain; Hemagglutinin HA2 chain] Length = 564 Score = 28.1 bits (61), Expect = 9.4 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 5/46 (10%) Frame = +1 Query: 205 KKEHSIPFKFPMGSCSSSC-PEKGNLLTTRSHQHCKH----NCHKY 327 KK + P+GSC S C +KG+L TT+ Q+ +C +Y Sbjct: 277 KKSTILNTAIPIGSCVSKCHTDKGSLSTTKPFQNISRIAVGDCPRY 322
>HEMA_IACKA (P19695) Hemagglutinin precursor [Contains: Hemagglutinin HA1| chain; Hemagglutinin HA2 chain] Length = 564 Score = 28.1 bits (61), Expect = 9.4 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 5/50 (10%) Frame = +1 Query: 193 LYTPKKEHSIPFKFPMGSCSSSC-PEKGNLLTTRSHQHCKH----NCHKY 327 L + KK + P+GSC S C ++G++ TT+ Q+ +C KY Sbjct: 273 LNSQKKSTILNTAVPIGSCVSKCHTDRGSITTTKPFQNISRISIGDCPKY 322
>TXND2_HUMAN (Q86VQ3) Thioredoxin domain-containing protein 2| (Spermatid-specific thioredoxin-1) (Sptrx-1) Length = 553 Score = 28.1 bits (61), Expect = 9.4 Identities = 13/47 (27%), Positives = 23/47 (48%) Frame = +3 Query: 288 EVPSALQTQLPQIQNDQPGSQQQRAKPNSLDQPGSLRSRELRVLGDV 428 ++P +L+ +P + D P S ++ +P D P SL GD+ Sbjct: 388 DIPKSLEEAIPPKEIDIPKSPEETIQPKEDDSPKSLEEATPSKEGDI 434
>GLT3_WHEAT (P08488) Glutenin, high molecular weight subunit 12 precursor| Length = 660 Score = 28.1 bits (61), Expect = 9.4 Identities = 15/28 (53%), Positives = 16/28 (57%) Frame = +3 Query: 306 QTQLPQIQNDQPGSQQQRAKPNSLDQPG 389 Q Q P+ Q QPG QQ P SL QPG Sbjct: 410 QGQQPE-QEQQPGQGQQGYYPTSLQQPG 436
>GLT0_WHEAT (P10387) Glutenin, high molecular weight subunit DY10 precursor| Length = 648 Score = 28.1 bits (61), Expect = 9.4 Identities = 15/28 (53%), Positives = 16/28 (57%) Frame = +3 Query: 306 QTQLPQIQNDQPGSQQQRAKPNSLDQPG 389 Q Q P+ Q QPG QQ P SL QPG Sbjct: 400 QGQQPE-QEQQPGQGQQGYYPTSLQQPG 426 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,234,923 Number of Sequences: 219361 Number of extensions: 1265887 Number of successful extensions: 4114 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 3837 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4103 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2453576370 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
