ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl32c08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ATG15_DEBHA (Q6BLM0) Putative lipase ATG15 (EC 3.1.1.3) (Autopha... 28 4.0
2RR4_PROWI (O47032) Plastid 30S ribosomal protein S4 28 6.9

>ATG15_DEBHA (Q6BLM0) Putative lipase ATG15 (EC 3.1.1.3) (Autophagy-related|
           protein 15)
          Length = 615

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 36  RQQVEKHSPKLAELSRCQRSSAKSSNLFQVFTAF 137
           ++ +E HS +L EL+  Q S    SNL  V+ A+
Sbjct: 102 KEYLEAHSEELEELTTMQTSEVDESNLQDVYDAY 135



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>RR4_PROWI (O47032) Plastid 30S ribosomal protein S4|
          Length = 207

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
 Frame = +1

Query: 4   KHLLNHQHMNIVNRWRSTPLNLPSF-----PGVSVLQLKAQIYFRYLQ 132
           + L+NH H+N+ N+     +N+PS+       +SVL+   Q+   YLQ
Sbjct: 116 RQLINHGHINVNNK----NINIPSYICKINDIISVLKNSQQLIKNYLQ 159


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,563,400
Number of Sequences: 219361
Number of extensions: 679891
Number of successful extensions: 1972
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1970
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 1365190992
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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