Clone Information

BLAST Search Result

Clone Name	rbastl32c06
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|M95747.1\|WHTIF4F82B Wheat (clone p80k-34) initiation factor i...	428	e-117
2	gb\|M95746.1\|WHTSTPCDN Wheat (clone p80k-16) initiation factor is...	391	e-105
3	emb\|AL606594.4\| Oryza sativa genomic DNA, chromosome 4, BAC clon...	119	8e-24
4	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	119	8e-24
5	dbj\|AK065553.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	119	8e-24
6	dbj\|AK060761.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	119	8e-24
7	emb\|AL442115.2\| Oryza sativa genomic DNA, chromosome 4, BAC clon...	119	8e-24
8	emb\|AM156958.1\| Oryza sativa (indica cultivar-group) mRNA for pu...	117	3e-23
9	emb\|AM156957.1\| Oryza sativa (indica cultivar-group) mRNA for pu...	117	3e-23
10	emb\|AM156959.1\| Oryza glaberrima mRNA for putative eukaryotic tr...	109	7e-21
11	gb\|BT016928.1\| Zea mays clone E04912703C02.c mRNA sequence	56	1e-04
12	gb\|AY110434.1\| Zea mays CL533_2 mRNA sequence	52	0.001
13	gb\|AC151915.8\| Medicago truncatula clone mth2-30n12, complete se...	46	0.092
14	gb\|AC151743.27\| Medicago truncatula clone mth2-25e15, complete s...	46	0.092
15	emb\|Z69724.1\|HSU85B5 Human DNA sequence from clone LL0XNC01-85B5...	44	0.36
16	emb\|BX324157.4\| Zebrafish DNA sequence from clone DKEY-15N1 in l...	44	0.36
17	gb\|AY109824.1\| Zea mays CL533_1 mRNA sequence	44	0.36
18	gb\|AC134910.5\| Mus musculus BAC clone RP23-405O11 from chromosom...	42	1.4
19	emb\|AL157361.6\| Human DNA sequence from clone RP11-132L12 on chr...	42	1.4
20	gb\|AC026415.4\| Homo sapiens chromosome 5 clone CTD-2046I8, compl...	42	1.4
21	gb\|AC084472.1\|AC084472 Caenorhabditis briggsae cosmid CB048M21, ...	42	1.4
22	gb\|AC022127.4\|AC022127 Homo sapiens chromosome 5 clone CTD-2151N...	42	1.4
23	gb\|AC140845.2\| Mus musculus BAC clone RP24-386C13 from chromosom...	40	5.7
24	gb\|DP000012.1\| Macropus eugenii target 1 genomic scaffold	40	5.7
25	gb\|AC161931.6\| Mus musculus chromosome 3, clone RP23-290N20, com...	40	5.7
26	gb\|AC123554.3\| Mus musculus BAC clone RP23-135A9 from chromosome...	40	5.7
27	gb\|AC131080.13\| Mus musculus chromosome 16, clone RP23-438H16, c...	40	5.7
28	gb\|AC124740.4\| Mus musculus BAC clone RP23-356M1 from chromosome...	40	5.7
29	gb\|AC123057.4\| Mus musculus BAC clone RP23-184N6 from 3, complet...	40	5.7
30	gb\|AC128952.4\| Rattus norvegicus 14 BAC CH230-510F9 (Children's ...	40	5.7
31	emb\|BX927394.14\| Zebrafish DNA sequence from clone CH211-262I10 ...	40	5.7
32	emb\|AL450312.10\| Human DNA sequence from clone RP11-138L24 on ch...	40	5.7
33	emb\|AL354692.23\| Human DNA sequence from clone RP11-361M4 on chr...	40	5.7
34	emb\|AL354701.7\| Human DNA sequence from clone RP11-785H23 on chr...	40	5.7
35	gb\|AC099101.7\| Rattus norvegicus 14 BAC CH230-186B23 (Children's...	40	5.7
36	emb\|AL589738.6\| Mouse DNA sequence from clone RP23-322J11 on chr...	40	5.7
37	emb\|AJ400899.1\|PSA400899 Pisum sativum partial kdsA gene for Kdo...	40	5.7
38	emb\|BX927134.11\| Zebrafish DNA sequence from clone CH211-261C20 ...	40	5.7
39	gb\|AC108104.2\| Homo sapiens chromosome 5 clone RP11-198P15, comp...	40	5.7
40	gb\|AC008158.16\| Homo sapiens chromosome 17, clone RP11-42F20, co...	40	5.7
41	dbj\|AK135378.1\| Mus musculus 12 days embryo female mullerian duc...	40	5.7
42	dbj\|AK038355.1\| Mus musculus 16 days neonate thymus cDNA, RIKEN ...	40	5.7
43	gb\|AC151548.3\| Macropus eugenii clone ME_KBa-603H10, complete se...	40	5.7
44	gb\|AC084664.1\|CBRG47C14 Caenorhabditis briggsae cosmid G47C14, c...	40	5.7
45	dbj\|AP006628.1\| Onion yellows phytoplasma OY-M DNA, complete genome	40	5.7
46	emb\|AL773512.6\| Mouse DNA sequence from clone RP23-454N6 on chro...	40	5.7
47	gb\|AC145041.3\| Macropus eugenii clone ME_KBa-210M21, complete se...	40	5.7
48	emb\|CR751546.4\| Zebrafish DNA sequence from clone CH211-53M6 in ...	40	5.7
49	emb\|CT010479.25\| Mouse DNA sequence from clone RP23-233G23 on ch...	40	5.7
50	emb\|AL161752.4\|CNS01RHH Human chromosome 14 DNA sequence BAC R-9...	40	5.7
51	gb\|AC163101.9\| Mus musculus chromosome 18, clone RP24-177G6, com...	40	5.7
52	gb\|AC102618.19\| Mus musculus chromosome 18, clone RP23-426G16, c...	40	5.7
53	gb\|AC153487.1\| Taeniopygia guttata clone TG__Ba0319A15, complete...	40	5.7
54	gb\|AC117544.8\| Mus musculus chromosome 8, clone RP23-99L5, compl...	40	5.7

>gb|M95747.1|WHTIF4F82B Wheat (clone p80k-34) initiation factor isozyme 4F p82 subunit mRNA,
            complete cds
          Length = 2887

 Score =  428 bits (216), Expect = e-117
 Identities = 231/236 (97%)
 Strand = Plus / Minus

                                                                        
Query: 180  gccttgttcattcccaggctccagcaagagttaggccgccgtcgccgagagaccaaaatc 239
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 2696 gccttgttcattcccaggctccagcgagagttaggccgccgtcgccgagagaccaaaatc 2637

                                                                        
Query: 240  catggcttcttcctttcctccaaacaataatcaacactcatgtaacctcgcaaaaatata 299
            |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 2636 catggcttcttcctttcctcgaaacaataatcaacactcatgtgacctcgcaaaaatata 2577

                                                                        
Query: 300  cagctcaaaactggctgttgctcacatcccagttcctctgcggtgaaacacctaagctat 359
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2576 cagctcaaaactggctgttgctcacatcccagttcctctgcggtgaaacacctaagctat 2517

                                                                    
Query: 360  agagaatacaccatacgctgcctttcactagacacagcacctgagaagttgagctg 415
            ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 2516 agagaatacaccatacgctgtttttcactagacacagcacctgagaagttgagctg 2461



 Score =  287 bits (145), Expect = 1e-74
 Identities = 151/153 (98%)
 Strand = Plus / Minus

                                                                        
Query: 6    aaaataatcttagatccagttttcgactcctacaatgctgacacgatatattgcaaccga 65
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 2862 aaaataatcttagattcagttttcgactcctacaatgctgacacgatatattgtaaccga 2803

                                                                        
Query: 66   cagaatactccaaaaccacagtacattgttacaaattgtgtaagaactgaaaagaaataa 125
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2802 cagaatactccaaaaccacagtacattgttacaaattgtgtaagaactgaaaagaaataa 2743

                                             
Query: 126  taacattggaggagacacaaaaacatcccattt 158
            |||||||||||||||||||||||||||||||||
Sbjct: 2742 taacattggaggagacacaaaaacatcccattt 2710

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>gb|M95746.1|WHTSTPCDN Wheat (clone p80k-16) initiation factor isozyme 4F p82 subunit mRNA
            sequence
          Length = 2863

 Score =  391 bits (197), Expect = e-105
 Identities = 229/237 (96%), Gaps = 2/237 (0%)
 Strand = Plus / Minus

                                                                        
Query: 180  gccttgttcattcccaggctccagcaagagttaggccgccgtcgcc-gagagaccaaaat 238
            |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 2693 gccttgttcattcccaggctccagcaagagttaggccgccgtcgccagagagaccaaa-t 2635

                                                                        
Query: 239  ccatggcttcttcctttcctccaaacaataatcaacactcatgtaacctcgcaaaaatat 298
            |||||||||||| || ||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 2634 ccatggcttctttctgtcctcgaaacaataatcaacactcatgtgacctcgcaaaaatat 2575

                                                                        
Query: 299  acagctcaaaactggctgttgctcacatcccagttcctctgcggtgaaacacctaagcta 358
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2574 acagctcaaaactggctgttgctcacatcccagttcctctgcggtgaaacacctaagcta 2515

                                                                     
Query: 359  tagagaatacaccatacgctgcctttcactagacacagcacctgagaagttgagctg 415
            |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 2514 tagagaatacaccatacgctgattttcactagacacagcacctgagaagttgagctg 2458



 Score =  293 bits (148), Expect = 2e-76
 Identities = 157/160 (98%)
 Strand = Plus / Minus

                                                                        
Query: 1    aagccaaaataatcttagatccagttttcgactcctacaatgctgacacgatatattgca 60
            |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 2863 aagccaaaatgatcttagattcagttttcgactcctacaatgctgacacgatatattgta 2804

                                                                        
Query: 61   accgacagaatactccaaaaccacagtacattgttacaaattgtgtaagaactgaaaaga 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2803 accgacagaatactccaaaaccacagtacattgttacaaattgtgtaagaactgaaaaga 2744

                                                    
Query: 121  aataataacattggaggagacacaaaaacatcccatttga 160
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2743 aataataacattggaggagacacaaaaacatcccatttga 2704

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>emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0029H02,
             complete sequence
          Length = 173171

 Score =  119 bits (60), Expect = 8e-24
 Identities = 129/154 (83%), Gaps = 16/154 (10%)
 Strand = Plus / Plus

                                                                         
Query: 233   caaaatccatggcttcttcctttcctcc-------aaacaataatcaacactcatgtaac 285
             |||||||||||||||||| ||||||| |       |||||||||| ||||||||| | ||
Sbjct: 42261 caaaatccatggcttctttctttccttcgttgtcgaaacaataatgaacactcatctgac 42320

                                                                         
Query: 286   ctcgcaaaaatatacagctcaaaactggctgttgctcacatccc---------agttcct 336
             || ||||||||||||||| ||||||||||||||||||||||| |         |||||||
Sbjct: 42321 cttgcaaaaatatacagcacaaaactggctgttgctcacatctccagtacgagagttcct 42380

                                               
Query: 337   ctgcggtgaaacacctaagctatagagaatacac 370
             ||| ||||||||||||||||||||||||||||||
Sbjct: 42381 ctggggtgaaacacctaagctatagagaatacac 42414



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 77/86 (89%), Gaps = 1/86 (1%)
 Strand = Plus / Plus

                                                                         
Query: 44    tgacacgatatattgcaa-ccgacagaatactccaaaaccacagtacattgttacaaatt 102
             ||||||||||||||| || || ||||||||||||||||||| |||||||||||||||| |
Sbjct: 42105 tgacacgatatattgtaaaccaacagaatactccaaaaccatagtacattgttacaaaat 42164

                                       
Query: 103   gtgtaagaactgaaaagaaataataa 128
             ||||| | || |||||||| ||||||
Sbjct: 42165 gtgtacgcacagaaaagaactaataa 42190

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  119 bits (60), Expect = 8e-24
 Identities = 129/154 (83%), Gaps = 16/154 (10%)
 Strand = Plus / Plus

                                                                            
Query: 233      caaaatccatggcttcttcctttcctcc-------aaacaataatcaacactcatgtaac 285
                |||||||||||||||||| ||||||| |       |||||||||| ||||||||| | ||
Sbjct: 24921676 caaaatccatggcttctttctttccttcgttgtcgaaacaataatgaacactcatctgac 24921735

                                                                            
Query: 286      ctcgcaaaaatatacagctcaaaactggctgttgctcacatccc---------agttcct 336
                || ||||||||||||||| ||||||||||||||||||||||| |         |||||||
Sbjct: 24921736 cttgcaaaaatatacagcacaaaactggctgttgctcacatctccagtacgagagttcct 24921795

                                                  
Query: 337      ctgcggtgaaacacctaagctatagagaatacac 370
                ||| ||||||||||||||||||||||||||||||
Sbjct: 24921796 ctggggtgaaacacctaagctatagagaatacac 24921829



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 77/86 (89%), Gaps = 1/86 (1%)
 Strand = Plus / Plus

                                                                            
Query: 44       tgacacgatatattgcaa-ccgacagaatactccaaaaccacagtacattgttacaaatt 102
                ||||||||||||||| || || ||||||||||||||||||| |||||||||||||||| |
Sbjct: 24921520 tgacacgatatattgtaaaccaacagaatactccaaaaccatagtacattgttacaaaat 24921579

                                          
Query: 103      gtgtaagaactgaaaagaaataataa 128
                ||||| | || |||||||| ||||||
Sbjct: 24921580 gtgtacgcacagaaaagaactaataa 24921605

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>dbj|AK065553.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013027N14, full
            insert sequence
          Length = 2907

 Score =  119 bits (60), Expect = 8e-24
 Identities = 129/154 (83%), Gaps = 16/154 (10%)
 Strand = Plus / Minus

                                                                        
Query: 233  caaaatccatggcttcttcctttcctcc-------aaacaataatcaacactcatgtaac 285
            |||||||||||||||||| ||||||| |       |||||||||| ||||||||| | ||
Sbjct: 2639 caaaatccatggcttctttctttccttcgttgtcgaaacaataatgaacactcatctgac 2580

                                                                        
Query: 286  ctcgcaaaaatatacagctcaaaactggctgttgctcacatccc---------agttcct 336
            || ||||||||||||||| ||||||||||||||||||||||| |         |||||||
Sbjct: 2579 cttgcaaaaatatacagcacaaaactggctgttgctcacatctccagtacgagagttcct 2520

                                              
Query: 337  ctgcggtgaaacacctaagctatagagaatacac 370
            ||| ||||||||||||||||||||||||||||||
Sbjct: 2519 ctggggtgaaacacctaagctatagagaatacac 2486



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 77/86 (89%), Gaps = 1/86 (1%)
 Strand = Plus / Minus

                                                                        
Query: 44   tgacacgatatattgcaa-ccgacagaatactccaaaaccacagtacattgttacaaatt 102
            ||||||||||||||| || || ||||||||||||||||||| |||||||||||||||| |
Sbjct: 2795 tgacacgatatattgtaaaccaacagaatactccaaaaccatagtacattgttacaaaat 2736

                                      
Query: 103  gtgtaagaactgaaaagaaataataa 128
            ||||| | || |||||||| ||||||
Sbjct: 2735 gtgtacgcacagaaaagaactaataa 2710

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>dbj|AK060761.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-A02, full
            insert sequence
          Length = 1712

 Score =  119 bits (60), Expect = 8e-24
 Identities = 129/154 (83%), Gaps = 16/154 (10%)
 Strand = Plus / Minus

                                                                        
Query: 233  caaaatccatggcttcttcctttcctcc-------aaacaataatcaacactcatgtaac 285
            |||||||||||||||||| ||||||| |       |||||||||| ||||||||| | ||
Sbjct: 1545 caaaatccatggcttctttctttccttcgttgtcgaaacaataatgaacactcatctgac 1486

                                                                        
Query: 286  ctcgcaaaaatatacagctcaaaactggctgttgctcacatccc---------agttcct 336
            || ||||||||||||||| ||||||||||||||||||||||| |         |||||||
Sbjct: 1485 cttgcaaaaatatacagcacaaaactggctgttgctcacatctccagtacgagagttcct 1426

                                              
Query: 337  ctgcggtgaaacacctaagctatagagaatacac 370
            ||| ||||||||||||||||||||||||||||||
Sbjct: 1425 ctggggtgaaacacctaagctatagagaatacac 1392



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 77/86 (89%), Gaps = 1/86 (1%)
 Strand = Plus / Minus

                                                                        
Query: 44   tgacacgatatattgcaa-ccgacagaatactccaaaaccacagtacattgttacaaatt 102
            ||||||||||||||| || || ||||||||||||||||||| |||||||||||||||| |
Sbjct: 1701 tgacacgatatattgtaaaccaacagaatactccaaaaccatagtacattgttacaaaat 1642

                                      
Query: 103  gtgtaagaactgaaaagaaataataa 128
            ||||| | || |||||||| ||||||
Sbjct: 1641 gtgtacgcacagaaaagaactaataa 1616

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>emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0711G06, complete
             sequence
          Length = 148644

 Score =  119 bits (60), Expect = 8e-24
 Identities = 129/154 (83%), Gaps = 16/154 (10%)
 Strand = Plus / Plus

                                                                         
Query: 233   caaaatccatggcttcttcctttcctcc-------aaacaataatcaacactcatgtaac 285
             |||||||||||||||||| ||||||| |       |||||||||| ||||||||| | ||
Sbjct: 49790 caaaatccatggcttctttctttccttcgttgtcgaaacaataatgaacactcatctgac 49849

                                                                         
Query: 286   ctcgcaaaaatatacagctcaaaactggctgttgctcacatccc---------agttcct 336
             || ||||||||||||||| ||||||||||||||||||||||| |         |||||||
Sbjct: 49850 cttgcaaaaatatacagcacaaaactggctgttgctcacatctccagtacgagagttcct 49909

                                               
Query: 337   ctgcggtgaaacacctaagctatagagaatacac 370
             ||| ||||||||||||||||||||||||||||||
Sbjct: 49910 ctggggtgaaacacctaagctatagagaatacac 49943



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 77/86 (89%), Gaps = 1/86 (1%)
 Strand = Plus / Plus

                                                                         
Query: 44    tgacacgatatattgcaa-ccgacagaatactccaaaaccacagtacattgttacaaatt 102
             ||||||||||||||| || || ||||||||||||||||||| |||||||||||||||| |
Sbjct: 49634 tgacacgatatattgtaaaccaacagaatactccaaaaccatagtacattgttacaaaat 49693

                                       
Query: 103   gtgtaagaactgaaaagaaataataa 128
             ||||| | || |||||||| ||||||
Sbjct: 49694 gtgtacgcacagaaaagaactaataa 49719

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>emb|AM156958.1| Oryza sativa (indica cultivar-group) mRNA for putative eukaryotic
            translation initiation factor 4 gamma (eif(iso)4g gene),
            cultivar Gigante
          Length = 2599

 Score =  117 bits (59), Expect = 3e-23
 Identities = 103/119 (86%), Gaps = 9/119 (7%)
 Strand = Plus / Minus

                                                                        
Query: 261  aaacaataatcaacactcatgtaacctcgcaaaaatatacagctcaaaactggctgttgc 320
            |||||||||| ||||||||| | |||| ||||||||||||||| ||||||||||||||||
Sbjct: 2572 aaacaataatgaacactcatctgaccttgcaaaaatatacagcacaaaactggctgttgc 2513

                                                                       
Query: 321  tcacatccc---------agttcctctgcggtgaaacacctaagctatagagaatacac 370
            ||||||| |         |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 2512 tcacatctccagtacgagagttcctctggggtgaaacacctaagctatagagaatacac 2454

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>emb|AM156957.1| Oryza sativa (indica cultivar-group) mRNA for putative eukaryotic
            translation initiation factor 4 gamma (eif(iso)4g gene),
            cultivar IR64
          Length = 2599

 Score =  117 bits (59), Expect = 3e-23
 Identities = 128/153 (83%), Gaps = 16/153 (10%)
 Strand = Plus / Minus

                                                                        
Query: 234  aaaatccatggcttcttcctttcc-------tccaaacaataatcaacactcatgtaacc 286
            ||||||||||||||||| ||||||       || |||||||||| ||||||||| | |||
Sbjct: 2599 aaaatccatggcttctttctttccttcgttgtcgaaacaataatgaacactcatctgacc 2540

                                                                        
Query: 287  tcgcaaaaatatacagctcaaaactggctgttgctcacatccc---------agttcctc 337
            | ||||||||||||||| ||||||||||||||||||||||| |         ||||||||
Sbjct: 2539 ttgcaaaaatatacagcacaaaactggctgttgctcacatctccagtacgagagttcctc 2480

                                             
Query: 338  tgcggtgaaacacctaagctatagagaatacac 370
            || ||||||||||||||||||||||||||||||
Sbjct: 2479 tggggtgaaacacctaagctatagagaatacac 2447

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>emb|AM156959.1| Oryza glaberrima mRNA for putative eukaryotic translation initiation
            factor 4 gamma (eif(iso)4g gene), cultivar Tog5681
          Length = 2699

 Score =  109 bits (55), Expect = 7e-21
 Identities = 102/119 (85%), Gaps = 9/119 (7%)
 Strand = Plus / Minus

                                                                        
Query: 261  aaacaataatcaacactcatgtaacctcgcaaaaatatacagctcaaaactggctgttgc 320
            |||||||||  ||||||||| | |||| ||||||||||||||| ||||||||||||||||
Sbjct: 2666 aaacaataacgaacactcatctgaccttgcaaaaatatacagcacaaaactggctgttgc 2607

                                                                       
Query: 321  tcacatccc---------agttcctctgcggtgaaacacctaagctatagagaatacac 370
            ||||||| |         |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 2606 tcacatctccagtacgagagttcctctggggtgaaacacctaagctatagagaatacac 2548

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>gb|BT016928.1| Zea mays clone E04912703C02.c mRNA sequence
          Length = 249

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                   
Query: 272 aacactcatgtaacctcgcaaaaatatacagctcaaaactggctgttgctcacatc 327
           ||||||||| | | ||||||||| |||||||| |||||||||||||| ||| ||||
Sbjct: 132 aacactcatctgatctcgcaaaattatacagcccaaaactggctgttcctcgcatc 187



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 234 aaaatccatggcttcttcctttcc 257
           ||||||||||||||||| ||||||
Sbjct: 74  aaaatccatggcttctttctttcc 97

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>gb|AY110434.1| Zea mays CL533_2 mRNA sequence
          Length = 843

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                     
Query: 286 ctcgcaaaaatatacagctcaaaactggctgttgctcacatc 327
           ||||||||| |||||||| |||||||||||||| ||| ||||
Sbjct: 600 ctcgcaaaattatacagcccaaaactggctgttcctcgcatc 559



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 234 aaaatccatggcttcttcctttcc 257
           ||||||||||||||||| ||||||
Sbjct: 672 aaaatccatggcttctttctttcc 649

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>gb|AC151915.8| Medicago truncatula clone mth2-30n12, complete sequence
          Length = 92346

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 143   caaaaacatcccatttgacagaagaag 169
             |||||||||||||||||| ||||||||
Sbjct: 45816 caaaaacatcccatttgagagaagaag 45842

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>gb|AC151743.27| Medicago truncatula clone mth2-25e15, complete sequence
          Length = 105045

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 143   caaaaacatcccatttgacagaagaag 169
             |||||||||||||||||| ||||||||
Sbjct: 28363 caaaaacatcccatttgagagaagaag 28337

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>emb|Z69724.1|HSU85B5 Human DNA sequence from clone LL0XNC01-85B5 on chromosome X, complete
            sequence
          Length = 39550

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 107  aagaactgaaaagaaataataacatt 132
            |||| |||||||||||||||||||||
Sbjct: 3229 aagagctgaaaagaaataataacatt 3204

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>emb|BX324157.4| Zebrafish DNA sequence from clone DKEY-15N1 in linkage group 3,
             complete sequence
          Length = 272769

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 38    caatgctgacacgatatattgcaacc 63
             ||||||||| ||||||||||||||||
Sbjct: 18590 caatgctgaaacgatatattgcaacc 18565

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>gb|AY109824.1| Zea mays CL533_1 mRNA sequence
          Length = 2894

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 286  ctcgcaaaaatatacagctcaaaactggctgttgctca 323
            ||||||||| |||||||||||||| || ||||| ||||
Sbjct: 2656 ctcgcaaaattatacagctcaaaattgtctgttcctca 2619

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>gb|AC134910.5| Mus musculus BAC clone RP23-405O11 from chromosome 5, complete sequence
          Length = 200538

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 9      ataatcttagatccagttttc 29
              |||||||||||||||||||||
Sbjct: 141030 ataatcttagatccagttttc 141010

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>emb|AL157361.6| Human DNA sequence from clone RP11-132L12 on chromosome 13q21.33-22.3
             Contains a signal sequence receptor, alpha
             (translocon-associated protein alpha) (SSR1) pseudogene,
             complete sequence
          Length = 151603

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 191   tcccaggctccagcaagagtt 211
             |||||||||||||||||||||
Sbjct: 87107 tcccaggctccagcaagagtt 87087

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>gb|AC026415.4| Homo sapiens chromosome 5 clone CTD-2046I8, complete sequence
          Length = 67124

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 191  tcccaggctccagcaagagtt 211
            |||||||||||||||||||||
Sbjct: 3598 tcccaggctccagcaagagtt 3618

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>gb|AC084472.1|AC084472 Caenorhabditis briggsae cosmid CB048M21, complete sequence
          Length = 62355

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 1     aagccaaaataatcttagatc 21
             |||||||||||||||||||||
Sbjct: 14713 aagccaaaataatcttagatc 14733

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>gb|AC022127.4|AC022127 Homo sapiens chromosome 5 clone CTD-2151N11, complete sequence
          Length = 83029

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 191   tcccaggctccagcaagagtt 211
             |||||||||||||||||||||
Sbjct: 34025 tcccaggctccagcaagagtt 34005

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>gb|AC140845.2| Mus musculus BAC clone RP24-386C13 from chromosome 8, complete sequence
          Length = 153426

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 114   gaaaagaaataataacattg 133
             ||||||||||||||||||||
Sbjct: 39323 gaaaagaaataataacattg 39342

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>gb|DP000012.1| Macropus eugenii target 1 genomic scaffold
          Length = 1996640

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 318     tgctcacatcccagttcctc 337
               ||||||||||||||||||||
Sbjct: 1171605 tgctcacatcccagttcctc 1171586

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>gb|AC161931.6| Mus musculus chromosome 3, clone RP23-290N20, complete sequence
          Length = 186062

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 98     aaattgtgtaagaactgaaa 117
              ||||||||||||||||||||
Sbjct: 107485 aaattgtgtaagaactgaaa 107504

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>gb|AC123554.3| Mus musculus BAC clone RP23-135A9 from chromosome 13, complete sequence
          Length = 205869

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 239   ccatggcttcttcctttcct 258
             ||||||||||||||||||||
Sbjct: 31484 ccatggcttcttcctttcct 31503

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>gb|AC131080.13| Mus musculus chromosome 16, clone RP23-438H16, complete sequence
          Length = 192584

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 94     ttacaaattgtgtaagaactgaaaagaaataa 125
              |||||||| || ||||||||||||| ||||||
Sbjct: 132634 ttacaaatagtttaagaactgaaaataaataa 132665

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>gb|AC124740.4| Mus musculus BAC clone RP23-356M1 from chromosome 18, complete sequence
          Length = 190023

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 192   cccaggctccagcaagagtt 211
             ||||||||||||||||||||
Sbjct: 97827 cccaggctccagcaagagtt 97808

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>gb|AC123057.4| Mus musculus BAC clone RP23-184N6 from 3, complete sequence
          Length = 223068

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 389    agacacagcacctgagaagttgagctgg 416
              ||||||||||| |||||||| |||||||
Sbjct: 125032 agacacagcacttgagaagtagagctgg 125059

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>gb|AC128952.4| Rattus norvegicus 14 BAC CH230-510F9 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 170859

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 113   tgaaaagaaataataacatt 132
             ||||||||||||||||||||
Sbjct: 30825 tgaaaagaaataataacatt 30844

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>emb|BX927394.14| Zebrafish DNA sequence from clone CH211-262I10 in linkage group 21,
              complete sequence
          Length = 164899

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 35     ctacaatgctgacacgatatattg 58
              |||||||||||| |||||||||||
Sbjct: 122731 ctacaatgctgaaacgatatattg 122708

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>emb|AL450312.10| Human DNA sequence from clone RP11-138L24 on chromosome 9, complete
           sequence
          Length = 164559

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 101 ttgtgtaagaactgaaaagaaata 124
           |||||||||||||||||| |||||
Sbjct: 55  ttgtgtaagaactgaaaaaaaata 32

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>emb|AL354692.23| Human DNA sequence from clone RP11-361M4 on chromosome 9 Contains a
             novel pseudogene, complete sequence
          Length = 110443

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 290   caaaaatatacagctcaaaa 309
             ||||||||||||||||||||
Sbjct: 35208 caaaaatatacagctcaaaa 35189

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>emb|AL354701.7| Human DNA sequence from clone RP11-785H23 on chromosome 9 Contains the 3'
              end of a novel gene, and a novel pseudogene, complete
              sequence
          Length = 131366

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 101    ttgtgtaagaactgaaaagaaata 124
              |||||||||||||||||| |||||
Sbjct: 129421 ttgtgtaagaactgaaaaaaaata 129398

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>gb|AC099101.7| Rattus norvegicus 14 BAC CH230-186B23 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 211584

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 113   tgaaaagaaataataacatt 132
             ||||||||||||||||||||
Sbjct: 41625 tgaaaagaaataataacatt 41606

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>emb|AL589738.6| Mouse DNA sequence from clone RP23-322J11 on chromosome 13 Contains the
             Foxq1 gene for forkhead box Q1 (Hfh1l), two novel genes
             and two CpG islands, complete sequence
          Length = 187709

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 186   ttcattcccaggctccagca 205
             ||||||||||||||||||||
Sbjct: 35935 ttcattcccaggctccagca 35916

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>emb|AJ400899.1|PSA400899 Pisum sativum partial kdsA gene for Kdo-8-phosphate synthase, exons
           1-4
          Length = 1812

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 106 taagaactgaaaagaaataa 125
           ||||||||||||||||||||
Sbjct: 639 taagaactgaaaagaaataa 620

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>emb|BX927134.11| Zebrafish DNA sequence from clone CH211-261C20 in linkage group 20,
             complete sequence
          Length = 86384

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 113   tgaaaagaaataataacatt 132
             ||||||||||||||||||||
Sbjct: 84744 tgaaaagaaataataacatt 84763

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>gb|AC108104.2| Homo sapiens chromosome 5 clone RP11-198P15, complete sequence
          Length = 96678

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 96    acaaattgtgtaagaactga 115
             ||||||||||||||||||||
Sbjct: 56401 acaaattgtgtaagaactga 56382

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>gb|AC008158.16| Homo sapiens chromosome 17, clone RP11-42F20, complete sequence
          Length = 148110

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 183   ttgttcattcccaggctcca 202
             ||||||||||||||||||||
Sbjct: 70836 ttgttcattcccaggctcca 70817

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>dbj|AK135378.1| Mus musculus 12 days embryo female mullerian duct includes
            surrounding region cDNA, RIKEN full-length enriched
            library, clone:6820409O14 product:unclassifiable, full
            insert sequence
          Length = 3242

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 300  cagctcaaaactggctgttg 319
            ||||||||||||||||||||
Sbjct: 2547 cagctcaaaactggctgttg 2566

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>dbj|AK038355.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length
           enriched library, clone:A130097D18
           product:unclassifiable, full insert sequence
          Length = 719

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 192 cccaggctccagcaagagtt 211
           ||||||||||||||||||||
Sbjct: 28  cccaggctccagcaagagtt 9

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>gb|AC151548.3| Macropus eugenii clone ME_KBa-603H10, complete sequence
          Length = 111549

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 318    tgctcacatcccagttcctc 337
              ||||||||||||||||||||
Sbjct: 108918 tgctcacatcccagttcctc 108899

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>gb|AC084664.1|CBRG47C14 Caenorhabditis briggsae cosmid G47C14, complete sequence
          Length = 41476

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 103  gtgtaagaactgaaaagaaa 122
            ||||||||||||||||||||
Sbjct: 5836 gtgtaagaactgaaaagaaa 5855

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>dbj|AP006628.1| Onion yellows phytoplasma OY-M DNA, complete genome
          Length = 860631

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 106    taagaactgaaaagaaataataac 129
              |||||||| |||||||||||||||
Sbjct: 183747 taagaacttaaaagaaataataac 183724

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>emb|AL773512.6| Mouse DNA sequence from clone RP23-454N6 on chromosome 2, complete
             sequence
          Length = 159731

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 114   gaaaagaaataataacattg 133
             ||||||||||||||||||||
Sbjct: 65829 gaaaagaaataataacattg 65810

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>gb|AC145041.3| Macropus eugenii clone ME_KBa-210M21, complete sequence
          Length = 137667

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 318  tgctcacatcccagttcctc 337
            ||||||||||||||||||||
Sbjct: 1230 tgctcacatcccagttcctc 1211

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>emb|CR751546.4| Zebrafish DNA sequence from clone CH211-53M6 in linkage group 20,
           complete sequence
          Length = 9831

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 113 tgaaaagaaataataacatt 132
           ||||||||||||||||||||
Sbjct: 360 tgaaaagaaataataacatt 379

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>emb|CT010479.25| Mouse DNA sequence from clone RP23-233G23 on chromosome 17, complete
              sequence
          Length = 203311

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 302    gctcaaaactggctgttgct 321
              ||||||||||||||||||||
Sbjct: 133196 gctcaaaactggctgttgct 133215

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>emb|AL161752.4|CNS01RHH Human chromosome 14 DNA sequence BAC R-99L13 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 178433

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 126   taacattggaggagacacaaaaac 149
             ||||||||||||||||||| ||||
Sbjct: 93093 taacattggaggagacacataaac 93116

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>gb|AC163101.9| Mus musculus chromosome 18, clone RP24-177G6, complete sequence
          Length = 154555

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 300    cagctcaaaactggctgttg 319
              ||||||||||||||||||||
Sbjct: 125944 cagctcaaaactggctgttg 125963

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>gb|AC102618.19| Mus musculus chromosome 18, clone RP23-426G16, complete sequence
          Length = 242449

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 300   cagctcaaaactggctgttg 319
             ||||||||||||||||||||
Sbjct: 68402 cagctcaaaactggctgttg 68421

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>gb|AC153487.1| Taeniopygia guttata clone TG__Ba0319A15, complete sequence
          Length = 136080

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 190   ttcccaggctccagcaagag 209
             ||||||||||||||||||||
Sbjct: 42008 ttcccaggctccagcaagag 41989

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>gb|AC117544.8| Mus musculus chromosome 8, clone RP23-99L5, complete sequence
          Length = 179585

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 114  gaaaagaaataataacattg 133
            ||||||||||||||||||||
Sbjct: 7379 gaaaagaaataataacattg 7360


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,559,735
Number of Sequences: 3902068
Number of extensions: 4559735
Number of successful extensions: 96701
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96517
Number of HSP's gapped (non-prelim): 178
length of query: 422
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 400
effective length of database: 17,147,199,772
effective search space: 6858879908800
effective search space used: 6858879908800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result