ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl32c03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FBX44_MOUSE (Q8BK26) F-box only protein 44 (F-box only protein 6a) 29 2.5
2S14L3_HUMAN (Q9UDX4) SEC14-like protein 3 (Tocopherol-associated... 28 5.7
3LAMA3_MOUSE (Q61789) Laminin alpha-3 chain precursor (Nicein alp... 27 9.7

>FBX44_MOUSE (Q8BK26) F-box only protein 44 (F-box only protein 6a)|
          Length = 255

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 10/43 (23%), Positives = 21/43 (48%)
 Frame = -1

Query: 287 NVKGSSQDCTVNVFAHRKVAKLIIRANPVTDLWQHFSSSILVW 159
           N+    ++  + +F H    +L++R  PV  LW+     + +W
Sbjct: 5   NINELPENILLELFIHIPARQLLLRCRPVCSLWRDLIDLVTLW 47



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>S14L3_HUMAN (Q9UDX4) SEC14-like protein 3 (Tocopherol-associated protein 2)|
          Length = 400

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 147 TNVLPYQNGRAEMLPKIGNRVCSD 218
           T+VLP Q   A M+P+ GN  CS+
Sbjct: 334 TDVLPSQRYNAHMVPEDGNLTCSE 357



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>LAMA3_MOUSE (Q61789) Laminin alpha-3 chain precursor (Nicein alpha subunit)|
          Length = 3333

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
 Frame = +2

Query: 8   QNGGHFLQNSQCPACN-PDSQIFH---RLLDGK*RGWKQKKKSHGLE 136
           Q  GH +Q   C  CN  DS+  H     +DG  R W+    S G +
Sbjct: 88  QGSGHTIQGQFCDYCNSEDSRKAHPASHAIDGSERWWQSPPLSSGTQ 134


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,577,252
Number of Sequences: 219361
Number of extensions: 794359
Number of successful extensions: 1689
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1689
length of database: 80,573,946
effective HSP length: 87
effective length of database: 61,489,539
effective search space used: 1475748936
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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