ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl32c03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC090821.13| Homo sapiens chromosome 8, clone CTD-2309H9, com... 40 4.4
2gb|AC010099.10| Homo sapiens BAC clone RP11-420H19 from 7, compl... 40 4.4
3emb|CR376785.10| Zebrafish DNA sequence from clone CH211-266K8 i... 40 4.4
4emb|BX322570.4| Zebrafish DNA sequence from clone DKEY-27H10 in ... 40 4.4
5emb|AL844217.7| Zebrafish DNA sequence from clone DKEY-218L17, c... 40 4.4
6gb|AC155634.1| Mus musculus BAC clone RP24-468P7 from 12, comple... 40 4.4
7emb|BX255939.3| Zebrafish DNA sequence from clone DKEY-5G7 in li... 40 4.4

>gb|AC090821.13| Homo sapiens chromosome 8, clone CTD-2309H9, complete sequence
          Length = 166843

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 169   atggaagagctgaaatgttg 188
             ||||||||||||||||||||
Sbjct: 80122 atggaagagctgaaatgttg 80103



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>gb|AC010099.10| Homo sapiens BAC clone RP11-420H19 from 7, complete sequence
          Length = 154836

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 294    ttgggctcaaattgccaggg 313
              ||||||||||||||||||||
Sbjct: 146223 ttgggctcaaattgccaggg 146242



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>emb|CR376785.10| Zebrafish DNA sequence from clone CH211-266K8 in linkage group 25,
             complete sequence
          Length = 173989

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 18    gacactttctgcaaaattct 37
             ||||||||||||||||||||
Sbjct: 22005 gacactttctgcaaaattct 21986



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>emb|BX322570.4| Zebrafish DNA sequence from clone DKEY-27H10 in linkage group 1,
             complete sequence
          Length = 185032

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 176   agctgaaatgttgccaaaga 195
             ||||||||||||||||||||
Sbjct: 58010 agctgaaatgttgccaaaga 58029



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>emb|AL844217.7| Zebrafish DNA sequence from clone DKEY-218L17, complete sequence
          Length = 246026

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 176   agctgaaatgttgccaaaga 195
             ||||||||||||||||||||
Sbjct: 22053 agctgaaatgttgccaaaga 22072



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>gb|AC155634.1| Mus musculus BAC clone RP24-468P7 from 12, complete sequence
          Length = 174997

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 20    cactttctgcaaaattctca 39
             ||||||||||||||||||||
Sbjct: 74642 cactttctgcaaaattctca 74623



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>emb|BX255939.3| Zebrafish DNA sequence from clone DKEY-5G7 in linkage group 20,
             complete sequence
          Length = 168897

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 247   aacacatttactgtacagtc 266
             ||||||||||||||||||||
Sbjct: 51008 aacacatttactgtacagtc 50989


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,277,255
Number of Sequences: 3902068
Number of extensions: 2277255
Number of successful extensions: 38114
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38104
Number of HSP's gapped (non-prelim): 10
length of query: 335
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 313
effective length of database: 17,147,199,772
effective search space: 5367073528636
effective search space used: 5367073528636
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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