ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl32b10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT016893.1| Zea mays clone Contig726 mRNA sequence 58 3e-05
2dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
3dbj|AP004027.3| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
4gb|BT018372.1| Zea mays clone EL01N0306F02.d mRNA sequence 50 0.006
5gb|AY103745.1| Zea mays PCO097601 mRNA sequence 50 0.006
6dbj|AK102187.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.025
7emb|AL592224.17| Mouse DNA sequence from clone RP23-174G1 on chr... 44 0.38
8gb|AC111083.13| Mus musculus chromosome 3, clone RP23-142D9, com... 42 1.5
9gb|AC125503.3| Oryctolagus cuniculus clone LB1-115H21, complete ... 42 1.5
10gb|AC145821.16| Papio anubis clone rp41-103i16, complete sequence 42 1.5
11gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold 42 1.5
12emb|X01777.1|HVB3HORD Barley mRNA fragment for B3-hordein 42 1.5
13gb|AF016238.1|HVHORD2 Hordeum vulgare seed storage protein (HORD... 42 1.5
14gb|DQ267478.1| Hordeum vulgare subsp. vulgare clone Hn6 B hordei... 42 1.5
15gb|M23836.1|BLYHOR21A Hordeum vulgare hordein (hor2-1) mRNA, 3' UTR 42 1.5
16ref|NM_187920.1| Oryza sativa (japonica cultivar-group), predic... 40 6.0
17gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 40 6.0
18gb|AY659938.1| Oryza sativa (japonica cultivar-group) RAA1 (RAA1... 40 6.0
19gb|AE006829.1| Sulfolobus solfataricus P2 section 188 of 272 of ... 40 6.0
20ref|XM_716488.1| Candida albicans SC5314 putative nuclear conden... 40 6.0
21gb|AC161176.5| Mus musculus chromosome 5, clone RP24-295A5, comp... 40 6.0
22gb|AC125402.3| Mus musculus BAC clone RP24-539G2 from chromosome... 40 6.0
23gb|BC058201.1| Xenopus laevis hypothetical protein MGC68557, mRN... 40 6.0
24gb|BC041518.1| Xenopus laevis proteasome (prosome, macropain) su... 40 6.0
25emb|Z85986.1|HS108K11 Human DNA sequence from clone RP1-108K11 o... 40 6.0
26emb|AL139810.16| Human DNA sequence from clone RP11-576G22 on ch... 40 6.0
27emb|AL136164.8| Human DNA sequence from clone RP3-331H24 on chro... 40 6.0
28emb|CR932397.9| Zebrafish DNA sequence from clone CH211-123E19 i... 40 6.0
29emb|BX537343.8| Zebrafish DNA sequence from clone CH211-192A19 i... 40 6.0
30emb|BX323872.6| Zebrafish DNA sequence from clone RP71-25E6, com... 40 6.0
31gb|AC104958.6| Homo sapiens chromosome 8, clone RP11-713M15, com... 40 6.0
32dbj|AB089431.1| Cryptomeria japonica DNA, microsatellite region,... 40 6.0
33gb|AC084740.5| Homo sapiens BAC clone RP11-423E20 from 4, comple... 40 6.0
34dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
35dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
36gb|AC020699.6| Homo sapiens BAC clone RP11-131K17 from 4, comple... 40 6.0
37gb|AC079354.4| Homo sapiens BAC clone RP11-1145F21 from 2, compl... 40 6.0
38gb|AC139931.5| Homo sapiens 12 BAC RP11-43A22 (Roswell Park Canc... 40 6.0
39gb|AC103779.5| Homo sapiens chromosome 8, clone RP11-466B9, comp... 40 6.0
40dbj|AP002525.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
41gb|BC040858.1| Homo sapiens, clone IMAGE:5528391, mRNA 40 6.0
42dbj|AP004664.5| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
43dbj|AK070626.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.0
44dbj|AK058670.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.0
45emb|AL772283.4| Mouse DNA sequence from clone RP23-258N14 on chr... 40 6.0
46dbj|AP004387.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 6.0 
>gb|BT016893.1| Zea mays clone Contig726 mRNA sequence
          Length = 858

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 68/81 (83%)
 Strand = Plus / Plus

                                                                       
Query: 348 tcatggatactaatcagcacgactagtatctcggtggcgctggcggcaaccgatttggcg 407
           ||||| |||| ||||||||||| |||||| | || || ||||| |||||||| ||||| |
Sbjct: 190 tcatgaataccaatcagcacgattagtattttggcggtgctggtggcaaccggtttggtg 249

                                
Query: 408 tgcgtcggctgctggagttgg 428
           |||| |||||||  |||||||
Sbjct: 250 tgcgccggctgccagagttgg 270
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 63/75 (84%)
 Strand = Plus / Minus

                                                                           
Query: 354     atactaatcagcacgactagtatctcggtggcgctggcggcaaccgatttggcgtgcgtc 413
               ||||||||||||  || |||||| | || || ||||| || ||||| ||||| |||||||
Sbjct: 7680469 atactaatcagcgtgattagtatttaggaggtgctggaggtaaccggtttggagtgcgtc 7680410

                              
Query: 414     ggctgctggagttgg 428
               |||||| ||||||||
Sbjct: 7680409 ggctgccggagttgg 7680395



 Score = 48.1 bits (24), Expect = 0.025
 Identities = 34/36 (94%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                                   
Query: 304     atcagaaacagagcgtg-tgcctagcaagaatacat 338
               ||||||||||| ||||| ||||||||||||||||||
Sbjct: 7680527 atcagaaacagggcgtggtgcctagcaagaatacat 7680492



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 179     tatatttctataaacaactc 198
               ||||||||||||||||||||
Sbjct: 7680653 tatatttctataaacaactc 7680634
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>dbj|AP004027.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OJ1136_C11
          Length = 124827

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 63/75 (84%)
 Strand = Plus / Minus

                                                                          
Query: 354    atactaatcagcacgactagtatctcggtggcgctggcggcaaccgatttggcgtgcgtc 413
              ||||||||||||  || |||||| | || || ||||| || ||||| ||||| |||||||
Sbjct: 103724 atactaatcagcgtgattagtatttaggaggtgctggaggtaaccggtttggagtgcgtc 103665

                             
Query: 414    ggctgctggagttgg 428
              |||||| ||||||||
Sbjct: 103664 ggctgccggagttgg 103650



 Score = 48.1 bits (24), Expect = 0.025
 Identities = 34/36 (94%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                                  
Query: 304    atcagaaacagagcgtg-tgcctagcaagaatacat 338
              ||||||||||| ||||| ||||||||||||||||||
Sbjct: 103782 atcagaaacagggcgtggtgcctagcaagaatacat 103747



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 179    tatatttctataaacaactc 198
              ||||||||||||||||||||
Sbjct: 103908 tatatttctataaacaactc 103889
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>gb|BT018372.1| Zea mays clone EL01N0306F02.d mRNA sequence
          Length = 1254

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 67/81 (82%)
 Strand = Plus / Minus

                                                                        
Query: 348  tcatggatactaatcagcacgactagtatctcggtggcgctggcggcaaccgatttggcg 407
            ||||| |||| ||||||||||| |||||| | || || ||||| |||||||| || || |
Sbjct: 1101 tcatgaataccaatcagcacgattagtattttggcggggctggtggcaaccggttcggtg 1042

                                 
Query: 408  tgcgtcggctgctggagttgg 428
            |||| |||||||  |||||||
Sbjct: 1041 tgcgccggctgccagagttgg 1021
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>gb|AY103745.1| Zea mays PCO097601 mRNA sequence
          Length = 1567

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 67/81 (82%)
 Strand = Plus / Minus

                                                                        
Query: 348  tcatggatactaatcagcacgactagtatctcggtggcgctggcggcaaccgatttggcg 407
            ||||| |||| ||||||||||| |||||| | || || ||||| |||||||| || || |
Sbjct: 1338 tcatgaataccaatcagcacgattagtattttggcggtgctggtggcaaccggttcggtg 1279

                                 
Query: 408  tgcgtcggctgctggagttgg 428
            |||| |||||||  |||||||
Sbjct: 1278 tgcgccggctgccagagttgg 1258



 Score = 46.1 bits (23), Expect = 0.097
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 176  ctatatatttctataaacaactc 198
            |||||||||||||||||||||||
Sbjct: 1507 ctatatatttctataaacaactc 1485
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>dbj|AK102187.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033086P03, full
            insert sequence
          Length = 3307

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 34/36 (94%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                                
Query: 304  atcagaaacagagcgtg-tgcctagcaagaatacat 338
            ||||||||||| ||||| ||||||||||||||||||
Sbjct: 3023 atcagaaacagggcgtggtgcctagcaagaatacat 2988



 Score = 46.1 bits (23), Expect = 0.097
 Identities = 62/75 (82%)
 Strand = Plus / Minus

                                                                        
Query: 354  atactaatcagcacgactagtatctcggtggcgctggcggcaaccgatttggcgtgcgtc 413
            ||||||||||||  || |||||| | || || ||||| || ||||| ||||| || ||||
Sbjct: 2965 atactaatcagcgtgattagtatttaggaggtgctggaggtaaccggtttggagtacgtc 2906

                           
Query: 414  ggctgctggagttgg 428
            |||||| ||||||||
Sbjct: 2905 ggctgccggagttgg 2891



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 179  tatatttctataaacaactc 198
            ||||||||||||||||||||
Sbjct: 3149 tatatttctataaacaactc 3130
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>emb|AL592224.17| Mouse DNA sequence from clone RP23-174G1 on chromosome 1, complete
              sequence
          Length = 217775

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 34     aaaattggtacaaattttatgtcaat 59
              |||||| |||||||||||||||||||
Sbjct: 204055 aaaatttgtacaaattttatgtcaat 204080
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>gb|AC111083.13| Mus musculus chromosome 3, clone RP23-142D9, complete sequence
          Length = 206194

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 45     aaattttatgtcaatttgtaagaag 69
              |||||||||||||| ||||||||||
Sbjct: 111546 aaattttatgtcaaattgtaagaag 111570
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>gb|AC125503.3| Oryctolagus cuniculus clone LB1-115H21, complete sequence
          Length = 176296

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 32    ttaaaattggtacaaattttatgtcaatt 60
             |||||||||||||||  ||||||||||||
Sbjct: 62102 ttaaaattggtacaagatttatgtcaatt 62130
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>gb|AC145821.16| Papio anubis clone rp41-103i16, complete sequence
          Length = 169553

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 42    tacaaattttatgtcaatttg 62
             |||||||||||||||||||||
Sbjct: 31376 tacaaattttatgtcaatttg 31356
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>gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold
          Length = 1889755

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 32      ttaaaattggtacaaattttatgtcaatt 60
               |||||||||||||||  ||||||||||||
Sbjct: 1491548 ttaaaattggtacaagatttatgtcaatt 1491576
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>emb|X01777.1|HVB3HORD Barley mRNA fragment for B3-hordein
          Length = 954

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 168 tgattcaactatatatttcta 188
           |||||||||||||||||||||
Sbjct: 833 tgattcaactatatatttcta 813
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>gb|AF016238.1|HVHORD2 Hordeum vulgare seed storage protein (HORDB3a) mRNA 3' end
           sequence, partial cds
          Length = 231

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 168 tgattcaactatatatttcta 188
           |||||||||||||||||||||
Sbjct: 134 tgattcaactatatatttcta 114
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>gb|DQ267478.1| Hordeum vulgare subsp. vulgare clone Hn6 B hordein gene, complete cds
          Length = 1152

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 168  tgattcaactatatatttcta 188
            |||||||||||||||||||||
Sbjct: 1102 tgattcaactatatatttcta 1082
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>gb|M23836.1|BLYHOR21A Hordeum vulgare hordein (hor2-1) mRNA, 3' UTR
          Length = 165

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 168 tgattcaactatatatttcta 188
           |||||||||||||||||||||
Sbjct: 41  tgattcaactatatatttcta 21
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>ref|NM_187920.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 330

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 280 ctccaccaatctcaccaccc 299
           ||||||||||||||||||||
Sbjct: 48  ctccaccaatctcaccaccc 29
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>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 380     ggtggcgctggcggcaaccg 399
               ||||||||||||||||||||
Sbjct: 2802126 ggtggcgctggcggcaaccg 2802145
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>gb|AY659938.1| Oryza sativa (japonica cultivar-group) RAA1 (RAA1) mRNA, complete
           cds
          Length = 729

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 280 ctccaccaatctcaccaccc 299
           ||||||||||||||||||||
Sbjct: 100 ctccaccaatctcaccaccc 81
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>gb|AE006829.1| Sulfolobus solfataricus P2 section 188 of 272 of the complete genome
          Length = 10809

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 29   tgattaaaattggtacaaatttta 52
            ||||||||| ||||||||||||||
Sbjct: 9237 tgattaaaaatggtacaaatttta 9214
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>ref|XM_716488.1| Candida albicans SC5314 putative nuclear condensin complex subunit G
            (CaO19_9190), mRNA
          Length = 3780

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 26   agctgattaaaattggtacaaatt 49
            |||||||||||| |||||||||||
Sbjct: 3338 agctgattaaaagtggtacaaatt 3361
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>gb|AC161176.5| Mus musculus chromosome 5, clone RP24-295A5, complete sequence
          Length = 157001

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 163   agaattgattcaactatatatttc 186
             |||||||||||||||| |||||||
Sbjct: 41316 agaattgattcaactaaatatttc 41339
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>gb|AC125402.3| Mus musculus BAC clone RP24-539G2 from chromosome 5, complete sequence
          Length = 163773

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 163    agaattgattcaactatatatttc 186
              |||||||||||||||| |||||||
Sbjct: 151929 agaattgattcaactaaatatttc 151952
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>gb|BC058201.1| Xenopus laevis hypothetical protein MGC68557, mRNA (cDNA clone
           MGC:68557 IMAGE:4031378), complete cds
          Length = 971

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 207 tgcgcatgcatacacactgt 226
           ||||||||||||||||||||
Sbjct: 422 tgcgcatgcatacacactgt 441
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>gb|BC041518.1| Xenopus laevis proteasome (prosome, macropain) subunit, alpha type,
           3, mRNA (cDNA clone MGC:53724 IMAGE:4930219), complete
           cds
          Length = 974

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 207 tgcgcatgcatacacactgt 226
           ||||||||||||||||||||
Sbjct: 421 tgcgcatgcatacacactgt 440
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>emb|Z85986.1|HS108K11 Human DNA sequence from clone RP1-108K11 on chromosome 6p21 Contains the
              SFRS3 for splicing factor arginine/serine-rich (SRP20), the
              STK38 gene for serine/threonine protein kinase (NDR), the
              3' end of a gene for a novel protein (2410004NRIK) and a
              CpG island, complete sequence
          Length = 145616

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 35     aaattggtacaaattttatg 54
              ||||||||||||||||||||
Sbjct: 140140 aaattggtacaaattttatg 140159
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>emb|AL139810.16| Human DNA sequence from clone RP11-576G22 on chromosome Xp11.23-11.4
             Contains the 5' end of a novel gene, complete sequence
          Length = 27299

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 331   gaatacataataataaatca 350
             ||||||||||||||||||||
Sbjct: 26365 gaatacataataataaatca 26384
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>emb|AL136164.8| Human DNA sequence from clone RP3-331H24 on chromosome 6 Contains the
             5' end of a novel gene, the gene for a novel protein
             similar to opioid growth factor receptor and a CpG island,
             complete sequence
          Length = 108253

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 178   atatatttctataaacaactctgg 201
             |||||||||||||||| |||||||
Sbjct: 20311 atatatttctataaactactctgg 20334
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>emb|CR932397.9| Zebrafish DNA sequence from clone CH211-123E19 in linkage group 13,
             complete sequence
          Length = 173825

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 20    tattaaagctgattaaaatt 39
             ||||||||||||||||||||
Sbjct: 92592 tattaaagctgattaaaatt 92573
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>emb|BX537343.8| Zebrafish DNA sequence from clone CH211-192A19 in linkage group 16,
             complete sequence
          Length = 59017

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 171   ttcaactatatatttctata 190
             ||||||||||||||||||||
Sbjct: 40475 ttcaactatatatttctata 40456
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>emb|BX323872.6| Zebrafish DNA sequence from clone RP71-25E6, complete sequence
          Length = 184178

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 171    ttcaactatatatttctata 190
              ||||||||||||||||||||
Sbjct: 181477 ttcaactatatatttctata 181496
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>gb|AC104958.6| Homo sapiens chromosome 8, clone RP11-713M15, complete sequence
          Length = 188326

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 42     tacaaattttatgtcaattt 61
              ||||||||||||||||||||
Sbjct: 115415 tacaaattttatgtcaattt 115434
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>dbj|AB089431.1| Cryptomeria japonica DNA, microsatellite region, clone:Cjg0193F
          Length = 309

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 152 aaccaatagagagaattgat 171
           ||||||||||||||||||||
Sbjct: 139 aaccaatagagagaattgat 120
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>gb|AC084740.5| Homo sapiens BAC clone RP11-423E20 from 4, complete sequence
          Length = 131395

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 34    aaaattggtacaaattttat 53
             ||||||||||||||||||||
Sbjct: 79690 aaaattggtacaaattttat 79671
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 133     aaataaaagatggatcatgaaccaatag 160
               |||||||||||||| || ||||||||||
Sbjct: 3398188 aaataaaagatggaacaggaaccaatag 3398161
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 280     ctccaccaatctcaccaccc 299
               ||||||||||||||||||||
Sbjct: 8585799 ctccaccaatctcaccaccc 8585818
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>gb|AC020699.6| Homo sapiens BAC clone RP11-131K17 from 4, complete sequence
          Length = 186961

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 332   aatacataataataaatcat 351
             ||||||||||||||||||||
Sbjct: 52428 aatacataataataaatcat 52447
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>gb|AC079354.4| Homo sapiens BAC clone RP11-1145F21 from 2, complete sequence
          Length = 162554

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 28    ctgattaaaattggtacaaatttt 51
             |||||| |||||||||||||||||
Sbjct: 78485 ctgattcaaattggtacaaatttt 78508
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>gb|AC139931.5| Homo sapiens 12 BAC RP11-43A22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 94635

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 332   aatacataataataaatcat 351
             ||||||||||||||||||||
Sbjct: 56035 aatacataataataaatcat 56054
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>gb|AC103779.5| Homo sapiens chromosome 8, clone RP11-466B9, complete sequence
          Length = 115682

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 142   atggatcatgaaccaataga 161
             ||||||||||||||||||||
Sbjct: 62993 atggatcatgaaccaataga 62974
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>dbj|AP002525.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0462H08
          Length = 139152

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 280   ctccaccaatctcaccaccc 299
             ||||||||||||||||||||
Sbjct: 17994 ctccaccaatctcaccaccc 18013
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>gb|BC040858.1| Homo sapiens, clone IMAGE:5528391, mRNA
          Length = 2228

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 331  gaatacataataataaatca 350
            ||||||||||||||||||||
Sbjct: 2170 gaatacataataataaatca 2189
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>dbj|AP004664.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0428D12
          Length = 141678

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 133   aaataaaagatggatcatgaaccaatag 160
             |||||||||||||| || ||||||||||
Sbjct: 38008 aaataaaagatggaacaggaaccaatag 37981
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>dbj|AK070626.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056F13, full
           insert sequence
          Length = 786

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 280 ctccaccaatctcaccaccc 299
           ||||||||||||||||||||
Sbjct: 144 ctccaccaatctcaccaccc 125
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>dbj|AK058670.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-H02, full
           insert sequence
          Length = 239

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 179 tatatttctataaacaactc 198
           ||||||||||||||||||||
Sbjct: 78  tatatttctataaacaactc 59
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>emb|AL772283.4| Mouse DNA sequence from clone RP23-258N14 on chromosome X, complete
              sequence
          Length = 132296

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 21     attaaagctgattaaaattg 40
              ||||||||||||||||||||
Sbjct: 116433 attaaagctgattaaaattg 116452
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>dbj|AP004387.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1201B11
          Length = 156200

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 42    tacaaattttatgtcaattt 61
             ||||||||||||||||||||
Sbjct: 70126 tacaaattttatgtcaattt 70107


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,510,266
Number of Sequences: 3902068
Number of extensions: 4510266
Number of successful extensions: 92606
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92392
Number of HSP's gapped (non-prelim): 214
length of query: 444
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 422
effective length of database: 17,147,199,772
effective search space: 7236118303784
effective search space used: 7236118303784
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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