ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl32b09 |
|---|---|
| Clone Library Name | barley_pub |
>INSR_AEDAE (Q93105) Insulin-like receptor precursor (EC 2.7.10.1) (MIR)| [Contains: Insulin-like receptor alpha chain; Insulin-like receptor beta chain] Length = 1390 Score = 31.6 bits (70), Expect = 0.48 Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 7/39 (17%) Frame = -3 Query: 112 VRTRTVGTSGV-------YFTTAPSLPSLLRKLCVSRNE 17 V+T T+G+ G+ YFTTAP PS++R + VS N+ Sbjct: 599 VKTYTLGSEGLGGQSKIKYFTTAPGTPSVVRDVEVSVNK 637
>COBL4_ARATH (Q9LFW3) COBRA-like protein 4 precursor| Length = 431 Score = 30.0 bits (66), Expect = 1.4 Identities = 15/47 (31%), Positives = 23/47 (48%) Frame = -3 Query: 289 HIVCPLRVLWFTARVWTHILLRKL*RTDLVHRSSHTRWGLERDYRNL 149 H +CP+RV W + K+ T+ +R +HT W L + NL Sbjct: 273 HHMCPVRVHWHVKTNYKDYWRVKIAITNFNYRMNHTLWTLAIQHPNL 319
>UBP8_SCHPO (Q09738) Probable ubiquitin carboxyl-terminal hydrolase 8 (EC| 3.1.2.15) (Ubiquitin thioesterase 8) (Ubiquitin-specific processing protease 8) (Deubiquitinating enzyme 8) Length = 449 Score = 29.3 bits (64), Expect = 2.4 Identities = 14/43 (32%), Positives = 20/43 (46%) Frame = +1 Query: 112 PTSLHCTVADIRLSSYNPSPDPTLYGSFYALDLSFTVFSIKCG 240 PT + C + D+ S YN T YG L+L + + CG Sbjct: 186 PTCMTCAIDDMFSSIYNSKNKSTFYGPTAVLNLMWKLSKSLCG 228
>COBRA_ARATH (Q94KT8) COBRA protein precursor (Cell expansion protein)| Length = 456 Score = 29.3 bits (64), Expect = 2.4 Identities = 13/45 (28%), Positives = 24/45 (53%) Frame = -3 Query: 283 VCPLRVLWFTARVWTHILLRKL*RTDLVHRSSHTRWGLERDYRNL 149 +CP+RV W + + K+ T+ +R ++T+W L + NL Sbjct: 297 MCPIRVHWHVKQNYKEYWRVKITITNFNYRLNYTQWNLVAQHPNL 341
>YFEO_SHIFL (P59585) Putative ion-transport protein yfeO| Length = 418 Score = 28.9 bits (63), Expect = 3.1 Identities = 10/16 (62%), Positives = 14/16 (87%) Frame = +2 Query: 215 LQFSQ*NVGPDPSCEP 262 ++FSQ + GPDP+CEP Sbjct: 74 IRFSQGHAGPDPACEP 89
>YFEO_ECOLI (P67729) Putative ion-transport protein yfeO| Length = 418 Score = 28.9 bits (63), Expect = 3.1 Identities = 10/16 (62%), Positives = 14/16 (87%) Frame = +2 Query: 215 LQFSQ*NVGPDPSCEP 262 ++FSQ + GPDP+CEP Sbjct: 74 IRFSQGHAGPDPACEP 89
>YFEO_ECOL6 (Q8FFD3) Putative ion-transport protein yfeO| Length = 418 Score = 28.9 bits (63), Expect = 3.1 Identities = 10/16 (62%), Positives = 14/16 (87%) Frame = +2 Query: 215 LQFSQ*NVGPDPSCEP 262 ++FSQ + GPDP+CEP Sbjct: 74 IRFSQGHAGPDPACEP 89
>YFEO_ECO57 (P67730) Putative ion-transport protein yfeO| Length = 418 Score = 28.9 bits (63), Expect = 3.1 Identities = 10/16 (62%), Positives = 14/16 (87%) Frame = +2 Query: 215 LQFSQ*NVGPDPSCEP 262 ++FSQ + GPDP+CEP Sbjct: 74 IRFSQGHAGPDPACEP 89
>PA1_PROVU (P37447) Phospholipase A1 precursor (EC 3.1.1.32) (EC 3.1.1.4)| (Detergent-resistant phospholipase A) (DR-phospholipase A) (Phosphatidylcholine 1-acylhydrolase) (Outer membrane phospholipase A) (OM PLA) Length = 289 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/38 (36%), Positives = 23/38 (60%) Frame = -1 Query: 174 VWRGIIGT*SYVCYSAMQRGWFEPGPLAQVGCTSPLRQ 61 +WRGI+G S + S QR W++ L+ G ++P R+ Sbjct: 97 LWRGILGDNSLLGASYTQRSWWQ---LSNTGESAPFRE 131
>POLR_KYMVJ (P36304) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1874 Score = 28.1 bits (61), Expect = 5.4 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%) Frame = +1 Query: 94 QRSWFE-PTSLHCTVADIRLSSYNPSPDPTL 183 Q WF+ P SL C + + + ++PS DPTL Sbjct: 1404 QFPWFDRPFSLSCQPSSLIAAKHSPSQDPTL 1434
>BCAL1_ARATH (Q8W0Z7) Branched-chain-amino-acid aminotransferase-like protein 1| (Atbcat-like) Length = 555 Score = 28.1 bits (61), Expect = 5.4 Identities = 11/29 (37%), Positives = 19/29 (65%) Frame = -3 Query: 175 GLERDYRNLVLCLLQCNAERLVRTRTVGT 89 G +R YR+ VL ++CN E++V+ G+ Sbjct: 46 GFDRPYRDEVLSKMECNGEKVVKDVIYGS 74
>PKNI_MYCTU (P65730) Probable serine/threonine-protein kinase pknI (EC| 2.7.11.1) Length = 585 Score = 27.7 bits (60), Expect = 7.0 Identities = 19/63 (30%), Positives = 25/63 (39%) Frame = +1 Query: 58 GLAQW*STPHLCQRSWFEPTSLHCTVADIRLSSYNPSPDPTLYGSFYALDLSFTVFSIKC 237 G QW S P Q P T A +L + P P L G ++ TV S +C Sbjct: 476 GEGQWKSRPETVQFPCVGPNGSPSTQATTQLLALRPQPQGDLVG-----EMVVTVHSNEC 530 Query: 238 GSR 246 G + Sbjct: 531 GQQ 533
>PKNI_MYCBO (P65731) Probable serine/threonine-protein kinase pknI (EC| 2.7.11.1) Length = 585 Score = 27.7 bits (60), Expect = 7.0 Identities = 19/63 (30%), Positives = 25/63 (39%) Frame = +1 Query: 58 GLAQW*STPHLCQRSWFEPTSLHCTVADIRLSSYNPSPDPTLYGSFYALDLSFTVFSIKC 237 G QW S P Q P T A +L + P P L G ++ TV S +C Sbjct: 476 GEGQWKSRPETVQFPCVGPNGSPSTQATTQLLALRPQPQGDLVG-----EMVVTVHSNEC 530 Query: 238 GSR 246 G + Sbjct: 531 GQQ 533
>SYI_YERPS (Q66ES4) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 938 Score = 27.7 bits (60), Expect = 7.0 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = +1 Query: 103 WFEPTSLHCTVADIRLSSYNPSPDPTLYGS 192 WF+ S H +V D+R SPD L GS Sbjct: 534 WFDSGSTHSSVVDVRPEFGGHSPDMYLEGS 563
>SYI_YERPE (Q8ZIM0) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 938 Score = 27.7 bits (60), Expect = 7.0 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = +1 Query: 103 WFEPTSLHCTVADIRLSSYNPSPDPTLYGS 192 WF+ S H +V D+R SPD L GS Sbjct: 534 WFDSGSTHSSVVDVRPEFGGHSPDMYLEGS 563
>TAF5_MOUSE (Q8C092) Transcription initiation factor TFIID subunit 5| (Transcription initiation factor TFIID 100 kDa subunit) (TAF(II)100) (TAFII-100) (TAFII100) Length = 801 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = +1 Query: 148 LSSYNPSPDPTLYGSFYALDLSFTVFSIKC 237 LS+YN DPT+Y +Y+ F S+ C Sbjct: 203 LSAYNQQGDPTMYEEYYSGLKHFIECSLDC 232
>ADA2B_HORSE (O77721) Alpha-2B adrenergic receptor (Alpha-2B adrenoceptor)| (Alpha-2B adrenoreceptor) (Fragment) Length = 389 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 3/31 (9%) Frame = +3 Query: 192 LLCTRSVLYSF---LNKMWVQTRAVNHNTRR 275 L CT S+++ L++ W TRA+ +NT+R Sbjct: 81 LFCTSSIVHLCAISLDRYWAVTRALEYNTKR 111
>TAF5_HUMAN (Q15542) Transcription initiation factor TFIID subunit 5| (Transcription initiation factor TFIID 100 kDa subunit) (TAF(II)100) (TAFII-100) (TAFII100) Length = 800 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = +1 Query: 148 LSSYNPSPDPTLYGSFYALDLSFTVFSIKC 237 LS+YN DPT+Y +Y+ F S+ C Sbjct: 202 LSAYNQQGDPTMYEEYYSGLKHFIECSLDC 231
>YR681_MIMIV (Q5UNT5) Hypothetical protein R681| Length = 151 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 4/29 (13%) Frame = +3 Query: 297 LPLDANQITGLTT----QTCCKNYFHASS 371 LPLD+N++ LTT QT K YF+ S+ Sbjct: 4 LPLDSNELQELTTESINQTIIKKYFNESA 32 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,364,507 Number of Sequences: 219361 Number of extensions: 1306120 Number of successful extensions: 2697 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 2626 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2697 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 1391514312 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
