ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbastl32b08 |
|---|---|
| Clone Library Name | barley_pub |
>TCF20_MOUSE (Q9EPQ8) Transcription factor 20 (Stromelysin 1 PDGF-responsive| element-binding protein) (SPRE-binding protein) (Nuclear factor SPBP) Length = 1983 Score = 32.0 bits (71), Expect = 0.81 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Frame = +2 Query: 125 VPPVIKE-QEQEHQQPTDQENQNNGQLNFQKLDRHPPVAEAQLLILVSMLPVHCDI 289 +PP ++ Q+Q+ QQP Q+ Q Q Q+ +HPP Q + +P+ + Sbjct: 317 IPPGNQQGQQQQQQQPQPQQQQPQQQQQQQQQQQHPPQRVMQYTNAATKIPLQSQV 372
>TOB1_RAT (Q8R5K6) Tob1 protein (Transducer of erbB-2 1)| Length = 365 Score = 32.0 bits (71), Expect = 0.81 Identities = 13/34 (38%), Positives = 19/34 (55%) Frame = +2 Query: 98 PDRDPCRLPVPPVIKEQEQEHQQPTDQENQNNGQ 199 P + P + P PP +Q+Q+HQQ Q+ Q Q Sbjct: 246 PQQPPSQPPPPPPPPQQQQQHQQQQQQQQQQQQQ 279
>KCNN3_HUMAN (Q9UGI6) Small conductance calcium-activated potassium channel| protein 3 (SK3) (SKCa3) Length = 736 Score = 30.8 bits (68), Expect = 1.8 Identities = 20/62 (32%), Positives = 29/62 (46%) Frame = +2 Query: 110 PCRLPVPPVIKEQEQEHQQPTDQENQNNGQLNFQKLDRHPPVAEAQLLILVSMLPVHCDI 289 P P PP +++Q+Q+ QQ Q+ Q + PP +QL L S PVH + Sbjct: 57 PSLQPQPPQLQQQQQQQQQQQQQQQQ----------QQQPPHPLSQLAQLQSQ-PVHPGL 105 Query: 290 SH 295 H Sbjct: 106 LH 107
>ENC_DROME (Q8MSX1) Protein encore| Length = 1818 Score = 30.8 bits (68), Expect = 1.8 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 5/60 (8%) Frame = +2 Query: 110 PCRLPVPPVIKEQEQEHQQPTDQENQNNGQLNFQKLDR-----HPPVAEAQLLILVSMLP 274 P R P P EQ+Q+ Q E+ NN +N + + P+ E +I+ S P Sbjct: 160 PPRTPTPRAASEQQQQQLQGEQHEHNNNNNINSSSKAQSAGRGNSPLMETPAVIVTSQQP 219
>NCOA6_HUMAN (Q14686) Nuclear receptor coactivator 6 (Amplified in breast cancer| protein 3) (Cancer-amplified transcriptional coactivator ASC-2) (Activating signal cointegrator 2) (ASC-2) (Peroxisome proliferator-activated receptor-interacting protein) (P Length = 2063 Score = 30.0 bits (66), Expect = 3.1 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = +2 Query: 131 PVIKEQEQEHQQPTDQENQNNGQLNFQKLDRHPPVAEAQ 247 P +++Q+Q+ QQ Q+ Q Q Q+L PP Q Sbjct: 258 PQLQQQQQQQQQQQQQQQQQQQQQQQQQLQARPPQQHQQ 296
>CHLD_SYNP7 (O07345) Magnesium-chelatase subunit chlD (EC 6.6.1.1)| (Mg-protoporphyrin IX chelatase) (Mg-chelatase subunit D) Length = 677 Score = 30.0 bits (66), Expect = 3.1 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 3/51 (5%) Frame = +2 Query: 98 PDRDPCRLPVPPVIKEQ---EQEHQQPTDQENQNNGQLNFQKLDRHPPVAE 241 P+ P P PP +EQ +++++Q D+ ++ + Q+ D PP+ E Sbjct: 332 PEEPPAAPPPPPPSQEQQGEDEQNEQEPDEPDEPENDSDDQQPDTPPPIPE 382
>E2AK1_MOUSE (Q9Z2R9) Eukaryotic translation initiation factor 2-alpha kinase 1| (EC 2.7.11.1) (Heme-regulated eukaryotic initiation factor eIF-2-alpha kinase) (Heme-regulated inhibitor) (Heme-controlled repressor) (HCR) (Hemin-sensitive initiation factor Length = 619 Score = 30.0 bits (66), Expect = 3.1 Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 2/52 (3%) Frame = +2 Query: 101 DRDPCRLPVPPVIKEQEQEHQQPTDQENQNNGQLNFQKL--DRHPPVAEAQL 250 DR P +LP V+ EQE + Q ++N+++ + F +L ++ P E+++ Sbjct: 244 DRVPIQLPSLEVLSEQEGDRDQGGVKDNESSSSIVFAELTPEKEKPFGESEV 295
>CDGT_KLEOX (P08704) Cyclomaltodextrin glucanotransferase precursor (EC| 2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase) Length = 655 Score = 30.0 bits (66), Expect = 3.1 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 9/78 (11%) Frame = +3 Query: 36 YGASKNTTYKINKKSMDLANDPTVTLADFQFHQ**R--------NRNKNINSQQIKK-TK 188 +GAS NTT ++ ++D AN L DF F N K +NS IK+ T Sbjct: 289 FGASANTTTGVDGNAIDYANTSGSALLDFGFRDTLERVLVGRSGNTMKTLNSYLIKRQTV 348 Query: 189 TTANSISKSSTDTHPLPR 242 T++ D H + R Sbjct: 349 FTSDDWQVVFMDNHDMAR 366
>YOR3_ADEG1 (P20745) Hypothetical protein (ORF 3) (Fragment)| Length = 126 Score = 29.6 bits (65), Expect = 4.0 Identities = 13/43 (30%), Positives = 21/43 (48%) Frame = +2 Query: 110 PCRLPVPPVIKEQEQEHQQPTDQENQNNGQLNFQKLDRHPPVA 238 PC VPP + + ++ +N+N G ++ RHPP A Sbjct: 78 PCIYSVPPPLDRSHESPEEFFPPQNRNRGGGPKAQIQRHPPEA 120
>EFGL_THEMA (Q9X1Y4) Elongation factor G-like protein| Length = 683 Score = 29.6 bits (65), Expect = 4.0 Identities = 13/45 (28%), Positives = 24/45 (53%) Frame = +2 Query: 275 VHCDISHK*SKKIKFLNINISNFLLTYRLTVAPVKQREHQHTKET 409 +H D+ + KKI +++ + + YR T+ EH+H K+T Sbjct: 439 MHLDVMIERLKKIFGVDVEVGKPKIAYRETITTTAVAEHKHKKQT 483
>MYB_HUMAN (P10242) Myb proto-oncogene protein (C-myb)| Length = 640 Score = 29.6 bits (65), Expect = 4.0 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 7/55 (12%) Frame = +2 Query: 128 PPVIKEQEQEHQQPTDQENQ-------NNGQLNFQKLDRHPPVAEAQLLILVSML 271 PP++K+ +QE + PTD+ LN Q + PVA+A ++ S+L Sbjct: 520 PPLLKKIKQEVESPTDKSGNFFCSHHWEGDSLNTQLFTQTSPVADAPNILTSSVL 574
>PSME1_RAT (Q63797) Proteasome activator complex subunit 1 (Proteasome| activator 28-alpha subunit) (PA28alpha) (PA28a) (Activator of multicatalytic protease subunit 1) (11S regulator complex alpha subunit) (REG-alpha) Length = 249 Score = 28.9 bits (63), Expect = 6.8 Identities = 11/41 (26%), Positives = 24/41 (58%) Frame = +2 Query: 110 PCRLPVPPVIKEQEQEHQQPTDQENQNNGQLNFQKLDRHPP 232 P +PVP +KE+E+E ++ ++ + + + + D+ PP Sbjct: 60 PLDIPVPDPVKEKEKEERKKQQEKEEKDEKKKGDEDDKGPP 100
>PSME1_MOUSE (P97371) Proteasome activator complex subunit 1 (Proteasome| activator 28-alpha subunit) (PA28alpha) (PA28a) (Activator of multicatalytic protease subunit 1) (11S regulator complex alpha subunit) (REG-alpha) Length = 249 Score = 28.9 bits (63), Expect = 6.8 Identities = 17/80 (21%), Positives = 39/80 (48%), Gaps = 5/80 (6%) Frame = +2 Query: 110 PCRLPVPPVIKEQEQEHQQPTDQENQNNGQLNFQKLDRHPPVA-----EAQLLILVSMLP 274 P +PVP +KE+E+E ++ ++ + + + D+ PP E +++L + P Sbjct: 60 PLDIPVPDPVKEKEKEERKKQQEKEEKEEKKKGDEDDKGPPCGPVNCNEKIVVLLQRLKP 119 Query: 275 VHCDISHK*SKKIKFLNINI 334 D++ + + +L + I Sbjct: 120 EIKDVTEQLNLVTTWLQLQI 139
>PSME1_BOVIN (Q4U5R3) Proteasome activator complex subunit 1 (Proteasome| activator 28-alpha subunit) (PA28alpha) (PA28a) Length = 249 Score = 28.9 bits (63), Expect = 6.8 Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 5/80 (6%) Frame = +2 Query: 110 PCRLPVPPVIKEQEQEHQQPTDQENQNNGQLNFQKLDRHPPVA-----EAQLLILVSMLP 274 P +PVP +KE+E+E ++ ++ + + + D+ PP E +++L + P Sbjct: 60 PLDIPVPDPVKEKEKEERRKQQEKEDKDEKKKGEDEDKGPPCGPVGCNEKIVVLLQRVKP 119 Query: 275 VHCDISHK*SKKIKFLNINI 334 D+ K + +L + I Sbjct: 120 EIKDVIEKLNLVTTWLQLQI 139
>DSH_DROME (P51140) Segment polarity protein dishevelled| Length = 623 Score = 28.9 bits (63), Expect = 6.8 Identities = 13/37 (35%), Positives = 22/37 (59%) Frame = +2 Query: 137 IKEQEQEHQQPTDQENQNNGQLNFQKLDRHPPVAEAQ 247 +++Q+Q+HQQ Q+ Q + Q Q+ + PV AQ Sbjct: 118 LQQQQQQHQQQQQQQQQQHQQQQQQQQQQVQPVQLAQ 154
>PSME1_PIG (Q64L94) Proteasome activator complex subunit 1 (Proteasome| activator 28-alpha subunit) (PA28alpha) (PA28a) Length = 249 Score = 28.5 bits (62), Expect = 8.9 Identities = 11/41 (26%), Positives = 23/41 (56%) Frame = +2 Query: 110 PCRLPVPPVIKEQEQEHQQPTDQENQNNGQLNFQKLDRHPP 232 P +PVP +KE+E+E ++ ++ + + + D+ PP Sbjct: 60 PLDIPVPDPVKEKEKEERKKQQEKEDKDEKKKGEDEDKGPP 100
>PSME1_HUMAN (Q06323) Proteasome activator complex subunit 1 (Proteasome| activator 28-alpha subunit) (PA28alpha) (PA28a) (Activator of multicatalytic protease subunit 1) (11S regulator complex alpha subunit) (REG-alpha) (Interferon gamma up-regulated I-51 Length = 249 Score = 28.5 bits (62), Expect = 8.9 Identities = 11/41 (26%), Positives = 23/41 (56%) Frame = +2 Query: 110 PCRLPVPPVIKEQEQEHQQPTDQENQNNGQLNFQKLDRHPP 232 P +PVP +KE+E+E ++ ++ + + + D+ PP Sbjct: 60 PLDIPVPDPVKEKEKEERKKQQEKEDKDEKKKGEDEDKGPP 100
>KCNN3_RAT (P70605) Small conductance calcium-activated potassium channel| protein 3 (SK3) Length = 732 Score = 28.5 bits (62), Expect = 8.9 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = +2 Query: 110 PCRLPVPPVIKEQEQEHQQPTDQENQNNGQLNFQKLDRHPPVAEAQL 250 P P PP +++Q+Q+ QQ Q+ Q Q+ HP AQL Sbjct: 52 PLLQPQPPQLQQQQQQQQQQQQQQQQQ------QQAPLHPLPQLAQL 92
>SWR1_KLULA (Q6CJ38) Helicase SWR1 (EC 3.6.1.-)| Length = 1572 Score = 28.5 bits (62), Expect = 8.9 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 7/69 (10%) Frame = +3 Query: 18 SNKKSRYGASKNTTYKINKKSMDLAN-------DPTVTLADFQFHQ**RNRNKNINSQQI 176 S KS+ A K+ T + K+S ++ N DPT T D ++ N++KNI + Sbjct: 223 SKAKSKKRAVKSQTELVRKQSPEIKNESKRTKADPTHTNDDGNDNRKTNNKSKNIINNNE 282 Query: 177 KKTKTTANS 203 KT+ N+ Sbjct: 283 SGLKTSLNT 291
>DCP1B_HUMAN (Q8IZD4) mRNA decapping enzyme 1B (EC 3.-.-.-)| Length = 618 Score = 28.5 bits (62), Expect = 8.9 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 6/65 (9%) Frame = +2 Query: 101 DRDPCRLPV-PPVIKEQEQEHQQPTDQENQNNGQ-----LNFQKLDRHPPVAEAQLLILV 262 D+ C+ V PP Q+Q+ QQ QE Q L++++ RH P E QL + Sbjct: 236 DKATCQETVEPPQTLHQQQQQQQQQQQEKLPIRQGVVRSLSYEEPRRHSPPIEKQLCPAI 295 Query: 263 SMLPV 277 L V Sbjct: 296 QKLMV 300 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,819,987 Number of Sequences: 219361 Number of extensions: 972451 Number of successful extensions: 3452 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 3159 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3413 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
