>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                       
Query: 379      tcttcctcgacctctaccgaagctacagatgccactgca 417
                |||||||| | |||||| |||||||||||||||| ||||
Sbjct: 29114510 tcttcctcaatctctactgaagctacagatgccagtgca 29114472

>dbj|AP003245.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0421H07
          Length = 158126

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                    
Query: 379   tcttcctcgacctctaccgaagctacagatgccactgca 417
             |||||||| | |||||| |||||||||||||||| ||||
Sbjct: 74876 tcttcctcaatctctactgaagctacagatgccagtgca 74838

>emb|BX470161.8| Zebrafish DNA sequence from clone RP71-84I2, complete sequence
          Length = 197615

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 373    tctggctcttcctcgacctctaccg 397
              |||||||||||||| ||||||||||
Sbjct: 127697 tctggctcttcctctacctctaccg 127721

>gb|AC093876.3| Homo sapiens BAC clone RP11-631I21 from 4, complete sequence
          Length = 183972

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 99    acatgaaaaccctataaataaaatc 123
             ||||||||||| |||||||||||||
Sbjct: 49420 acatgaaaaccatataaataaaatc 49396

>gb|AC079925.6| Homo sapiens BAC clone RP11-544E17 from 4, complete sequence
          Length = 84665

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 219   gagctctagaagccttttgga 239
             |||||||||||||||||||||
Sbjct: 38829 gagctctagaagccttttgga 38849

>gb|BC108295.1| Rattus norvegicus cDNA clone IMAGE:7370647
          Length = 3120

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 380  cttcctcgacctctaccgaa 399
            ||||||||||||||||||||
Sbjct: 1159 cttcctcgacctctaccgaa 1140

>ref|XM_513613.1| PREDICTED: Pan troglodytes similar to KIAA0893 protein (LOC457082),
            mRNA
          Length = 3124

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 399  agctacagatgccactgcac 418
            ||||||||||||||||||||
Sbjct: 2142 agctacagatgccactgcac 2123

>gb|AC108412.8| Mus musculus chromosome 1, clone RP24-266K12, complete sequence
          Length = 160264

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 164  aatggaaagtaatcttgtgt 183
            ||||||||||||||||||||
Sbjct: 7980 aatggaaagtaatcttgtgt 7999

>ref|XM_864695.1| PREDICTED: Bos taurus similar to WD-repeat protein 47, transcript
            variant 2 (LOC512354), mRNA
          Length = 4226

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 399  agctacagatgccactgcac 418
            ||||||||||||||||||||
Sbjct: 2680 agctacagatgccactgcac 2661

>ref|XM_589861.2| PREDICTED: Bos taurus similar to WD-repeat protein 47, transcript
            variant 1 (LOC512354), mRNA
          Length = 3883

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 399  agctacagatgccactgcac 418
            ||||||||||||||||||||
Sbjct: 2337 agctacagatgccactgcac 2318

>ref|XM_873788.1| PREDICTED: Bos taurus similar to WD-repeat protein 47, transcript
            variant 3 (LOC512354), mRNA
          Length = 4186

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 399  agctacagatgccactgcac 418
            ||||||||||||||||||||
Sbjct: 2640 agctacagatgccactgcac 2621

>ref|NM_014969.3| Homo sapiens WD repeat domain 47 (WDR47), mRNA
          Length = 4259

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 399  agctacagatgccactgcac 418
            ||||||||||||||||||||
Sbjct: 2685 agctacagatgccactgcac 2666

>gb|AC124669.8| Mus musculus chromosome 1, clone RP23-110B5, complete sequence
          Length = 201456

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 164    aatggaaagtaatcttgtgt 183
              ||||||||||||||||||||
Sbjct: 172215 aatggaaagtaatcttgtgt 172234

>emb|BX679664.7| Human DNA sequence from clone RP11-20O24 on chromosome 1 Contains the
            TAF13 gene for TAF13 RNA polymerase II TATA box binding
            protein (TBP)-associated factor 18kDa, a RAN member RAS
            oncogene family (RAN) pseudogene, a ribosomal protein S27
            (metallopanstimulin 1) (RPS27) pseudogene, the 5' end of
            a novel gene (KIAA0893) and three CpG islands, complete
            sequence
          Length = 107685

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 399  agctacagatgccactgcac 418
            ||||||||||||||||||||
Sbjct: 3053 agctacagatgccactgcac 3072

>gb|BC034964.2| Homo sapiens WD repeat domain 47, mRNA (cDNA clone MGC:26714
            IMAGE:4823902), complete cds
          Length = 4259

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 399  agctacagatgccactgcac 418
            ||||||||||||||||||||
Sbjct: 2685 agctacagatgccactgcac 2666

>gb|BC039254.1| Homo sapiens WD repeat domain 47, mRNA (cDNA clone MGC:33742
            IMAGE:5287954), complete cds
          Length = 4181

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 399  agctacagatgccactgcac 418
            ||||||||||||||||||||
Sbjct: 2593 agctacagatgccactgcac 2574

>emb|AL596130.13| Mouse DNA sequence from clone RP23-209O5 on chromosome 11, complete
              sequence
          Length = 203000

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 63     caccaaaagctaaactgaca 82
              ||||||||||||||||||||
Sbjct: 105733 caccaaaagctaaactgaca 105752

>gb|BC056728.1| Danio rerio chromosome 14 open reading frame 11 (H. sapiens), mRNA
            (cDNA clone MGC:65820 IMAGE:6793428), complete cds
          Length = 1354

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 104  aaaaccctataaataaaatc 123
            ||||||||||||||||||||
Sbjct: 1140 aaaaccctataaataaaatc 1121

>dbj|AK074616.1| Homo sapiens cDNA FLJ90135 fis, clone HEMBB1000668
          Length = 2375

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 399 agctacagatgccactgcac 418
           ||||||||||||||||||||
Sbjct: 824 agctacagatgccactgcac 805

>gb|DP000059.1| Carollia perspicillata target 117 genomic scaffold
          Length = 359132

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 112    ataaataaaatcttaaagat 131
              ||||||||||||||||||||
Sbjct: 273692 ataaataaaatcttaaagat 273711

>gb|AF067129.2|AF067129 Mus musculus protein phosphatase-1 regulatory subunit 7 (Ppp1r7) gene,
             exons 1 through 11 and complete cds
          Length = 26880

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 164   aatggaaagtaatcttgtgt 183
             ||||||||||||||||||||
Sbjct: 23665 aatggaaagtaatcttgtgt 23684

>ref|NM_199784.1| Danio rerio chromosome 14 open reading frame 11 (H. sapiens)
            (c14orf11), mRNA
          Length = 1354

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 104  aaaaccctataaataaaatc 123
            ||||||||||||||||||||
Sbjct: 1140 aaaaccctataaataaaatc 1121

>ref|XM_217115.3| PREDICTED: Rattus norvegicus sortilin-related receptor, L(DLR class)
            A repeats-containing (predicted) (Sorl1_predicted), mRNA
          Length = 5673

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 380  cttcctcgacctctaccgaa 399
            ||||||||||||||||||||
Sbjct: 4749 cttcctcgacctctaccgaa 4768

>dbj|AB020700.1| Homo sapiens mRNA for KIAA0893 protein, partial cds
          Length = 4195

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 399  agctacagatgccactgcac 418
            ||||||||||||||||||||
Sbjct: 2644 agctacagatgccactgcac 2625

>gb|AE017226.1| Treponema denticola ATCC 35405, complete genome
          Length = 2843201

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 102    tgaaaaccctataaataaaa 121
              ||||||||||||||||||||
Sbjct: 344581 tgaaaaccctataaataaaa 344562


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,731,189
Number of Sequences: 3902068
Number of extensions: 4731189
Number of successful extensions: 83075
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82986
Number of HSP's gapped (non-prelim): 89
length of query: 448
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 426
effective length of database: 17,147,199,772
effective search space: 7304707102872
effective search space used: 7304707102872
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)